Soft x-ray absorption spectroscopy of metalloproteins and high-valent metal-complexes at room temperature using free-electron lasers

X-ray absorption spectroscopy at the L-edge of 3d transition metals provides unique information on the local metal charge and spin states by directly probing 3d-derived molecular orbitals through 2p-3d transitions. However, this soft x-ray technique has been rarely used at synchrotron facilities for mechanistic studies of metalloenzymes due to the difficulties of x-ray-induced sample damage and strong background signals from light elements that can dominate the low metal signal. Here, we combine femtosecond soft x-ray pulses from a free-electron laser with a novel x-ray fluorescence-yield spectrometer to overcome these difficulties. We present L-edge absorption spectra of inorganic high-valent Mn complexes (Mn ∼ 6–15 mmol/l) with no visible effects of radiation damage. We also present the first L-edge absorption spectra of the oxygen evolving complex (Mn_4CaO_5) in Photosystem II (Mn < 1 mmol/l) at room temperature, measured under similar conditions. Our approach opens new ways to study metalloenzymes under functional conditions

Retrieving intracycle interference in angle-resolved laser-assisted photoemission from argon

We report on a combined experimental and theoretical study of XUV ionization of atomic argon in the presence of a near-infrared (NIR) laser field. Using a table-top source of wavelength-selected femtosecond XUV pulses in combination with a velocity map imaging spectrometer we record angle- and energy-resolved photoelectron distributions and simulate the experimental data by solving the time-dependent Schrödinger equation ab initio. In order to compare with the experimental data we average the calculated energy-angle probability distributions over the experimental focal volume for different values of the magnetic quantum number of the photoelectron. This averaging procedure washes out the intracycle interference pattern, which would otherwise be observed in the form of angular modulations of the photoelectron spectra. We recover these modulations experimentally and in the simulations by evaluating the difference between two averaged distributions that are obtained for slightly different NIR laser field intensities.Fil: Hummert, Johan. Max Born Institute; AlemaniaFil: Kubin, Markus. Max Born Institute; AlemaniaFil: López, Sebastián David. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Astronomía y Física del Espacio. - Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Astronomía y Física del Espacio; ArgentinaFil: Fuks, Johanna Ildemar. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Física de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Física de Buenos Aires; ArgentinaFil: Morales, Felipe. Max Born Institute; AlemaniaFil: Vrakking, Marc J. J.. Max Born Institute; AlemaniaFil: Kornilov, Oleg. Max Born Institute; AlemaniaFil: Arbó, Diego G.. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Astronomía y Física del Espacio. - Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Astronomía y Física del Espacio; Argentin

Soft x-ray absorption spectroscopy of metalloproteins and high-valent metal-complexes at room temperature using free-electron lasers

X-ray absorption spectroscopy at the L-edge of 3d transition metals provides unique information on the local metal charge and spin states by directly probing 3d-derived molecular orbitals through 2p-3d transitions. However, this soft x-ray technique has been rarely used at synchrotron facilities for mechanistic studies of metalloenzymes due to the difficulties of x-ray-induced sample damage and strong background signals from light elements that can dominate the low metal signal. Here, we combine femtosecond soft x-ray pulses from a free-electron laser with a novel x-ray fluorescence-yield spectrometer to overcome these difficulties. We present L-edge absorption spectra of inorganic high-valent Mn complexes (Mn ∼ 6–15 mmol/l) with no visible effects of radiation damage. We also present the first L-edge absorption spectra of the oxygen evolving complex (Mn_4CaO_5) in Photosystem II (Mn < 1 mmol/l) at room temperature, measured under similar conditions. Our approach opens new ways to study metalloenzymes under functional conditions

VocDoc, what happened to my voice? Towards automatically capturing vocal fatigue in the wild

Objective: Voice problems that arise during everyday vocal use can hardly be captured by standard outpatient voice assessments. In preparation for a digital health application to automatically assess longitudinal voice data ‘in the wild’ – the VocDoc, the aim of this paper was to study vocal fatigue from the speaker’s perspective, the healthcare professional’s perspective, and the ‘machine’s’ perspective. Methods: We collected data of four voice healthy speakers completing a 90-min reading task. Every 10 min the speakers were asked about subjective voice characteristics. Then, we elaborated on the task of elapsed speaking time recognition: We carried out listening experiments with speech and language therapists and employed random forests on the basis of extracted acoustic features. We validated our models speaker-dependently and speaker-independently and analysed underlying feature importances. For an additional, clinical application-oriented scenario, we extended our dataset for lecture recordings of another two speakers. Results: Self- and expert-assessments were not consistent. With mean F1 scores up to 0.78, automatic elapsed speaking time recognition worked reliably in the speaker-dependent scenario only. A small set of acoustic features – other than features previously reported to reflect vocal fatigue – was found to universally describe long-term variations of the voice. Conclusion: Vocal fatigue seems to have individual effects across different speakers. Machine learning has the potential to automatically detect and characterise vocal changes over time. Significance: Our study provides technical underpinnings for a future mobile solution to objectively capture pathological long-term voice variations in everyday life settings and make them clinically accessible

An X-ray spectroscopy study of structural stability of superhydrogenated pyrene derivatives

The stability of polycyclic aromatic hydrocarbons (PAHs) upon soft X-ray absorption is of crucial relevance for PAH survival in X-ray dominated regions (XDRs). PAH stability depends on molecular size but also on the degree of hydrogenation that is related to H2 formation in the interstellar medium (ISM). In this project, we intend to reveal the changes of electronic structure caused by hydrogenation and the impact of hydrogenation on the stability of the carbon backbone for cationic pyrene and its hydrogenated derivatives by analysis of near C K-edge soft X-ray photoions. In our experiments, the PAH cations were trapped in a cryogenic radiofrequency (RF) linear ion trap and exposed to monochromatic X-rays with energies from 279 eV to 300 eV. The photo-products were mass-analyzed by means of time-of-flight (TOF) spectroscopy. Partial ion yields (PIYs) were then studied as a function of photon energy. X-ray absorption spectra computed by time-dependent density functional theory (TD-DFT) aided the interpretation of the experimental results. A very good agreement between experimental data and TDDFT with short-range corrected (SRC) functionals for all PAH ions was reached. The near-edge X-ray absorption mass spectra (NEXAMS) exhibit clear peaks due to C 1s transitions to singly occupied molecular orbitals SOMO and to low-lying unoccupied molecular orbitals. In contrast to coronene cations, where hydrogen attachment drastically increases photostability of coronene, the influence of hydrogenation on photostability is substantially weaker for pyrene cations. Here, hydrogen attachment even destabilizes the molecular structure. An astrophysical model describes the half-life of PAH ions in interstellar environments

A comparative laboratory study of soft X-ray-induced ionization and fragmentation of five small PAH cations

The interaction between polycyclic aromatic hydrocarbon (PAH) radical cations and X-rays predominantly leads to photofragmentation, a process that strongly depends on PAH size and geometry. In our experiments, five prototypical PAHs were exposed to monochromatic soft X-ray photons with energies in the C K-edge regime. As a function of soft X-ray photon energy, photoion yields were obtained by means of time-of-flight mass spectrometry. The resulting near-edge X-ray absorption mass spectra were interpreted using time-dependent density functional theory (TD-DFT) with a short-range corrected functional. We found that the carbon backbone of anthracene$$^+$$(C$$_{14}$$H$$_{10}^+$$), pyrene$$^+$$(C$$_{16}$$H$$_{10}^+$$) and coronene$$^+$$(C$$_{24}$$H$$_{12}^+$$) can survive soft X-ray absorption, even though mostly intermediate size fragments are formed. In contrast, for hexahydropyrene$$^+$$(C$$_{16}$$H$$_{16}^+$$) and triphenylene$$^+$$(C$$_{18}$$H$$_{12}^+$$) molecular survival is not observed and the fragmentation pattern is dominated by small fragments. For a given excitation energy, molecular survival evidently does not simply correlate with PAH size but strongly depends on other PAH properties

An interpretation of the FAIR principles to guide implementations in the HMC digital ecosystem

Findable, accessible, interoperable and reusable (FAIR) set principles that determine best practice for managing the dissemination and ensuring longevity of digital resources. The Helmholtz Metadata Collaboration (HMC) provides guidance on metadata and related topics to those working in the Helmholtz ecosystem. Given the complexity - both of the FAIR principles, and the Helmholtz ecosystem - we interpret the principles so they can be directly applicable to the Helmholtz context. In this interpretation we consider managers, tool-developers, data managers, and researchers amongst others; and provide guidance to these disparate roles on applying the FAIR principles in their professional lives

Acute cholecystitis – early laparoskopic surgery versus antibiotic therapy and delayed elective cholecystectomy: ACDC-study

<p>Abstract</p> <p>Background</p> <p>Acute cholecystitis occurs frequently in the elderly and in patients with gall stones. Most cases of severe or recurrent cholecystitis eventually require surgery, usually laparoscopic cholecystectomy in the Western World. It is unclear whether an initial, conservative approach with antibiotic and symptomatic therapy followed by delayed elective surgery would result in better morbidity and outcome than immediate surgery. At present, treatment is generally determined by whether the patient first sees a surgeon or a gastroenterologist. We wish to investigate whether both approaches are equivalent. The primary endpoint is the morbidity until day 75 after inclusion into the study.</p> <p>Design</p> <p>A multicenter, prospective, randomized non-blinded study to compare treatment outcome, complications and 75-day morbidity in patients with acute cholecystitis randomized to laparoscopic cholecystectomy within 24 hours of symptom onset or antibiotic treatment with moxifloxacin and subsequent elective cholecystectomy. For consistency in both arms moxifloxacin, a fluorquinolone with broad spectrum of activity and high bile concentration is used as antibiotic. Duration: October 2006 – November 2008</p> <p>Organisation/Responsibility</p> <p>The trial was planned and is being conducted and analysed by the Departments of Gastroenterology and General Surgery at the University Hospital of Heidelberg according to the ethical, regulatory and scientific principles governing clinical research as set out in the Declaration of Helsinki (1989) and the Good Clinical Practice guideline (GCP).</p> <p>Trial Registration</p> <p>ClinicalTrials.gov NCT00447304</p