Planar photonic crystal

We present results of guiding light in a single-line-defect planar photonic crystal (PPC) waveguide with 90° and 60° bends. The wave guiding is obtained by total internal reflection perpendicular to the plane of propagation and by the photonic band gap for the 2D photonic crystal in the plane. The results for photonic waveguiding are shown and demonstrated at 1.5 µm wavelength

VistaClara: an expression browser plug-in for Cytoscape

Summary: VistaClara is a plug-in for Cytoscape which provides a more flexible means to visualize gene and protein expression within a network context. An extended attribute browser is provided in the form of a graphical and interactive permutation matrix that resembles the heat map displays popular in gene-expression analysis. This extended browser permits a variety of display options and interactions not currently available in Cytoscape

Guiding and reflecting light by boundary material

We study effects of finite height and surrounding material on photonic crystal slabs of one- and two-dimensional photonic crystals with a pseudo-spectral method and finite difference time domain simulation methods. The band gap is shown to be strongly modified by the boundary material. As an application we suggest reflection and guiding of light by patterning the material on top/below the slab.Comment: 12 pages, 7 figure

Mosaic: making biological sense of complex networks

Summary: We present a Cytoscape plugin called Mosaic to support interactive network annotation, partitioning, layout and coloring based on gene ontology or other relevant annotations

Cytoscape ESP: simple search of complex biological networks

Summary: Cytoscape enhanced search plugin (ESP) enables searching complex biological networks on multiple attribute fields using logical operators and wildcards. Queries use an intuitive syntax and simple search line interface. ESP is implemented as a Cytoscape plugin and complements existing search functions in the Cytoscape network visualization and analysis software, allowing users to easily identify nodes, edges and subgraphs of interest, even for very large networks

PEN: a low energy test of lepton universality

Allowed charged $\pi$ meson decays are characterized by simple dynamics, few available decay channels, mainly into leptons, and extremely well controlled radiative and loop corrections. In that sense, pion decays represent a veritable triumph of the standard model (SM) of elementary particles and interactions. This relative theoretical simplicity makes charged pion decays a sensitive means for testing the underlying symmetries and the universality of weak fermion couplings, as well as for studying pion structure and chiral dynamics. Even after considerable recent improvements, experimental precision is lagging far behind that of the theoretical description for pion decays. We review the current state of experimental study of the pion electronic decay $\pi^+ \to e^+\nu_e(\gamma)$, or $\pi_{e2(\gamma)}$, where the $(\gamma)$ indicates inclusion and explicit treatment of radiative decay events. We briefly review the limits on non-SM processes arising from the present level of experimental precision in $\pi_{e2(\gamma)}$ decays. Focusing on the PEN experiment at the Paul Scherrer Institute (PSI), Switzerland, we examine the prospects for further improvement in the near term.Comment: 11 pages, 5 figures; paper presented at the XIII International Conference on Heavy Quarks and Leptons, 22-27 May 2016, Blacksburg, Virginia, US