Identifying species complexes based on spatial and temporal clustering from joint dynamic species distribution models

Data-limited species are often grouped into a species complex to simplify management. Commonalities between species that may indicate if species can be adequately managed as a complex include the following: shared habitat utilization (e.g., overlapping fine-scale spatial distribution), synchrony in abundance trends, consistent fishing pressure or gear susceptibility, or life history parameters resulting in similar productivity. Using non-target rockfish species in the Gulf of Alaska as a case study, we estimate spatial and temporal similarities among species to develop species complexes using the vector autoregressive spatio-temporal (VAST) model, which is a joint dynamic species distribution model. Species groupings are identified using Ward\u27s hierarchical cluster analysis based on spatial and temporal species correlations. We then compare the spatial and temporal groupings with cluster analysis groupings that use exploitation and life history characteristics data. Based on the results, we conclude that there are some rockfish species that consistently group together, but the arrangement and number of clusters differ slightly depending on the data used. Developing species complexes for fisheries management requires a variety of analytical approaches including species distribution models and cluster analyses, and these can be applied across the full extent of available data sources

Changing Face of the Extrasolar Giant Planet, HD 209458b

High-resolution atmospheric flow simulations of the tidally-locked extrasolar giant planet, HD 209458b, show large-scale spatio-temporal variability. This is in contrast to the simple, permanent day/night (i.e., hot/cold) picture. The planet's global circulation is characterized by a polar vortex in motion around each pole and a banded structure corresponding to ~3 broad zonal (east-west) jets. For very strong jets, the circulation-induced temperature difference between moving hot and cold regions can reach up to ~1000 K, suggesting that atmospheric variability could be observed in the planet's spectral and photometric signatures.Comment: 6 pages, 1 ps figure, 2 low-res color figures (JPEG). Figure 3 updated. Contact authors for hi-res versions of color figures. Accepted for publication in ApJ

The SUMO Ligase Protein Inhibitor of Activated STAT 1 (PIAS1) is a constituent PML-NB protein that contributes to the intrinsic antiviral immune response to herpes simplex virus 1 (HSV-1)

Aspects of intrinsic antiviral immunity are mediated by promyelocytic leukaemia (PML)-nuclear body (PML-NB) constituent proteins. During herpesvirus infection, these antiviral proteins are independently recruited to nuclear domains that contain infecting viral genomes to cooperatively promote viral genome silencing. Central to the execution of this particular antiviral response is the small ubiquitin-like modifier (SUMO) signalling pathway. However, the participating SUMOylation enzymes are not fully characterized. We identify the SUMO ligase Protein Inhibitor of Activated STAT1 (PIAS1) as a constituent PML-NB protein. We show that PIAS1 localizes at PML-NBs in a SUMO interaction motif (SIM)-dependent manner that requires SUMOylated or SUMOylation competent PML. Following infection with herpes simplex virus 1 (HSV-1), PIAS1 is recruited to nuclear sites associated with viral genome entry in a SIM-dependent manner, consistent with the SIM-dependent recruitment mechanisms of other well characterized PML-NB proteins. In contrast to Daxx and Sp100, however, the recruitment of PIAS1 is enhanced by PML. PIAS1 promotes the stable accumulation of SUMO1 at nuclear sites associated with HSV-1 genome entry, whereas the accumulation of other evaluated PML-NB proteins occurs independently of PIAS1. We show that PIAS1 cooperatively contributes to HSV-1 restriction through mechanisms that are additive to those of PML and cooperative with those of PIAS4. The antiviral mechanisms of PIAS1 are counteracted by ICP0, the HSV-1 SUMO-targeted ubiquitin ligase, which disrupts the recruitment of PIAS1 to nuclear domains that contain infecting HSV-1 genomes through mechanisms that do not directly result in PIAS1 degradation

Inquiring Decision Systems: A Churchmanian Approach to Ethical Decision Making

Many business organizations seem to be doing everything but making ethical organizational decisions these days. In stark contrast, social enterprises are organizations that operate as businesses but are altruistic, humanitarian, and seek the goal of creating social value in effective, efficient and ethical ways. This paper applies principles of social enterprises to develop a multi-perspective framework for ethical business decision-making within a philosophical context provided by C. West Churchman’s inquiring systems in organizations

On Signatures of Atmospheric Features in Thermal Phase Curves of Hot Jupiters

Turbulence is ubiquitous in Solar System planetary atmospheres. In hot Jupiter atmospheres, the combination of moderately slow rotation and thick pressure scale height may result in dynamical weather structures with unusually large, planetary-size scales. Using equivalent-barotropic, turbulent circulation models, we illustrate how such structures can generate a variety of features in the thermal phase curves of hot Jupiters, including phase shifts and deviations from periodicity. Such features may have been spotted in the recent infrared phase curve of HD 189733b. Despite inherent difficulties with the interpretation of disk-integrated quantities, phase curves promise to offer unique constraints on the nature of the circulation regime present on hot Jupiters.Comment: 22 pages, 6 figures, 1 table, accepted for publication in Ap

Nutrient Content of Summer-Planted Oats after Corn Harvest and Grazing Performance

Annual forages provide producers with an alternative grazing source in the fall. A cover crop grazing study was conducted following corn harvest to evaluate the steer ADG and yield of summer sown oats and turnips planted after either high moisture corn or corn silage production. Th e gain of steers grazing oats aft er silage was 1.29 lb/day, while the gain of steers grazing corn residue and oats aft er high moisture corn was 0.72 lb/day. Average oat forage production aft er silage harvest was 2857 lb/acre, while oat production following corn harvest was 523 lb/ acre. Fall forage production of oats following corn silage harvest provided 133 lb of steer gain per acre, while corn residue plus oats following corn harvest provided 57 lb of steer gain per acre. Utilizing oats following silage harvest provides an opportunity for greater forage production and grazing as compared to following corn grain harvest

Pharmacological and Physiological Characterization of the Tremulous Jaw Movement Model of Parkinsonian Tremor: Potential Insights into the Pathophysiology of Tremor

Tremor is a cardinal symptom of parkinsonism, occurring early on in the disease course and affecting more than 70% of patients. Parkinsonian resting tremor occurs in a frequency range of 3–7 Hz and can be resistant to available pharmacotherapy. Despite its prevalence, and the significant decrease in quality of life associated with it, the pathophysiology of parkinsonian tremor is poorly understood. The tremulous jaw movement (TJM) model is an extensively validated rodent model of tremor. TJMs are induced by conditions that also lead to parkinsonism in humans (i.e., striatal DA depletion, DA antagonism, and cholinomimetic activity) and reversed by several antiparkinsonian drugs (i.e., DA precursors, DA agonists, anticholinergics, and adenosine A2A antagonists). TJMs occur in the same 3–7 Hz frequency range seen in parkinsonian resting tremor, a range distinct from that of dyskinesia (1–2 Hz), and postural tremor (8–14 Hz). Overall, these drug-induced TJMs share many characteristics with human parkinsonian tremor, but do not closely resemble tardive dyskinesia. The current review discusses recent advances in the validation of the TJM model, and illustrates how this model is being used to develop novel therapeutic strategies, both surgical and pharmacological, for the treatment of parkinsonian resting tremor

Whole genome sequencing of \u3ci\u3eMoraxella bovis\u3c/i\u3e strains from North America reveals two genotypes with different genetic determinants

Background: Moraxella bovis and Moraxella bovoculi both associate with infectious bovine keratoconjunctivitis (IBK), an economically significant and painful ocular disease that affects cattle worldwide. There are two genotypes of M. bovoculi (genotypes 1 and 2) that differ in their gene content and potential virulence factors, although neither have been experimentally shown to cause IBK. M. bovis is a causative IBK agent, however, not all strains carry a complete assortment of known virulence factors. The goals of this study were to determine the population structure and depth of M. bovis genomic diversity, and to compare core and accessory genes and predicted outer membrane protein profiles both within and between M. bovis and M. bovoculi. Results: Phylogenetic trees and bioinformatic analyses of 36 M. bovis chromosomes sequenced in this study and additional available chromosomes of M. bovis and both genotype 1 and 2 M. bovoculi, showed there are two genotypes (1 and 2) of M. bovis. The two M. bovis genotypes share a core of 2015 genes, with 121 and 186 genes specific to genotype 1 and 2, respectively. The two genotypes differ by their chromosome size and prophage content, encoded protein variants of the virulence factor hemolysin, and by their affiliation with different plasmids. Eight plasmid types were identified in this study, with types 1 and 6 observed in 88 and 56% of genotype 2 strains, respectively, and absent from genotype 1 strains. Only type 1 plasmids contained one or two gene copies encoding filamentous haemagglutinin- like proteins potentially involved with adhesion. A core of 1403 genes was shared between the genotype 1 and 2 strains of both M. bovis and M. bovoculi, which encoded a total of nine predicted outer membrane proteins. Conclusions: There are two genotypes of M. bovis that differ in both chromosome content and plasmid profiles and thus may not equally associate with IBK. Immunological reagents specifically targeting select genotypes of M. bovis, or all genotypes of M. bovis and M. bovoculi together could be designed from the outer membrane proteins identified in this study