A Circular Economy Strategy Selection Approach: Component-based Strategy Assignment using the Example of Electric Motors

The sustainability of industrial processes and products is a core issue of our time. There are several approaches to move from a linear, inherently wasteful economic principle to a circular economy focused on conserving products, resources, and energy. However, selecting which of the circular economy strategies ranging from reuse, repurpose, and remanufacture to recycling is crucial to ensure the economic viability of the product. This contribution proposes an iterative, component-based circular economy strategy selection method that supports product and production planners in choosing the appropriate circular economy strategy. For this approach, the suitability of each component for circular economy strategies is assessed based on identified key properties. In case of no fitting strategy, further component decomposition is devised, and the process is repeated. To further support the design of circular economy strategies, a modular process build set is suggested, enabling the swift composition of the processing sequence. The approach is then applied to the example of an electric motor of a battery electric vehicle. The presented approach allows a quick first assessment of the viability of different circular economy strategies and helps product and production engineers develop product-specific circular economy strategies

A Circular Economy Strategy Selection Approach: Component-based Strategy Assignment using the Example of Electric Motors

The sustainability of industrial processes and products is a core issue of our time. There are several approaches to move from a linear, inherently wasteful economic principle to a circular economy focused on conserving products, resources, and energy. However, selecting which of the circular economy strategies ranging from reuse, repurpose, and remanufacture to recycling is crucial to ensure the economic viability of the product. This contribution proposes an iterative, component-based circular economy strategy selection method that supports product and production planners in choosing the appropriate circular economy strategy. For this approach, the suitability of each component for circular economy strategies is assessed based on identified key properties. In case of no fitting strategy, further component decomposition is devised, and the process is repeated. To further support the design of circular economy strategies, a modular process build set is suggested, enabling the swift composition of the processing sequence. The approach is then applied to the example of an electric motor of a battery electric vehicle. The presented approach allows a quick first assessment of the viability of different circular economy strategies and helps product and production engineers develop product-specific circular economy strategies

Directed evolution of G protein-coupled receptors in yeast for higher functional production in eukaryotic expression hosts

Despite recent successes, many G protein-coupled receptors (GPCRs) remained refractory to detailed molecular studies due to insufficient production yields, even in the most sophisticated eukaryotic expression systems. Here we introduce a robust method employing directed evolution of GPCRs in yeast that allows fast and efficient generation of receptor variants which show strongly increased functional production levels in eukaryotic expression hosts. Shown by evolving three different receptors in this study, the method is widely applicable, even for GPCRs which are very difficult to express. The evolved variants showed up to a 26-fold increase of functional production in insect cells compared to the wild-type receptors. Next to the increased production, the obtained variants exhibited improved biophysical properties, while functional properties remained largely unaffected. Thus, the presented method broadens the portfolio of GPCRs accessible for detailed investigations. Interestingly, the functional production of GPCRs in yeast can be further increased by induced host adaptation

A Vaccinia-based system for directed evolution of GPCRs in mammalian cells

Directed evolution in bacterial or yeast display systems has been successfully used to improve stability and expression of G protein-coupled receptors for structural and biophysical studies. Yet, several receptors cannot be tackled in microbial systems due to their complex molecular composition or unfavorable ligand properties. Here, we report an approach to evolve G protein-coupled receptors in mammalian cells. To achieve clonality and uniform expression, we develop a viral transduction system based on Vaccinia virus. By rational design of synthetic DNA libraries, we first evolve neurotensin receptor 1 for high stability and expression. Second, we demonstrate that receptors with complex molecular architectures and large ligands, such as the parathyroid hormone 1 receptor, can be readily evolved. Importantly, functional receptor properties can now be evolved in the presence of the mammalian signaling environment, resulting in receptor variants exhibiting increased allosteric coupling between the ligand binding site and the G protein interface. Our approach thus provides insights into the intricate molecular interplay required for GPCR activation

Phage capsid nanoparticles with defined ligand arrangement block influenza virus entry

Multivalent interactions at biological interfaces occur frequently in nature and mediate recognition and interactions in essential physiological processes such as cell-to-cell adhesion. Multivalency is also a key principle that allows tight binding between pathogens and host cells during the initial stages of infection. One promising approach to prevent infection is the design of synthetic or semisynthetic multivalent binders that interfere with pathogen adhesion1,2,3,4. Here, we present a multivalent binder that is based on a spatially defined arrangement of ligands for the viral spike protein haemagglutinin of the influenza A virus. Complementary experimental and theoretical approaches demonstrate that bacteriophage capsids, which carry host cell haemagglutinin ligands in an arrangement matching the geometry of binding sites of the spike protein, can bind to viruses in a defined multivalent mode. These capsids cover the entire virus envelope, thus preventing its binding to the host cell as visualized by cryo-electron tomography. As a consequence, virus infection can be inhibited in vitro, ex vivo and in vivo. Such highly functionalized capsids present an alternative to strategies that target virus entry by spike-inhibiting antibodies5 and peptides6 or that address late steps of the viral replication cycle

A generic selection system for improved expression and thermostability of G protein-coupled receptors by directed evolution

Structural and biophysical studies as well as drug screening approaches on G protein-coupled receptors (GPCRs) have been largely hampered by the poor biophysical properties and low expression yields of this largest class of integral membrane proteins. Thermostabilisation of GPCRs by introduction of stabilising mutations has been a key factor to overcome these limitations. However, labelled ligands with sufficient affinity, which are required for selective binding to the correctly folded receptor, are often not available. Here we describe a novel procedure to improve receptor expression and stability in a generic way, independent of specific ligands, by means of directed evolution in E. coli. We have engineered a homogenous fluorescent reporter assay that only detects receptors which are correctly integrated into the inner cell membrane and, thus, discriminates functional from non-functional receptor species. When we combined this method with a directed evolution procedure we obtained highly expressing mutants of the neurotensin receptor 1 with greatly improved thermostability. By this procedure receptors with poor expression and/or low stability, for which no ligands or only ones with poor binding properties are available, can now be generated in quantities allowing detailed structural and biophysical analysis

Posttranslational modification of phosducin with the small ubiquitin-related modifier 'SUMO'

Die Rezeptor vermittelte Aktivierung heterotrimerer G-Proteine ist einer der bedeutendsten Signaltransduktionsmechanismen in vielen Organismen. Die Vielzahl unterschiedlicher Rezeptoren und Agonisten macht eine effektive Kontrolle des einzelnen Signals unumgänglich. Das zytosolische Protein Phosducin bindet beta-gamma-Untereinheiten aktivierter G-Proteine und hemmt damit sowohl Gbeta-gamma-vermittelte Effekte als auch Galpha-vermittelte Effekte. In der vorliegenden Arbeit wurde neben der bekannten 33 kDa Form von Phosducin eine weitere 47 kDa große Form in der Retina und im Herz identifiziert. Hierbei handelte es sich um Phosducin, welches mit dem small ubiquitin-related modifier, SUMO, modifiziert war. Weiterhin wurde sowohl in vitro als auch in zellulären Sytemen gezeigt, dass Phosducin mit einem Molekül SUMO an Lysin 33 modifiziert wird. Durch punktgerichtete Mutation dieser Modifikationsstelle wurde eine SUMOylierungs-defiziente Phosducin-Mutante generiert. Diese Mutante unterliegt einem gesteigerten Turnover im Vergleich zu Wildtyp-Phosducin, welcher auf die verstärke Ubiquitinierung und dem damit verbundenen proteasomalen Abbau der Mutante zurückzuführen war. Dies demonstriert, dass SUMOylierung von Phosducin protektive Wirkung auf dieses Protein hat. Darüberhinaus behindert die SUMOylierung von Phosducin dessen Bindung an Gbeta-gamma-Untereinheiten heterotrimerer G-Proteine. Diese Beobachtungen erlauben den Schluss, dass SUMOylierung neben der Phosphorylierung ein neuer und wichtiger Mechanismus ist, über den die Verfügbarkeit von Phosducin als G-Protein-Regulator kontrolliert wird.Receptor-mediated activation of heterotrimeric G-proteins is one of the most important signalling mechanisms in many organisms. The variety of different receptors and ligands require a tight control of the individual signalling processes. The cytosolic protein Phosducin has been show to tightly bind to Gbeta-gamma subunits of heterotrimeric G-proteins thereby attenuating Gbeta-gamma and G-alpha mediated signals. In the present study a previously unknown 47 kDa high molecular isoform of 33 kDa protein phosducin was identified in the retina and the heart. This isoform was shown to be phosducin modified with the small ubiquitin-related modifier SUMO. Further experiments in vitro and in cells revealed that phosducin is modified with SUMO at lysine 33. Mutation of lysine 33 abolished SUMOylation of phosducin. Compared to wild-type phosducin the SUMOylation-deficient mutant of phosducin revealed reduced steady state protein levels and increased ubiquitination. This suggests that SUMOylation is protecting phosducin from ubiquitination and subsequent proteasomal degradation. Moreover, SUMOylation of phosducin decreased its ability to bind to Gbeta-gamma subunits of heterotrimeric G-proteins. Together, these findings show that phosducin is a previously unrecognized target of SUMO modification, and that SUMOylation controls phosducin stability in cells as well as its functional properties

Effects of parathyroid hormone on the structure and complexation of parathyroid hormone receptor 1

Der Parathormonrezeptor Typ 1 (PTHR) ist ein G-Protein-gekoppelter Rezeptor der Gruppe 2 und wichtigster Regulator des Kalziumstoffwechsels. Im ersten Teil der Arbeit wurde eine neuartige posttranslationale Modifikation des PTHR in Form einer proteolytischen Spaltung der Ektodomäne identifiziert, charakterisiert und deren Regulation beschrieben. Nach langanhaltender Stimulation des Rezeptors mit Agonisten – aber nicht mit Antagonisten – wurde eine Massen- und Mengenzunahme des Rezeptorproteins beobachtet. Es konnte gezeigt werden, dass der Rezeptor unter basalen Bedingungen einer Spaltung unterliegt. Der Massenunterschied entsteht durch die proteolytische Spaltung der Ektodomäne des PTHR, was nachfolgend die Stabilität des Rezeptors beeinträchtigt. Die Spaltung erfolgte innerhalb einer unstrukturierten Schleife der Ektodomäne, welche die Bereiche für die Ligandenbindung miteinander verbindet. Hierbei handelt es sich um eine Region, die im Vergleich zu anderen Gruppe 2-Rezeptoren spezifisch für den PTHR ist. Das durch die Spaltung entstandene N-terminale Fragment bleibt durch eine Disulfidbrücke mit dem Transmembranteil des Rezeptors verbunden. Durch Versuche mit verschiedenen Proteaseinhibitoren konnte die verantwortliche Protease der Familie der zinkabhängigen extrazellulären Proteasen zugeordnet werden. Diese Ergebnisse beschreiben einen Mechanismus wie die Homoöstase des PTHR reguliert sein könnte. In einem zweiten Abschnitt wurde die Interaktion der Adapterproteine NHERF1 und beta-Arrestin2 mit dem PTHR untersucht. Beide Proteine interagierten unabhängig mit dem Rezeptor, wobei NHERF1 über eine PDZ-Domäne konstitutiv an den C-Terminus des Rezeptors bindet. beta-Arrestin2 hingegen bindet nach Aktivierung des Rezeptors und führt zur Desensitisierung des Rezeptors. Mittels biochemischer und mikroskopischer Methoden konnte gezeigt werden, dass beide Proteine gemeinsam einen ternären Komplex mit dem PTHR bilden, welcher durch die direkte Interaktion zwischen NHERF1 und beta-Arrestin2 vermittelt wird. Dies hat zur Folge, dass beta-Arrestin im basalen Zustand durch NHERF1 an den Rezeptor gekoppelt wird. Durch Analyse der Assoziationskinetik mittels Fluoreszenz-Resonanz-Energietransfer-Messungen zeigte sich, dass diese Kopplung zu einer zweifach erhöhten Rekrutierungsgeschwindigkeit von beta-Arrestin2 an den PTHR führt. Somit stellt unterstützt NHERF1 die beta-Arrestin2-vermittelte Desensitisierung des PTHR.The Parathyroid hormone receptor type 1 (PTHR) belongs to the class 2 of G-protein coupled receptors (GPCRs) and is the main regulator of calcium homeostasis of the body. The first part of the dissertation describes a novel mechanism of receptor regulation based on a proteolytic cleavage of the receptor’s extracellular domain. Prolonged stimulation with PTH led to an apparent increase in molecular mass and in stability of the PTHR. Biochemical analysis of the receptor protein revealed that the PTHR undergoes posttranslational cleavage. Agonistic but not antagonistic PTH-peptides prevented this cleavage, thereby stabilizing the molecular mass and also increasing the half life of the receptor. The cleavage was shown to occur within an unstructured stretch of the extracellular domain of the receptor, which connects two parts required for ligand binding and which is unique in the PTHR amongst all class 2 GPCRs. The cleaved N-terminal fragment was further connected by a disulfide bridge and could only be released by reducing agents. By testing a panel of different protease inhibitors, a protease belonging to the family of zinc-dependent metalloproteases could be identified to be responsible for the PTHR cleavage. Thus, these findings describe a new mechanism how PTHR homeostasis may be regulated. In the second part, the interaction between the adaptor proteins NHERF1 and beta-arrestin2 with the PTHR was assessed. Both proteins interacted independently with the receptor. While NHERF1 formed a constitutive interaction with the PTHR C-terminus, beta-arrestin2-binding required activation of the receptor. Using biochemical and microscopic methods it was shown that both proteins formed a ternary complex with the receptor. This complex was mediated by a direct interaction between NHERF1 and beta-arrestin2 which has been identified in this work. As a consequence, NHERF1 leads to a coupling of beta-arrestin2 close to the PTHR. Association kinetics of beta-arrestin2 with the PTHR measured by fluorescent resonance energy transfer were two-fold increased in the presence of NHERF, suggesting that the ternary complex facilitates the desensitization of the PTHR by beta-arrestin2

Engineering of Challenging G Protein-Coupled Receptors for Structure Determination and Biophysical Studies

Membrane proteins such as G protein-coupled receptors (GPCRs) exert fundamental biological functions and are involved in a multitude of physiological responses, making these receptors ideal drug targets. Drug discovery programs targeting GPCRs have been greatly facilitated by the emergence of high-resolution structures and the resulting opportunities to identify new chemical entities through structure-based drug design. To enable the determination of high-resolution structures of GPCRs, most receptors have to be engineered to overcome intrinsic hurdles such as their poor stability and low expression levels. In recent years, multiple engineering approaches have been developed to specifically address the technical difficulties of working with GPCRs, which are now beginning to make more challenging receptors accessible to detailed studies. Importantly, successfully engineered GPCRs are not only valuable in X-ray crystallography, but further enable biophysical studies with nuclear magnetic resonance spectroscopy, surface plasmon resonance, native mass spectrometry, and fluorescence anisotropy measurements, all of which are important for the detailed mechanistic understanding, which is the prerequisite for successful drug design. Here, we summarize engineering strategies based on directed evolution to reduce workload and enable biophysical experiments of particularly challenging GPCRs

New views into class B GPCRs from the crystal structure of PTH1R

The parathyroid hormone 1 receptor (PTH1R) is a major regulator of mineral ion homeostasis and bone metabolism and is thus considered an attractive drug target for the treatment of disorders in calcium metabolism and bone-related diseases such as osteoporosis. PTH1R is a member of the class B of GPCRs, which all share a dynamic multidomain binding mechanism to the peptide hormone. For a long time, these complexes have been recalcitrant to structural studies despite their great therapeutic relevance. Through extensive engineering of both the receptor and the peptide agonist ligand, we were able to determine the first high-resolution structure of a PTH1R-agonist complex. Comparisons of the PTH1R crystal structure with subsequently reported cryo-electron microscopy structures of the same receptor in complex with a G protein, as well as with other class B GPCR structures bound to antagonists, reveal new insights into the two-step activation mechanism of class B GPCRs and extend our understanding of the precise molecular rearrangements during receptor activation