DFT/TD-DFT study on development and optimization of 1- anilino-3- phenyliminourea as a colorimetric chemosensor for Hg2+ recognition in aqueous medium

Mercury is a toxic metal that can be found everywhere - it is used in many products of our daily life and mercury contamination usually cannot be detected by any of the five human senses. Continuous exposure to mercury has severe implications neurologically, gastrointestinally and with respect to renal organ systems. This study was conducted to develop a portable and easy-to-use chemosensor with 1- anilino- 3-phenyliminourea (AP) for detecting Hg2+ ions in aqueous system. The sensitivity of AP in acting as a chemosensor was optimized based on solvent/co-solvent ratio and pH. The result showed that AP has a highly sensitivity against Hg2+ in DMSO/citrate buffer (8/2, v/v, pH = 4.0). The LOD of AP against Hg2+ ions was calculated at 69.02 mM. The stoichiometric ratio of AP-Hg2+ was 1:1 as determined by the Job’s plot analysis. COSMO-RS results show that DMSO and AP formed stronger hydrogen bonds due to the peaks of both appearing at greater positive and negative sigma profile values in the H-bond acceptor and H-bond donor regions, respectively. Molecular electrostatic potential, Fukui function and electronic transition were successfully performed using the DFT method to characterize and support the experimental data in predicting the interaction that occurs between AP and Hg2+ ions. The calculated HOMO-LUMO energy gaps of AP and Ap-Hg2+ were 3.72 eV and 1.95 eV, respectively. The result aligned with the UV-vis analysis where a redshift occurred after formation of the complex. Using naked eye observation, the developed test strip using the AP chemosensor also demonstrated a colour change in recognizing Hg2+ ions in aqueous media

Chemosensor development of Cu2+ recognition using 1,5-diphenylthiocarbazone: optimization, COSMO-RS and DFT studies

The sensitive and selective chemosensor for copper(II) ions (Cu2+) was successfully optimized using the 1,5-diphenylthiocarbazone (DPT) compound. The result showed that dimethyl sulfoxide (DMSO) in a 9:1 (DMSO:water) ratio at a pH of 3 was the optimum medium for DPT to act as chemosensor of Cu2+ recognition. The DPT chemosensor did not encounter any interference from other metal ions, including Fe3+, Ag+, Cr3+, Pb2+, Mg2+, Cd2+, Zn2+, K+, Ni2+ and Co2+. The presence of Cu2+ led to an absorption peak at 658 nm, where the color changed from cantaloupe to gray-green color indicating the interaction by the formation of the DPT-Cu complex in 2:1 stoichiometry. The theoretical σ-profile calculation using conductor-like screening model for real solvents (COSMO- RS) showed the compatibility of DPT with the DMSO solvent through hydrogen bonding. In the density functional theory (DFT) calculations, the formation energy of DPT and DPT-Cu were −1113.79645660 and −2435.71832681 a.u., respectively. Under optimal conditions, a detection limit of 6.08 μM for the DPT chemosensor for Cu2+ recognition can compete with the flame atomic absorption spectroscopy (FAAS) value of 6.21 μM. Finally, DPT was able to provide less expensive, more portable and convenient chemosensor for Cu2+ recognition in environmental water samples

COSMO-RS and DFT studies on development and optimization of quercetin as a chemosensor for Fe3þ recognition in aqueous medium

Quercetin is known as a bioflavonoid compound that has been successfully optimized to be a chemo- sensor probe for Fe3þ recognition. The sensitivity of quercetin towards Fe3þ increased in DMSO:deionized water with a 9:1 ratio at pH 4. There was also no significant interference from other metal ions, such as Kþ, Cr3þ, Agþ, Cd2þ, Mg2þ, Pb2þ, Co2þ, Ni2þ, Zn2þ and Cu2þ in the selectivity optimization. The detection limit of the probe was 20.5 mM. The stoichiometry of 1:1 quercetin:Fe3þ was calculated using the Job plot method. The sigma profile was calculated using COSMO-RS, which showed that quercetin formed stronger hydrogen bonds with the DMSO solvent. Density functional theory (DFT) calculations, such as molecular electrostatic potential (MEP) and the Fukui function, were performed to visualize and clarify the region of interaction between quercetin and Fe3þ. The TD-DFT method was successfully used to investigate the electronic properties of quercetin and quercetineFe3þ and it showed good agreement between experimental and theoretical results

Artocarpus altilis extracts as a foodborne pathogen and oxidation inhibitors: RSM, COSMO RS, and molecular docking approaches

Lipid oxidation and microbial contamination are the major factors contributing to food deterioration. Food additives like antioxidants and antibacterials can prevent food spoilage by delaying oxidation and preventing the growth of bacteria. Artocarpus altilis leaves exhibited biological properties that suggested its use as a new source of natural antioxidant and antimicrobial. Supercritical fuid extraction (SFE) was used to optimize the extraction of bioactive compounds from the leaves using response surface methodology (yield and antioxidant activity). The optimum SFE conditions were 50.5°C temperature, 3784psi pressure and 52min extraction time. Verifcation test results (Tukey’s test) showed that no signifcant diference between the expected and experimental DPPH activity and yield value (99%) were found. Gas-chromatography –mass spectrometry (GC-MS) analysis revealed three major bioactive compounds existed in A. altilis extract. The extract demonstrated antioxidant and antibacterial properties with 2,3-diphenyl-1-picrylhydrazyl (DPPH) scavenging activity, ferric reducing ability of plasma (FRAP), hydroxyl radical scavenging activity, tyrosinase mushrrom inhibition of 41.5%, 8.15±1.31 (µg of ascorbic acid equivalents), 32%, 37% and inhibition zone diameter of 0.766±0.06cm (B. cereus) and 1.27±0.12cm (E. coli). Conductor like screening model for real solvents (COSMO RS) was performed to explain the extraction mechanism of the major bioactive compounds during SFE. Molecular electrostatic potential (MEP) shows the probability site of nucleophilic and electrophilic attack during bacterial inhibition. Based on molecular docking study, non-covalent interactions are the main interaction occurring between the major bioactive compounds and bacteria (antibacterial inhibition)

Preliminary study in discovering 2-propen-1-one, 1-(2,4-dihydroxyphenyl)-3-(4-methoxyphenyl)- from syzygium aqueum leaves as a tyrosinase inhibitor in food product: experimental and theoretical approach

In this study, response surface methodology (RSM) in combination with central composite rotatable design (CCRD) were performed to optimize the extraction parameters for total phenolic content (TPC) on Syzygium aqueum (S. aqueum) leaves. The effect of operational conditions on the extraction of S. aqueum leaves using carbon dioxide (CO2) on TPC was investigated. The conditions used in the supercritical extraction with CO2 included temperatures of (40-70 °C), pressures (2200-4500 psi) and extraction time (40-100 min). The highest TPC (3.5893 mg GAE/mg) was obtained at optimum conditions of 55 °C, 3350 psi and 70 min. The major compound in the optimized crude extract was2-propen-1-one,1-(2,4Dihydroxyphenyl)-3-(4-methoxyphenyl)- (82.65 %) which was identified by GC-MS. COSMO-RS was introduced to study the σ-profile between CO2 and 2-propen-1-one,1-(2,4-Dihydroxyphenyl)-3-(4methoxyphenyl)-. Principal component analysis (PCA) was performed to classify major compound which exhibit similar chemical properties with selected control. 2-propen-1-one,1-(2,4-Dihydroxyphenyl)-3-(4methoxyphenyl)- has similar chemical properties with kaempferol as tyrosinase inhibitor. Molecular electrostatic potential (MEP) and molecular docking were plotted to investigate a recognition manner of 2-propen-1-one,1-(2,4-Dihydroxyphenyl)-3-(4-methoxyphenyl)-upon tyrosinase receptor

Structural, density functional computational studies and antibacterial screening on N,N′-bis-(4-hydroxy-α-methylsalicylidene)ethylenediamine nickel (II) complex

The molecular geometry, vibrational frequencies and gauge including atomic orbital (GIAO) 1H NMR chemical shift values of the title molecule, N,N′-bis-(4-hydroxy-α-methylsalicylidene)ethylenediamine nickel(II) complex, (C18H18N2NiO4) in the ground state have been calculated using density functional theory (DFT) method with general (GEN) and 6-311++G(d,p) basis set, respectively. The theoretical results were compared with the experimental data. Calculated results show that DFT can well reproduce the structure of the title compound. The theoretical vibrational frequency and 1H NMR chemical shift values show good agreement with experimental data. In addition, by using time dependent (TD)-DFT method, a good agreement between the predicted electronic absorption and experimental values are observed

Synthesis, characterization and preliminary study on acetylpyrazine N(4)butylthiosemicarbazone as a potential CDK2 inhibitor combined with DFT calculations

In this study, a new thiosemicarbazone ligand, namely acetylpyrazine N(4)butylthiosemicarbazone (APBT), was synthesized and characterized using 1H and 13C nuclear magnetic resonance (NMR) and Fourier transform infrared (FTIR) spectroscopies. Quantum chemical calculations were performed using density functional theory at the B3LYP/6-311++G(d,p) basis set level. The optimized molecular geometry of APBT is discussed based on X-ray structural reports from the literature. The assignment of the vibrational frequencies was done based on a potential energy distribution analysis using the vibrational energy distribution analysis (VEDA) 4 software. The energy gap between the highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) was evaluated to study the reactivity and stability of the compound. Global chemical reactivity and local reactivity descriptors of reactants and the product (APBT) were calculated to study the reaction mechanism. The region of interaction during the reaction to form APBT was determined using molecular electrostatic potential analysis. Finally, a preliminary study of the title compound as a cyclin-dependent kinase (CDK) inhibitor was further evaluated by performing a docking calculation

Artocarpus altilis extracts as a food-borne pathogen and oxidation inhibitors : RSM, COSMO RS, and molecular docking approaches

Lipid oxidation and microbial contamination are the major factors contributing to food deterioration. Food additives like antioxidants and antibacterials can prevent food spoilage by delaying oxidation and preventing the growth of bacteria. Artocarpus altilis leaves exhibited biological properties that suggested its use as a new source of natural antioxidant and antimicrobial. Supercritical fluid extraction (SFE) was used to optimize the extraction of bioactive compounds from the leaves using response surface methodology (yield and antioxidant activity). The optimum SFE conditions were 50.5 °C temperature, 3784 psi pressure and 52 min extraction time. Verification test results (Tukey’s test) showed that no significant difference between the expected and experimental DPPH activity and yield value (99%) were found. Gas-chromatography –mass spectrometry (GC-MS) analysis revealed three major bioactive compounds existed in A. altilis extract. The extract demonstrated antioxidant and antibacterial properties with 2,3-diphenyl-1-picrylhydrazyl (DPPH) scavenging activity, ferric reducing ability of plasma (FRAP), hydroxyl radical scavenging activity, tyrosinase mushrrom inhibition of 41.5%, 8.15 ± 1.31 (µg of ascorbic acid equivalents), 32%, 37% and inhibition zone diameter of 0.766 ± 0.06 cm (B. cereus) and 1.27 ± 0.12 cm (E. coli). Conductor like screening model for real solvents (COSMO RS) was performed to explain the extraction mechanism of the major bioactive compounds during SFE. Molecular electrostatic potential (MEP) shows the probability site of nucleophilic and electrophilic attack during bacterial inhibition. Based on molecular docking study, non-covalent interactions are the main interaction occurring between the major bioactive compounds and bacteria (antibacterial inhibition)