Üsküdar mesireleri

Taha Toros Arşivi, Dosya No: 63-Salacak-Üsküdarİstanbul Kalkınma Ajansı (TR10/14/YEN/0033) İstanbul Development Agency (TR10/14/YEN/0033

A population of the Japanese giant salamander Andrias japonicus (Amphibia: Caudata) inhabiting a small stream flowing through a wetland upstream of a dam: A study on the population of small individuals and larval growth in the field

広島県廿日市市飯山のダム上流の湿地を流れる小河川に生息するオオサンショウウオAndrias japonicusの個体群について報告する。本産地は標高が775–795mあり，本種の生息地で最も標高の高い部類に入る。飯山貯水池は1932年より水力発電ダム湖として建造され，その上流は約90年間ダムの下流域と隔離されている。水位の低下した2001年以降は長年人の手の加わっていない湿地となっている。2017–2020年ののべ17日間に渡る調査で，0歳から1歳，2歳と考えられる幼生が多数見つかり，全長210mmの幼体や326–680mmの成体，繁殖巣穴も見つかった。これは独立した繁殖個体群として世代交代している証拠でもある。この個体群からは全長700mmを越える個体が見つかっておらず，全長が小さい傾向がある。また，0歳幼生の全長と確認日の関係を見ると，全長46mmで離散した0歳幼生が，6月から8月にかけて急成長して75mmに達し，10月以降はほとんど成長しないで翌春を迎えることを示唆していた。幼生は主にダム湖であった当時の名残の水草，ヒルムシロPotamogeton distinctusの中から見つかる傾向がある点も特異な点である。ダム湖へ直接流入する源流域の小河川で本種が持続的に繁殖している例として本産地と個体群は稀少な存在であると言える。Here, we describe a population of the Japanese giant salamander Andrias japonicus inhabiting upstream of the Iinoyama Reservoir in Iinoyama, Hatsukaichi City, Hiroshima Prefecture, Japan. The locality is situated at 775–795 m above the sea level and is one of the highest localities in the habitat of this salamander. The Iinoyama Reservoir was originally built as a hydroelectric dam lake in 1932, and its upstream part has remained isolated for nearly 90 years. Since 2001, when the water level dropped, it has become a wetland, albeit not used by human for many years. In surveys over 17 days during 2017–2020, many zero-, first-, and second-year larvae; a juvenile 210 mm in total length (TL); and adults (326–680 mm in TL) as well as a breeding nest were found, providing evidence that the salamanders in this regions constitute an independent breeding population. No individuals measuring over 700 mm in TL were found in this population, and the overall TL tended to be low. Considering the association between the total length and the date of discovery of zero-year larvae, these larvae likely dispersed when they were about 46 mm and rapidly grew from June to August to reach 75 mm; from October, however, they barely grew until the next spring. Interestingly, the larvae were found in the remnants of the dam lake, near the aquatic plant Potamogeton distinctus. The described locality and population present a rare example of continuous breeding of the Japanese giant salamander in a small stream directly flowing into the dam lake

Long-term survival of two patients with esophageal neuroendocrine carcinoma who underwent multidisciplinary therapy

　Esophageal neuroendocrine carcinoma （ECC） is rare and has a poor prognosis when presenting with vascular invasion and distant metastasis from an early stage. Multidisciplinary therapy with surgery, chemotherapy, and radiation therapy may prolong survival in patients with advanced ECC, but there is as yet no standard therapy for advanced ECC. We treated two patients who have achieved long-term survival （＞ 4 years） who underwent multidisciplinary therapy, including chemotherapy, for ECC. Our experience with these two cases suggests that multidisciplinary therapy, including chemotherapy, may be effective for treating ECC at an advanced stage

A Functional SNP in BNC2 Is Associated with Adolescent Idiopathic Scoliosis

Adolescent idiopathic scoliosis (AIS) is the most common spinal deformity. We previously conducted a genome-wide association study (GWAS) and detected two loci associated with AIS. To identify additional loci, we extended our GWAS by increasing the number of cohorts (2,109 affected subjects and 11,140 control subjects in total) and conducting a whole-genome imputation. Through the extended GWAS and replication studies using independent Japanese and Chinese populations, we identified a susceptibility locus on chromosome 9p22.2 (p = 2.46 × 10−13; odds ratio = 1.21). The most significantly associated SNPs were in intron 3 of BNC2, which encodes a zinc finger transcription factor, basonuclin-2. Expression quantitative trait loci data suggested that the associated SNPs have the potential to regulate the BNC2 transcriptional activity and that the susceptibility alleles increase BNC2 expression. We identified a functional SNP, rs10738445 in BNC2, whose susceptibility allele showed both higher binding to a transcription factor, YY1 (yin and yang 1), and higher BNC2 enhancer activity than the non-susceptibility allele. BNC2 overexpression produced body curvature in developing zebrafish in a gene-dosage-dependent manner. Our results suggest that increased BNC2 expression is implicated in the etiology of AIS

Induction of epigenetic variation in Arabidopsis by over-expression of DNA METHYLTRANSFERASE1 (MET1)

Epigenetic marks such as DNA methylation and histone modification can vary among plant accessions creating epi-alleles with different levels of expression competence. Mutations in epigenetic pathway functions are powerful tools to induce epigenetic variation. As an alternative approach, we investigated the potential of over-expressing an epigenetic function, using DNA METHYLTRANSFERASE1 (MET1) for proof-of-concept. In Arabidopsis thaliana, MET1 controls maintenance of cytosine methylation at symmetrical CG positions. At some loci, which contain dense DNA methylation in CG- and non-CG context, loss of MET1 causes joint loss of all cytosines methylation marks. We find that over-expression of both catalytically active and inactive versions of MET1 stochastically generates new epi-alleles at loci encoding transposable elements, non-coding RNAs and proteins, which results for most loci in an increase in expression. Individual transformants share some common phenotypes and genes with altered gene expression. Altered expression states can be transmitted to the next generation, which does not require the continuous presence of the MET1 transgene. Long-term stability and epigenetic features differ for individual loci. Our data show that over-expression of MET1, and potentially of other genes encoding epigenetic factors, offers an alternative strategy to identify epigenetic target genes and to create novel epi-alleles

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1.

In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field

Hierarchical Summarizing and Evaluating for Web Pages

Abstract. In this investigation we propose a novel summarization method of Web pages using hierarchical expression. We discuss close relationship between summarization and hierarchical clustering to obtain the results, and we examine how to evaluate hierarchical summarization based on both correlation and structural aspects. We describe some experimental results using NTCIR Web documents to examine our method.

Correlation between overall survival and quality of life in colon cancer patients with chemotherapy

Abstract Background Patients presenting with inoperable colon cancer at first onset (ICF) or at time of relapse (ICR) are considered in unrecoverable. The therapeutic goal for unrecoverable cancer is to prolong overall survival (OS) and maintain a high quality of life (QOL). As data on objective indicators of QOL in cancer patients, such as length of hospitalisation (LOH), outpatient consultation times (OCT), and hospital-free survival (HFS), is limited, this study compared ICF and ICR with respect to OS and QOL over the entire clinical course. Methods We retrospectively evaluated 90 inoperable colon cancer patients with chemotherapy and compared ICF and ICR in terms of OS, LOH, OCT, and HFS. Results Patients with ICF had a worse OS than those with ICR. In patients with ICF and ICR, OS and LOH were not correlated but OS and OCT and OS and HFS were strongly correlated. In patients with ICF and ICR, OCT and HFS accounted for approximately 8% and 90% of their OS, respectively. Conclusions The LOH, OCT, and HFS are important factors for evaluating objective QOL of patients with inoperable colon cancer and should be considered when making treatment decisions