1,235 research outputs found
Differential role for trehalose metabolism in salt-stressed maize
Little is known about how salt impacts primary metabolic pathways of C4 plants, particularly related to kernel development and seed set. Osmotic stress was applied to maize (Zea mays) B73 by irrigation with increasing concentrations of NaCl from the initiation of floral organs until 3 d after pollination. At silking, photosynthesis was reduced to only 2% of control plants. Salt treatment was found to reduce spikelet growth, silk growth, and kernel set. Osmotic stress resulted in higher concentrations of sucrose (Suc) and hexose sugars in leaf, cob, and kernels at silking, pollination, and 3 d after pollination. Citric acid cycle intermediates were lower in salt-treated tissues, indicating that these sugars were unavailable for use in respiration. The sugar-signaling metabolite trehalose-6-phosphate was elevated in leaf, cob, and kernels at silking as a consequence of salt treatment but decreased thereafter even as Suc levels continued to rise. Interestingly, the transcripts of trehalose pathway genes were most affected by salt treatment in leaf tissue. On the other hand, transcripts of the SUCROSE NONFERMENTING-RELATED KINASE1 (SnRK1) marker genes were most affected in reproductive tissue. Overall, both source and sink strength are reduced by salt, and the data indicate that trehalose-6-phosphate and SnRK1 may have different roles in source and sink tissues. Kernel abortion resulting from osmotic stress is not from a lack of carbohydrate reserves but from the inability to utilize these energy reserves
Theory of Systematic Computational Error in Free Energy Differences
Systematic inaccuracy is inherent in any computational estimate of a
non-linear average, due to the availability of only a finite number of data
values, N. Free energy differences (DF) between two states or systems are
critically important examples of such averages in physical, chemical and
biological settings. Previous work has demonstrated, empirically, that the
``finite-sampling error'' can be very large -- many times kT -- in DF estimates
for simple molecular systems. Here, we present a theoretical description of the
inaccuracy, including the exact solution of a sample problem, the precise
asymptotic behavior in terms of 1/N for large N, the identification of
universal law, and numerical illustrations. The theory relies on corrections to
the central and other limit theorems, and thus a role is played by stable
(Levy) probability distributions.Comment: 5 pages, 4 figure
Intercomparison of an Aerosol Chemical Speciation Monitor (ACSM) with ambient fine aerosol measurements in downtown Atlanta, Georgia
Currently, there are a limited number of field studies that evaluate the
long-term performance of the Aerodyne Aerosol Chemical Speciation Monitor
(ACSM) against established monitoring networks. In this study, we present
seasonal intercomparisons of the ACSM with collocated fine aerosol
(PM<sub>2.5</sub>) measurements at the Southeastern Aerosol Research and
Characterization (SEARCH) Jefferson Street (JST) site near downtown Atlanta,
GA, during 2011–2012. Intercomparison of two collocated ACSMs resulted in
strong correlations (<i>r</i><sup>2</sup> > 0.8) for all chemical species,
except chloride (<i>r</i><sup>2</sup> = 0.21) indicating that ACSM instruments are
capable of stable and reproducible operation. In general, speciated ACSM mass
concentrations correlate well (<i>r</i><sup>2</sup> > 0.7) with the
filter-adjusted continuous measurements from JST, although the correlation
for nitrate is weaker (<i>r</i><sup>2</sup> = 0.55) in summer. Correlations of the ACSM
NR-PM<sub>1</sub> (non-refractory particulate matter with aerodynamic diameter
less than or equal to 1 μm) plus elemental carbon (EC) with tapered element oscillating microbalance (TEOM) PM<sub>2.5</sub> and Federal Reference Method (FRM) PM<sub>1</sub> mass are strong
with <i>r</i><sup>2</sup> > 0.7 and <i>r</i><sup>2</sup> > 0.8,
respectively. Discrepancies might be attributed to evaporative losses of
semi-volatile species from the filter measurements used to adjust the
collocated continuous measurements. This suggests that adjusting the ambient
aerosol continuous measurements with results from filter analysis introduced
additional bias to the measurements. We also recommend to calibrate the
ambient aerosol monitoring instruments using aerosol standards rather than
gas-phase standards. The fitting approach for ACSM relative ionization for
sulfate was shown to improve the comparisons between ACSM and collocated
measurements in the absence of calibrated values, suggesting the importance of
adding sulfate calibration into the ACSM calibration routine
Who Meets Whom: Access and Lobbying During the Coalition Years
In 2010, the incoming Coalition government announced that it would publish details of meetings between ministers and outside interests. We have collated and coded these data and, in this article, describe patterns of access between 2010 and 2015. In some respects, access is notably fragmented. No single organisation attends more than 2.5% of the 6292 meetings held by ministers. On the contrary, business, collectively, attends fully 45% of all meetings: more than twice the share of any other category of organisation. We also find evidence of distinctive policy communities characterised by high levels of access between particular interests and ministers within specific departments
Multimeric antibodies from antigen-specific humanIgM+memory B cells restrictPlasmodiumparasites
Efficient Passive ICS Device Discovery and Identification by MAC Address Correlation
Owing to a growing number of attacks, the assessment of Industrial Control
Systems (ICSs) has gained in importance. An integral part of an assessment is
the creation of a detailed inventory of all connected devices, enabling
vulnerability evaluations. For this purpose, scans of networks are crucial.
Active scanning, which generates irregular traffic, is a method to get an
overview of connected and active devices. Since such additional traffic may
lead to an unexpected behavior of devices, active scanning methods should be
avoided in critical infrastructure networks. In such cases, passive network
monitoring offers an alternative, which is often used in conjunction with
complex deep-packet inspection techniques. There are very few publications on
lightweight passive scanning methodologies for industrial networks. In this
paper, we propose a lightweight passive network monitoring technique using an
efficient Media Access Control (MAC) address-based identification of industrial
devices. Based on an incomplete set of known MAC address to device
associations, the presented method can guess correct device and vendor
information. Proving the feasibility of the method, an implementation is also
introduced and evaluated regarding its efficiency. The feasibility of
predicting a specific device/vendor combination is demonstrated by having
similar devices in the database. In our ICS testbed, we reached a host
discovery rate of 100% at an identification rate of more than 66%,
outperforming the results of existing tools.Comment: http://dx.doi.org/10.14236/ewic/ICS2018.
A Comparative Molecular Dynamics Study of Methylation State Specificity of JMJD2A
Histone modifications have great importance in epigenetic regulation. JMJD2A is a histone demethylase which is selective for di- and trimethyl forms of residues Lys9 and Lys36 of Histone 3 tail (H3K9 and H3K36). We present a molecular dynamics simulations of mono-, di- and trimethylated histone tails in complex with JMJD2A catalytic domain to gain insight into how JMJD2A discriminates between the methylation states of H3K9. The methyl groups are located at specific distances and orientations with respect to Fe(II) in methylammonium binding pocket. For the trimethyllysine the mechanism which provides the effectual orientation of methyl groups is the symmetry, whereas for the dimethyllysine case the determining factors are the interactions between methyllysine head and its environment and subsequently the restriction on angular motion. The occurrence frequency of methyl groups in a certain proximity of Fe(II) comes out as the explanation of the enzyme activity difference on di- and tri-methylated peptides. Energy analysis suggests that recognition is mostly driven by van der Waals and followed by Coulombic interactions in the enzyme-substrate interface. The number (mono, di or tri) and orientations of methyl groups and water molecules significantly affect the extent of van der Waals interaction strengths. Hydrogen bonding analysis suggests that the interaction between JMJD2A and its substrates mainly comes from main chain-side chain interactions. Binding free energy analysis points out Arg8 as an important residue forming an intra-substrate hydrogen bond with tri and dimethylated Lys9 of the H3 chain. Our study provides new insights into how JMJD2A discriminates between its substrates from both a structural and dynamical point of view
Competing for the Platform: How Organized Interests affect Party Positioning in the United States
What explains which groups are included in a party coalition in any given election cycle? Recent advances in political party theory suggest that policy demanders comprise parties, and that the composition of a party coalition varies from election to election. We theorize three conditions under which parties articulate an interest group?s preferred positions in its quadrennial platform: when groups are ideologically proximate to the party median, when groups display party loyalty, and when groups are flush with resources. Using computer-assisted content analysis on a unique and rich data source, we examine three cycles of testimony that 80 organized groups provided to the Democratic Party. The analysis compares group requests with the content of Democratic and Republican National Committee platforms in 1996, 2000, and 2004. Results show that parties reward loyal groups and those that are ideologically proximate to the party, but offer no confirmation of a resource effect
Intercomparison of an Aerosol Chemical Speciation Monitor (ACSM) with ambient fine aerosol measurements in downtown Atlanta, Georgia
Currently, there are a limited number of field studies that evaluate the long-term performance of the Aerodyne Aerosol Chemical Speciation Monitor (ACSM) against established monitoring networks. In this study, we present seasonal intercomparisons of the ACSM with collocated fine aerosol (PM2.5) measurements at the Southeastern Aerosol Research and Characterization (SEARCH) Jefferson Street (JST) site near downtown Atlanta, GA, during 2011–2012. Intercomparison of two collocated ACSMs resulted in strong correlations (r2 > 0.8) for all chemical species, except chloride (r2 = 0.21) indicating that ACSM instruments are capable of stable and reproducible operation. In general, speciated ACSM mass concentrations correlate well (r2 > 0.7) with the filter-adjusted continuous measurements from JST, although the correlation for nitrate is weaker (r2 = 0.55) in summer. Correlations of the ACSM NR-PM1 (non-refractory particulate matter with aerodynamic diameter less than or equal to 1 μm) plus elemental carbon (EC) with tapered element oscillating microbalance (TEOM) PM2.5 and Federal Reference Method (FRM) PM1 mass are strong with r2 > 0.7 and r2 > 0.8, respectively. Discrepancies might be attributed to evaporative losses of semi-volatile species from the filter measurements used to adjust the collocated continuous measurements. This suggests that adjusting the ambient aerosol continuous measurements with results from filter analysis introduced additional bias to the measurements. We also recommend to calibrate the ambient aerosol monitoring instruments using aerosol standards rather than gas-phase standards. The fitting approach for ACSM relative ionization for sulfate was shown to improve the comparisons between ACSM and collocated measurements in the absence of calibrated values, suggesting the importance of adding sulfate calibration into the ACSM calibration routine
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