Deep Learning for Semantic Part Segmentation with High-Level Guidance

In this work we address the task of segmenting an object into its parts, or semantic part segmentation. We start by adapting a state-of-the-art semantic segmentation system to this task, and show that a combination of a fully-convolutional Deep CNN system coupled with Dense CRF labelling provides excellent results for a broad range of object categories. Still, this approach remains agnostic to high-level constraints between object parts. We introduce such prior information by means of the Restricted Boltzmann Machine, adapted to our task and train our model in an discriminative fashion, as a hidden CRF, demonstrating that prior information can yield additional improvements. We also investigate the performance of our approach ``in the wild'', without information concerning the objects' bounding boxes, using an object detector to guide a multi-scale segmentation scheme. We evaluate the performance of our approach on the Penn-Fudan and LFW datasets for the tasks of pedestrian parsing and face labelling respectively. We show superior performance with respect to competitive methods that have been extensively engineered on these benchmarks, as well as realistic qualitative results on part segmentation, even for occluded or deformable objects. We also provide quantitative and extensive qualitative results on three classes from the PASCAL Parts dataset. Finally, we show that our multi-scale segmentation scheme can boost accuracy, recovering segmentations for finer parts.Comment: 11 pages (including references), 3 figures, 2 table

Deep Spatio-Temporal Random Fields for Efficient Video Segmentation.

In this work we introduce a time- and memory-efficient method for structured prediction that couples neuron decisions across both space at time. We show that we are able to perform exact and efficient inference on a densely-connected spatio-temporal graph by capitalizing on recent advances on deep Gaussian Conditional Random Fields (GCRFs). Our method, called VideoGCRF is (a) efficient, (b) has a unique global minimum, and (c) can be trained end-to-end alongside contemporary deep networks for video understanding. We experiment with multiple connectivity patterns in the temporal domain, and present empirical improvements over strong baselines on the tasks of both semantic and instance segmentation of videos. Our implementation is based on the Caffe2 framework and will be available at https://github.com/siddharthachandra/gcrf-v3.0

Deep Filter Banks for Texture Recognition, Description, and Segmentation

Visual textures have played a key role in image understanding because they convey important semantics of images, and because texture representations that pool local image descriptors in an orderless manner have had a tremendous impact in diverse applications. In this paper we make several contributions to texture understanding. First, instead of focusing on texture instance and material category recognition, we propose a human-interpretable vocabulary of texture attributes to describe common texture patterns, complemented by a new describable texture dataset for benchmarking. Second, we look at the problem of recognizing materials and texture attributes in realistic imaging conditions, including when textures appear in clutter, developing corresponding benchmarks on top of the recently proposed OpenSurfaces dataset. Third, we revisit classic texture represenations, including bag-of-visual-words and the Fisher vectors, in the context of deep learning and show that these have excellent efficiency and generalization properties if the convolutional layers of a deep model are used as filter banks. We obtain in this manner state-of-the-art performance in numerous datasets well beyond textures, an efficient method to apply deep features to image regions, as well as benefit in transferring features from one domain to another

Enhanced fitness and renal function in Type 2 diabetes.

Aims To investigate the renal effects of fitness in people with diabetes with mild renal dysfunction. Methods The effect of a 12-week exercise programme on estimated GFR in 128 people with diabetes was evaluated. Results All cardiometabolic variables improved after 12 weeks of supervised exercise. Although there was a modest 3.9% increase in estimated GFR from baseline in the 128 people who completed the study, those with baseline chronic kidney disease stages 2 and 3 were found to have significant (6 and 12%, respectively; p \u3c 0.01) improvements in post-exercise estimated GFR. Moreover, 42% of the people with chronic kidney disease stage 3 improved to chronic kidney disease stage 2 after the intervention. Conclusion Short-term exercise improves renal function in those with more moderate baseline chronic kidney disease. Thus, renal function appears to be responsive to enhanced physical fitness. Being a strong and modifiable risk factor, enhanced fitness should be considered a non-pharmacological adjunct in the management of diabetic kidney disease

Weakly-supervised mesh-convolutional hand reconstruction in the wild

We introduce a simple and effective network architecture for monocular 3D hand pose estimation consisting of an image encoder followed by a mesh convolutional decoder that is trained through a direct 3D hand mesh reconstruction loss. We train our network by gathering a large-scale dataset of hand action in YouTube videos and use it as a source of weak supervision. Our weakly-supervised mesh convolutions-based system largely outperforms state-of-the-art methods, even halving the errors on the in the wild benchmark. The dataset and additional resources are available at https://arielai.com/mesh_hands

Harnessing uncertainty in domain adaptation for mri prostate lesion segmentation

The need for training data can impede the adoption of novel imaging modalities for learning-based medical image analysis. Domain adaptation methods partially mitigate this problem by translating training data from a related source domain to a novel target domain, but typically assume that a one-to-one translation is possible. Our work addresses the challenge of adapting to a more informative target domain where multiple target samples can emerge from a single source sample. In particular we consider translating from mp-MRI to VERDICT, a richer MRI modality involving an optimized acquisition protocol for cancer characterization. We explicitly account for the inherent uncertainty of this mapping and exploit it to generate multiple outputs conditioned on a single input. Our results show that this allows us to extract systematically better image representations for the target domain, when used in tandem with both simple, CycleGAN-based baselines, as well as more powerful approaches that integrate discriminative segmentation losses and/or residual adapters. When compared to its deterministic counterparts, our approach yields substantial improvements across a broad range of dataset sizes, increasingly strong baselines, and evaluation measures

BLSM: A Bone-Level Skinned Model of the Human Mesh

We introduce BLSM, a bone-level skinned model of the human body mesh where bone scales are set prior to template synthesis, rather than the common, inverse practice. BLSM first sets bone lengths and joint angles to specify the skeleton, then specifies identity-specific surface variation, and finally bundles them together through linear blend skinning. We design these steps by constraining the joint angles to respect the kinematic constraints of the human body and by using accurate mesh convolution-based networks to capture identity-specific surface variation. We provide quantitative results on the problem of reconstructing a collection of 3D human scans, and show that we obtain improvements in reconstruction accuracy when comparing to a SMPL-type baseline. Our decoupled bone and shape representation also allows for out-of-box integration with standard graphics packages like Unity, facilitating full-body AR effects and image-driven character animation. Additional results and demos are available from the project webpage: http://arielai.com/blsm

Unsupervised Domain Adaptation with Semantic Consistency across Heterogeneous Modalities for MRI Prostate Lesion Segmentation

Any novel medical imaging modality that differs from previous protocols e.g. in the number of imaging channels, introduces a new domain that is heterogeneous from previous ones. This common medical imaging scenario is rarely considered in the domain adaptation literature, which handles shifts across domains of the same dimensionality. In our work we rely on stochastic generative modeling to translate across two heterogeneous domains at pixel space and introduce two new loss functions that promote semantic consistency. Firstly, we introduce a semantic cycle-consistency loss in the source domain to ensure that the translation preserves the semantics. Secondly, we introduce a pseudo-labelling loss, where we translate target data to source, label them by a source-domain network, and use the generated pseudo-labels to supervise the target-domain network. Our results show that this allows us to extract systematically better representations for the target domain. In particular, we address the challenge of enhancing performance on VERDICT-MRI, an advanced diffusion-weighted imaging technique, by exploiting labeled mp-MRI data. When compared to several unsupervised domain adaptation approaches, our approach yields substantial improvements, that consistently carry over to the semi-supervised and supervised learning settings

DenseReg: fully convolutional dense shape regression in-the-wild

In this paper we propose to learn a mapping from image pixels into a dense template grid through a fully convolutional network. We formulate this task as a regression problem and train our network by leveraging upon manually annotated facial landmarks “in-the-wild”. We use such landmarks to establish a dense correspondence field between a three-dimensional object template and the input image, which then serves as the ground-truth for training our regression system. We show that we can combine ideas from semantic segmentation with regression networks, yielding a highly-accurate ‘quantized regression’ architecture. Our system, called DenseReg, allows us to estimate dense image-to-template correspondences in a fully convolutional manner. As such our network can provide useful correspondence information as a stand-alone system, while when used as an initialization for Statistical Deformable Models we obtain landmark localization results that largely outperform the current state-of-the-art on the challenging 300W benchmark. We thoroughly evaluate our method on a host of facial analysis tasks, and demonstrate its use for other correspondence estimation tasks, such as the human body and the human ear. DenseReg code is made available at http://alpguler.com/DenseReg.html along with supplementary materials

Synthesizing VERDICT maps from standard DWI data using GANs

VERDICT maps have shown promising results in clinical settings discriminating normal from malignant tissue and identifying specific Gleason grades non-invasively. However, the quantitative estimation of VERDICT maps requires a specific diffusion-weighed imaging (DWI) acquisition. In this study we investigate the feasibility of synthesizing VERDICT maps from standard DWI data from multi-parametric (mp)-MRI by employing conditional generative adversarial networks (GANs). We use data from 67 patients who underwent both standard DWI-MRI and VERDICT MRI and rely on correlation analysis and mean squared error to quantitatively evaluate the quality of the synthetic VERDICT maps. Quantitative results show that the mean values of tumour areas in the synthetic and the real VERDICT maps were strongly correlated while qualitative results indicate that our method can generate realistic VERDICT maps that could supplement mp-MRI assessment for better diagnosis