547 research outputs found
On the fluid-fluid phase separation in charged-stabilized colloidal suspensions
We develop a thermodynamic description of particles held at a fixed surface
potential. This system is of particular interest in view of the continuing
controversy over the possibility of a fluid-fluid phase separation in aqueous
colloidal suspensions with monovalent counterions. The condition of fixed
surface potential allows in a natural way to account for the colloidal charge
renormalization. In a first approach, we assess the importance of the so called
``volume terms'', and find that in the absence of salt, charge renormalization
is sufficient to stabilize suspension against a fluid-fluid phase separation.
Presence of salt, on the other hand, is found to lead to an instability. A very
strong dependence on the approximations used, however, puts the reality of this
phase transition in a serious doubt. To further understand the nature of the
instability we next study a Jellium-like approximation, which does not lead to
a phase separation and produces a relatively accurate analytical equation of
state for a deionized suspensions of highly charged colloidal spheres. A
critical analysis of various theories of strongly asymmetric electrolytes is
presented to asses their reliability as compared to the Monte Carlo
simulations
Conformational changes of calmodulin upon Ca2+ binding studied with a microfluidic mixer
A microfluidic mixer is applied to study the kinetics of calmodulin conformational changes upon Ca2+ binding. The device facilitates rapid, uniform mixing by decoupling hydrodynamic focusing from diffusive mixing and accesses time scales of tens of microseconds. The mixer is used in conjunction with multiphoton microscopy to examine the fast Ca2+-induced transitions of acrylodan-labeled calmodulin. We find that the kinetic rates of the conformational changes in two homologous globular domains differ by more than an order of magnitude. The characteristic time constants are ≈490 μs for the transitions in the C-terminal domain and ≈20 ms for those in the N-terminal domain of the protein. We discuss possible mechanisms for the two distinct events and the biological role of the stable intermediate, half-saturated calmodulin
Strong Attraction between Charged Spheres due to Metastable Ionized States
We report a mechanism which can lead to long range attractions between
like-charged spherical macroions, stemming from the existence of metastable
ionized states. We show that the ground state of a single highly charged
colloid plus a few excess counterions is overcharged. For the case of two
highly charged macroions in their neutralizing divalent counterion solution we
demonstrate that, in the regime of strong Coulomb coupling, the counterion
clouds are very likely to be unevenly distributed, leading to one overcharged
and one undercharged macroion. This long-living metastable configuration in
turn leads to a long range Coulomb attraction.Comment: REVTEX-published versio
On-chip label-free protein analysis with downstream electrodes for direct removal of electrolysis products.
The ability to apply highly controlled electric fields within microfluidic devices is valuable as a basis for preparative and analytical processes. A challenge encountered in the context of such approaches in conductive media, including aqueous buffers, is the generation of electrolysis products at the electrode/liquid interface which can lead to contamination, perturb fluid flows and generally interfere with the measurement process. Here, we address this challenge by designing a single layer microfluidic device architecture where the electric potential is applied outside and downstream of the microfluidic device while the field is propagated back to the chip via the use of a co-flowing highly conductive electrolyte solution that forms a stable interface at the separation region of the device. The co-flowing electrolyte ensures that all the generated electrolysis products, including Joule heat and gaseous products, are flowed away from the chip without coming into contact with the analytes while the single layer fabrication process where all the structures are defined lithographically allows producing the devices in a simple yet highly reproducible manner. We demonstrate that by allowing stable and effective application of electric fields in excess of 100 V cm-1, the described platform provides the basis for rapid separation of heterogeneous mixtures of proteins and protein complexes directly in their native buffers as well as for the simultaneous quantification of their charge states. We illustrate this by probing the interactions in a mixture of an amyloid forming protein, amyloid-β, and a molecular chaperone, Brichos, known to inhibit the process of amyloid formation. The availability of a platform for applying stable electric fields and its compatibility with single-layer soft-lithography processes opens up the possibility of separating and analysing a wide range of molecules on chip, including those with similar electrophoretic mobilities
Poisson-Boltzmann Theory of Charged Colloids: Limits of the Cell Model for Salty Suspensions
Thermodynamic properties of charge-stabilised colloidal suspensions are
commonly modeled by implementing the mean-field Poisson-Boltzmann (PB) theory
within a cell model. This approach models a bulk system by a single macroion,
together with counterions and salt ions, confined to a symmetrically shaped,
electroneutral cell. While easing solution of the nonlinear PB equation, the
cell model neglects microion-induced correlations between macroions, precluding
modeling of macroion ordering phenomena. An alternative approach, avoiding
artificial constraints of cell geometry, maps a macroion-microion mixture onto
a one-component model of pseudo-macroions governed by effective interactions.
In practice, effective-interaction models are usually based on linear screening
approximations, which can accurately describe nonlinear screening only by
incorporating an effective (renormalized) macroion charge. Combining charge
renormalization and linearized PB theories, in both the cell model and an
effective-interaction (cell-free) model, we compute osmotic pressures of highly
charged colloids and monovalent microions over a range of concentrations. By
comparing predictions with primitive model simulation data for salt-free
suspensions, and with predictions of nonlinear PB theory for salty suspensions,
we chart the limits of both the cell model and linear-screening approximations
in modeling bulk thermodynamic properties. Up to moderately strong
electrostatic couplings, the cell model proves accurate in predicting osmotic
pressures of deionized suspensions. With increasing salt concentration,
however, the relative contribution of macroion interactions grows, leading
predictions of the cell and effective-interaction models to deviate. No
evidence is found for a liquid-vapour phase instability driven by monovalent
microions. These results may guide applications of PB theory to soft materials.Comment: 27 pages, 5 figures, special issue of Journal of Physics: Condensed
Matter on "Classical density functional theory methods in soft and hard
matter
Charge Renormalization, Effective Interactions, and Thermodynamics of Deionized Colloidal Suspensions
Thermodynamic properties of charge-stabilised colloidal suspensions depend
sensitively on the effective charge of the macroions, which can be
substantially lower than the bare charge in the case of strong
counterion-macroion association. A theory of charge renormalization is
proposed, combining an effective one-component model of charged colloids with a
thermal criterion for distinguishing between free and associated counterions.
The theory predicts, with minimal computational effort, osmotic pressures of
deionized suspensions of highly charged colloids in close agreement with
large-scale simulations of the primitive model.Comment: 15 pages, 7 figure
Polar diversity of the Tardigrada: A combined morphological / molecular approach.
http://www.uam.es/otros/cn-scar//SCAR_IASC_IPY/pdf/17167.pdfPOLAR DIVERSITY OF THE TARDIGRADA: A COMBINED MORPHOLOGICAL / MOLECULAR APPROACH C.J. Sands1 , S.J. McInnes1 , N.J. Marley2 , W.P. Goodall-Copestake1 , P. Convey1 , L. Linse1 1 - Natural Environment Research Council, British Antarctic Survey, High Cross, Madingley Road, Cambridge, CB3 0ET, United Kingdom 2 - Marine Biology and Ecology Research Centre, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, United Kingdom [email protected] Examining the spatial distributions of organisms can provide information regarding their evolutionary history. We are investigating the origins and the processes that influence the contemporary distribution and diversity of Antarctic terrestrial biota. Tardigrades were chosen as a model group, as representatives are found in a diverse range of habitats across the Antarctic continent and sub-Antarctic islands. Our investigations involving approximately 400 individuals and 3 genes have identified systematic complexity requiring attention in order to prevent confounding the biogeographic signal. To overcome the challenges inherent in taxonomic and molecular work on very tiny animals (meiofauna), we have developed a protocol that allows efficient sample extraction and identification without interfering with downstream molecular processes. Our protocol provides joint morphological/molecular assessment of tardigrade taxonomy at the level of the individual that has resulted in identification of numerous cryptic species, cryptic genera and even cryptic families. To resolve polyphyly at the family level we have proposed three superfamilies that are strongly supported by molecular analyses. Here we present a systematic revision of the phylum Tardigrada along with some novel insights regarding Antarctic tardigrade biogeography
Proliferation of Tau 304-380 Fragment Aggregates through Autocatalytic Secondary Nucleation.
The self-assembly of the protein tau into neurofibrillary tangles is one of the hallmarks of Alzheimer's disease and related tauopathies. Still, the molecular mechanism of tau aggregation is largely unknown. This problem may be addressed by systematically obtaining reproducible in vitro kinetics measurements under quiescent conditions in the absence of triggering substances. Here, we implement this strategy by developing protocols for obtaining an ultrapure tau fragment (residues 304-380 of tau441) and for performing spontaneous aggregation assays with reproducible kinetics under quiescent conditions. We are thus able to identify the mechanism of fibril formation of the tau 304-380 fragment at physiological pH using fluorescence spectroscopy and mass spectrometry. We find that primary nucleation is slow, and that secondary processes dominate the aggregation process once the initial aggregates are formed. Moreover, our results further show that secondary nucleation of monomers on fibril surfaces dominates over fragmentation of fibrils. Using separate isotopes in monomers and fibrils, through mass spectroscopy measurements, we verify the isotope composition of the intermediate oligomeric species, which reveals that these small aggregates are generated from monomer through secondary nucleation. Our results provide a framework for understanding the processes leading to tau aggregation in disease and for selecting possible tau forms as targets in the development of therapeutic interventions in Alzheimer's disease
Influence of Nanoparticle Size and Shape on Oligomer Formation of an Amyloidogenic Peptide
Understanding the influence of macromolecular crowding and nanoparticles on
the formation of in-register -sheets, the primary structural component
of amyloid fibrils, is a first step towards describing \emph{in vivo} protein
aggregation and interactions between synthetic materials and proteins. Using
all atom molecular simulations in implicit solvent we illustrate the effects of
nanoparticle size, shape, and volume fraction on oligomer formation of an
amyloidogenic peptide from the transthyretin protein. Surprisingly, we find
that inert spherical crowding particles destabilize in-register -sheets
formed by dimers while stabilizing -sheets comprised of trimers and
tetramers. As the radius of the nanoparticle increases crowding effects
decrease, implying smaller crowding particles have the largest influence on the
earliest amyloid species. We explain these results using a theory based on the
depletion effect. Finally, we show that spherocylindrical crowders destabilize
the ordered -sheet dimer to a greater extent than spherical crowders,
which underscores the influence of nanoparticle shape on protein aggregation
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