Possibility to realize spin-orbit-induced correlated physics in iridium fluorides

Recent theoretical predictions of "unprecedented proximity" of the electronic ground state of iridium fluorides to the SU(2) symmetric $j_{\mathrm{eff}}=1/2$ limit, relevant for superconductivity in iridates, motivated us to investigate their crystal and electronic structure. To this aim, we performed high-resolution x-ray powder diffraction, Ir L$_3$-edge resonant inelastic x-ray scattering, and quantum chemical calculations on Rb$_2$[IrF$_6$] and other iridium fluorides. Our results are consistent with the Mott insulating scenario predicted by Birol and Haule [Phys. Rev. Lett. 114, 096403 (2015)], but we observe a sizable deviation of the $j_{\mathrm{eff}}=1/2$ state from the SU(2) symmetric limit. Interactions beyond the first coordination shell of iridium are negligible, hence the iridium fluorides do not show any magnetic ordering down to at least 20 K. A larger spin-orbit coupling in iridium fluorides compared to oxides is ascribed to a reduction of the degree of covalency, with consequences on the possibility to realize spin-orbit-induced strongly correlated physics in iridium fluorides

First description of a Lophelia pertusa reef complex in Atlantic Canada

For the first time, we describe a cold-water coral reef complex in Atlantic Canada, discovered at the shelf break, in the mouth of the Laurentian Channel. The study is based on underwater video and sidescan sonar. The reef complex covered an area of approximately 490×1300 m, at 280–400 m depth. It consisted of several small mounds (< 3 m high) where the scleractinian Lophelia pertusa occurred as live colonies, dead blocks and skeletal rubble. On the mounds, a total of 67 live colonies occurred within 14 patches at 300–320 m depth. Most of these (67%) were small (< 20 cm high). Dead coral (rubble and blocks), dominated (88% of all coral observations). Extensive signs of damage by bottom-fishing gear were observed: broken and tilted coral colonies, over-turned boulders and lost fishing gear. Fisheries observer data indicated that the reef complex was subjected to heavy otter trawling annually between 1980 and 2000. In June 2004, a 15 km2 conservation area excluding all bottom-fishing was established. Current bottom fisheries outside the closure include otter trawling for redfish and anchored longlines for halibut. Vessel monitoring system data indicate that the closure is generally respected by the fishing industry.publishedVersio

Escherichia coli MazF Leads to the Simultaneous Selective Synthesis of Both “Death Proteins” and “Survival Proteins”

The Escherichia coli mazEF module is one of the most thoroughly studied toxin–antitoxin systems. mazF encodes a stable toxin, MazF, and mazE encodes a labile antitoxin, MazE, which prevents the lethal effect of MazF. MazF is an endoribonuclease that leads to the inhibition of protein synthesis by cleaving mRNAs at ACA sequences. Here, using 2D-gels, we show that in E. coli, although MazF induction leads to the inhibition of the synthesis of most proteins, the synthesis of an exclusive group of proteins, mostly smaller than about 20 kDa, is still permitted. We identified some of those small proteins by mass spectrometry. By deleting the genes encoding those proteins from the E. coli chromosome, we showed that they were required for the death of most of the cellular population. Under the same experimental conditions, which induce mazEF-mediated cell death, other such proteins were found to be required for the survival of a small sub-population of cells. Thus, MazF appears to be a regulator that induces downstream pathways leading to death of most of the population and the continued survival of a small sub-population, which will likely become the nucleus of a new population when growth conditions become less stressful

A Hydrolase of Trehalose Dimycolate Induces Nutrient Influx and Stress Sensitivity to Balance Intracellular Growth of Mycobacterium tuberculosis

SummaryChronic tuberculosis in an immunocompetent host is a consequence of the delicately balanced growth of Mycobacterium tuberculosis (Mtb) in the face of host defense mechanisms. We identify an Mtb enzyme (TdmhMtb) that hydrolyzes the mycobacterial glycolipid trehalose dimycolate and plays a critical role in balancing the intracellular growth of the pathogen. TdmhMtb is induced under nutrient-limiting conditions and remodels the Mtb envelope to increase nutrient influx but concomitantly sensitizes Mtb to stresses encountered in the host. Consistent with this, a ΔtdmhMtb mutant is more resilient to stress and grows to levels higher than those of wild-type in immunocompetent mice. By contrast, mutant growth is retarded in MyD88−/− mice, indicating that TdmhMtb provides a growth advantage to intracellular Mtb in an immunocompromised host. Thus, the effects and countereffects of TdmhMtb play an important role in balancing intracellular growth of Mtb in a manner that is directly responsive to host innate immunity

Galeorhinus galeus, Tope

Tope (Galeorhinus galeus) is a medium-sized (to 200 cm total length) bentho-pelagic shark, widespread in temperate waters in most oceans. It is present across the Northeast, Eastern Central, Southwest, and Southeast Atlantic, the Mediterranean Sea, the Eastern Indian, and across all of the Pacific, except in the Northwest Pacific. It occurs on continental shelves and upper to mid slopes from shallow inshore to well offshore to depths of 826 m, though most frequently to depths of 200 m. Genetic and tagging data support up to six separate subpopulations of Tope and while the species makes extensive movements within each of the subpopulations, there is no evidence of mixing between them. Tope has a particularly low biological productivity with a late age-at-maturity and triennial reproductive cycle. It is caught globally as target and bycatch in industrial and small-scale demersal and pelagic gillnet and longline fisheries, and to a lesser extent in trawl and hook-and-line fisheries. Tope is often retained for the meat and fins but is discarded or released in some areas, in line with regional management measures. Steep subpopulation and stock reductions of >80% over the past three generation lengths (79 years) have occurred in the Southwest Atlantic, southern Africa, and Australia. In the Northeast Atlantic, the subpopulation is estimated to have undergone a reduction of 76% over the past three generation lengths (79 years). The New Zealand stock is estimated to have undergone a reduction of 30?49% over the past three generation lengths (79 years). In the Northeast Pacific, a dramatic decline in the subpopulation occurred in the early 1940s, with no recovery until 1997?2004 when localized management led to a localized increase in abundance. The consistent steep subpopulation reductions across most of the analyzed subpopulations and stocks together with the lack of movement between the subpopulations are cause for serious concern. Management in Australia, probably aided by the immigration of large mature animals from New Zealand, appears to have stabilized that stock since 2000. The subpopulation in the Northeast Atlantic has been stable in recent years, possibly due to management measures, and there is some recovery in part of the Northeast Pacific. Release of this species is mandatory since 2011 off Canada. Release is mandatory in European Union waters for line-caught Tope. The global population is estimated to have undergone a reduction of 88% with the highest probability of >80% reduction over the last three generations (79 years) due to levels of exploitation, and Tope is assessed as Critically Endangered A2bd.Fil: Walker, T. I.. University of Melbourne; AustraliaFil: Rigby, C. L.. James Cook University; AustraliaFil: Pacoureau, N.. University Fraser Simon; CanadáFil: Ellis, J.. No especifíca;Fil: Kulka, D. W.. No especifíca;Fil: Chiaramonte, Gustavo Enrique. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; ArgentinaFil: Herman, K.. Georgia Aquarium; Estados Unido

Squalus acanthias, spiny dogfish

While there are reported subpopulations of Squalus acanthias (Linnaeus, 1758) elsewhere in the world, the North Pacific subpopulation is now considered a separate species, Squalus suckleyi (Girard, 1854) (see Ebert et al. 2010). Further taxonomic studies on this genus are required, including in relation to Mediterranean and Black Sea subpopulations. In Europe, three subpopulations are inferred to occur.Fil: Finucci, B.. National Institute of Water and Atmospheric Research; Nueva ZelandaFil: Cheok, J.. University Fraser Simon; CanadáFil: Chiaramonte, Gustavo Enrique. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia". Estación Hidrobiológica de Puerto Quequén (sede Quequén); ArgentinaFil: Cotton, C. F.. Florida State University; Estados UnidosFil: Dulvy, N. K.. University Fraser Simon; CanadáFil: Kulka, D. W.. No especifíca; ArgentinaFil: Neat, F. C.. No especifíca; ArgentinaFil: Pacoureau, N.. University Fraser Simon; CanadáFil: Rigby, C. L.. James Cook University; AustraliaFil: Tanaka, S.. No especifíca; ArgentinaFil: Walker, T. I.. University of Melbourne; Australi

Comparison of established and emerging biodosimetry assays

Rapid biodosimetry tools are required to assist with triage in the case of a large-scale radiation incident. Here, we aimed to determine the dose-assessment accuracy of the well-established dicentric chromosome assay (DCA) and cytokinesis-block micronucleus assay (CBMN) in comparison to the emerging &gamma;-H2AX foci and gene expression assays for triage mode biodosimetry and radiation injury assessment. Coded blood samples exposed to 10 X-ray doses (240 kVp, 1 Gy/min) of up to 6.4 Gy were sent to participants for dose estimation. Report times were documented for each laboratory and assay. The mean absolute difference (MAD) of estimated doses relative to the true doses was calculated. We also merged doses into binary dose categories of clinical relevance and examined accuracy, sensitivity and specificity of the assays. Dose estimates were reported by the first laboratories within 0.3-0.4 days of receipt of samples for the &gamma;-H2AX and gene expression assays compared to 2.4 and 4 days for the DCA and CBMN assays, respectively. Irrespective of the assay we found a 2.5-4-fold variation of interlaboratory accuracy per assay and lowest MAD values for the DCA assay (0.16 Gy) followed by CBMN (0.34 Gy), gene expression (0.34 Gy) and &gamma;-H2AX (0.45 Gy) foci assay. Binary categories of dose estimates could be discriminated with equal efficiency for all assays, but at doses &ge;1.5 Gy a 10% decrease in efficiency was observed for the foci assay, which was still comparable to the CBMN assay. In conclusion, the DCA has been confirmed as the gold standard biodosimetry method, but in situations where speed and throughput are more important than ultimate accuracy, the emerging rapid molecular assays have the potential to become useful triage tools

A Differential Effect of E. coli Toxin-Antitoxin Systems on Cell Death in Liquid Media and Biofilm Formation

Toxin-antitoxin (TA) modules are gene pairs specifying for a toxin and its antitoxin and are found on the chromosomes of many bacteria including pathogens. Here we report how each of five such TA systems in E. coli affect bacterial cell death differently in liquid media and during biofilm formation. Of all these systems, only the TA system mazEF mediated cell death both in liquid media and during biofilm formation. At the other extreme, as our results have revealed here, the TA system dinJ-YafQ is unique in that it is involved only in the death process during biofilm formation. Cell death governed by mazEF and dinJ-YafQ seems to participate in biofilm formation through a novel mechanism