Human factors of flight-deck checklists: The normal checklist

Although the aircraft checklist has long been regarded as the foundation of pilot standardization and cockpit safety, it has escaped the scrutiny of the human factors profession. The improper use, or the non-use, of the normal checklist by flight crews is often cited as the probable cause or at least a contributing factor to aircraft accidents. An attempt is made to analyze the normal checklist, its functions, format, design, length, usage, and the limitations of the humans who must interact with it. The development of the checklist from the certification of a new model to its delivery and use by the customer are discussed. The influence of the government, particularly the FAA Principle Operations Inspector, the manufacturer's philosophy, the airline's culture, and the end user, the pilot, influence the ultimate design and usage of this device. The effects of airline mergers and acquisitions on checklist usage and design are noted. In addition, the interaction between production pressures and checklist usage and checklist management are addressed. Finally, a list of design guidelines for normal checklists is provided

The observable effects of a photospheric component on GRB's and XRF's prompt emission spectrum

A thermal radiative component is likely to accompany the first stages of the prompt emission of Gamma-ray bursts (GRB's) and X-ray flashes (XRF's). We analyze the effect of such a component on the observable spectrum, assuming that the observable effects are due to a dissipation process occurring below or near the thermal photosphere. We consider both the internal shock model and a 'slow heating' model as possible dissipation mechanisms. For comparable energy densities in the thermal and the leptonic component, the dominant emission mechanism is Compton scattering. This leads to a nearly flat energy spectrum (\nu F_\nu \propto \nu^0) above the thermal peak at ~10-100 keV and below 10-100 MeV, for a wide range of optical depths 0.03 <~ \tau_{\gamma e} <~ 100, regardless of the details of the dissipation mechanism or the strength of the magnetic field. At lower energies steep slopes are expected, while above 100 MeV the spectrum depends on the details of the dissipation process. For higher values of the optical depth, a Wien peak is formed at 100 keV - 1 MeV, and no higher energy component exists. For any value of \tau_{\gamma e}, the number of pairs produced does not exceed the baryon related electrons by a factor larger than a few. We conclude that dissipation near the thermal photosphere can naturally explain both the steep slopes observed at low energies and a flat spectrum above 10 keV, thus providing an alternative scenario to the optically thin synchrotron - SSC model.Comment: Discussion added on the results of Baring & Braby (2004); Accepted for publication in Ap.

The Correlation of Spectral Lag Evolution with Prompt Optical Emission in GRB 080319B

We report on observations of correlated behavior between the prompt gamma-ray and optical emission from GRB 080319B, which confirm that (i) they occurred within the same astrophysical source region and (ii) their respective radiation mechanisms were dynamically coupled. Our results, based upon a new CCF methodology for determining the time-resolved spectral lag, are summarized as follows. First, the evolution in the arrival offset of prompt gamma-ray photon counts between Swift-BAT 15-25 keV and 50-100 keV energy bands (intrinsic gamma-ray spectral lag) appears to be anti-correlated with the arrival offset between prompt 15-350 keV gamma-rays and the optical emission observed by TORTORA (extrinsic optical/gamma-ray spectral lag), thus effectively partitioning the burst into two main episodes at ~T+28+/-2 sec. Second, the rise and decline of prompt optical emission at ~T+10+/-1 sec and ~T+50+/-1 sec, respectively, both coincide with discontinuities in the hard to soft evolution of the photon index for a power law fit to 15-150 keV Swift-BAT data at ~T+8+/-2 sec and ~T+48+/-1 sec. These spectral energy changes also coincide with intervals whose time-resolved spectral lag values are consistent with zero, at ~T+12+/-2 sec and ~T+50+/-2 sec. These results, which are robust across heuristic permutations of Swift-BAT energy channels and varying temporal bin resolution, have also been corroborated via independent analysis of Konus-Wind data. This potential discovery may provide the first observational evidence for an implicit connection between spectral lags and GRB emission mechanisms in the context of canonical fireball phenomenology. Future work includes exploring a subset of bursts with prompt optical emission to probe the unique or ubiquitous nature of this result.Comment: 6 pages, 3 figures. Contributed to the Proceedings of the Sixth Huntsville GRB Symposium. Edited by C.A. Meegan, N. Gehrels, and C. Kouvelioto

Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen.

Cryphonectria parasitica is the causal agent of chestnut blight, a fungal disease that almost entirely eliminated mature American chestnut from North America over a 50-year period. Here, we formally report the genome of C. parasitica EP155 using a Sanger shotgun sequencing approach. After finishing and integration with simple-sequence repeat markers, the assembly was 43.8 Mb in 26 scaffolds (L50 = 5; N50 = 4.0Mb). Eight chromosomes are predicted: five scaffolds have two telomeres and six scaffolds have one telomere sequence. In total, 11,609 gene models were predicted, of which 85% show similarities to other proteins. This genome resource has already increased the utility of a fundamental plant pathogen experimental system through new understanding of the fungal vegetative incompatibility system, with significant implications for enhancing mycovirus-based biological control

Transcript degradation and noise of small RNA-controlled genes in a switch activated network in Escherichia coli

Post-transcriptional regulatory processes may change transcript levels and affect cell-to-cell variability or noise. We study small-RNA downregulation to elucidate its effects on noise in the iron homeostasis network of Escherichia coli. In this network, the small-RNA RyhB undergoes stoichiometric degradation with the transcripts of target genes in response to iron stress. Using single-molecule fluorescence in situ hybridization, we measured transcript numbers of the RyhB-regulated genes sodB and fumA in individual cells as a function of iron deprivation. We observed a monotonic increase of noise with iron stress but no evidence of theoretically predicted, enhanced stoichiometric fluctuations in transcript numbers, nor of bistable behavior in transcript distributions. Direct detection of RyhB in individual cells shows that its noise is much smaller than that of these two targets, when RyhB production is significant. A generalized two-state model of bursty transcription that neglects RyhB fluctuations describes quantitatively the dependence of noise and transcript distributions on iron deprivation, enabling extraction of in vivo RyhB-mediated transcript degradation rates. The transcripts' threshold-linear behavior indicates that the effective in vivo interaction strength between RyhB and its two target transcripts is comparable. Strikingly, the bacterial cell response exhibits Furdependent, switch-like activation instead of a graded response to iron deprivation.Israel Science Foundation [514415 to J.S.]; Feinberg Foundation Visiting Faculty Program ( to J.M.-G.); MICINN (Spain) [FIS2012-32349 to J.M.-G.]; Intramural Research Program of the National Institutes of Health (to D.L.C.); National Cancer Institute (to D.L.C.); Center for Cancer Research (to D.L.C.); Siegfried and Irma Ullman Professorial Chair ( to J. S.). Funding for open access charge: Israel Science Foundation

Experimental induction of proventricular dilatation disease in cockatiels (Nymphicus hollandicus) inoculated with brain homogenates containing avian bornavirus 4

<p>Abstract</p> <p>Background</p> <p>Proventricular dilatation disease (PDD) is a fatal disorder of psittacine birds worldwide. The disease is characterized by lymphoplasmacytic infiltration of the central and peripheral nervous systems, leading to gastrointestinal motility and/or central nervous system dysfunction. Recently, we detected a significant association between avian bornavirus (ABV) infection and clinical signs of PDD in psittacines. However, it remains unclear whether ABV infection actually causes PDD. To address this question, we examined the impact of ABV inoculation on the cockatiel (<it>Nymphicus hollandicus</it>).</p> <p>Results</p> <p>Five cockatiels were inoculated via multiple routes (intramuscular, intraocular, intranasal, and oral) with a brain homogenate derived from either a PDD(+) avian bornavirus 4 (ABV4) (+) case (n = 3 inoculees) or from a PDD(-) ABV(-) control (n = 2 inoculees). The control birds remained free of clinical or pathological signs of PDD, and tested ABV(-) by RT-PCR and immunohistochemistry (IHC). In contrast, all three cockatiels inoculated with ABV4(+) brain homogenate developed gross and microscopic PDD lesions, and two exhibited overt clinical signs. In numerous tissues, ABV RT-PCR and sequence analysis demonstrated the presence of ABV4 RNA nearly identical to that in the inoculum. ABV was detected in the central nervous system of the three ABV-inoculees by IHC. Pyrosequencing to investigate the viral flora in the ABV4(+) inoculum uncovered 7 unique reads sharing 73–100% nucleotide sequence identity with previously identified ABV sequences and 24 reads sharing 40–89% amino acid sequence identity with viruses in the <it>Retroviridae </it>and <it>Astroviridae </it>families. Of these candidate viral species, only ABV RNA was recovered from tissues of the inoculated birds.</p> <p>Conclusion</p> <p>In this study, the clinical and pathological manifestations of PDD were induced by inoculation of cockatiels with brain homogenates containing avian bornavirus 4. By using high throughput pyrosequencing an in-depth view of the viral content of the inoculum was achieved, revealing that of 3 candidate virus families detected, only the presence of ABV RNA correlated with the development of PDD. This study provides evidence of a causal association between ABV4 infection and PDD in cockatiels.</p

Constraining Sources of Ultra High Energy Cosmic Rays Using High Energy Observations with the Fermi Satellite

We analyze the conditions that enable acceleration of particles to ultra-high energies, ~10^{20} eV (UHECRs). We show that broad band photon data recently provided by WMAP, ISOCAM, Swift and Fermi satellites, yield constraints on the ability of active galactic nuclei (AGN) to produce UHECRs. The high energy (MeV - GeV) photons are produced by Compton scattering of the emitted low energy photons and the cosmic microwave background or extra-galactic background light. The ratio of the luminosities at high and low photon energies can therefore be used as a probe of the physical conditions in the acceleration site. We find that existing data excludes core regions of nearby radio-loud AGN as possible acceleration sites of UHECR protons. However, we show that giant radio lobes are not excluded. We apply our method to Cen A, and show that acceleration of protons to ~10^{20} eV can only occur at distances >~ 100 kpc from the core.Comment: Extended discussion on former results; Accepted for publication in JCA

Monoamines, BDNF, Dehydroepiandrosterone, DHEA-Sulfate, and Childhood Depression—An Animal Model Study

Basal levels of monoamines and DHEA in four main limbic brain regions were measured in prepubertal Wistar Kyoto (WKY) rats (a putative animal model of childhood depression). Basal levels of “Brain-Derived Neurotrophic Factor (BDNF)” were also determined in two regions in the hippocampus, compared with Wistar strain controls. In the second phase, we examined the responsiveness of prepubertal WKY rats to different types of chronic antidepressant treatments: Fluoxetine, Desipramine, and dehydroepiandrosterone sulfate (DHEAS). WKY prepubertal rats exhibited different monoamine levels in the limbic system, reduced DHEA levels in the VTA and lower levels of BDNF in the hippocampus CA3 region compared to controls. In prepubertal WKY rats, only treatment with DHEAS produced a statistically significant decrease in immobility, compared to saline-administered controls in the forced swim test. Wistar controls were not affected by any antidepressant. The results imply that DHEA(S) and BDNF may be involved in the pathophysiology and pharmacotherapy of childhood depression