17 research outputs found

    Fig_S1

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    Supplementary file 5 Figure S1 accompanying the publication Population transcriptomics in Daphnia: the role of thermal selection, Maike Herrmann, Suda Parimala Ravindran, Klaus Schwenk and Mathilde Cordellier. Sample to sample distances heat map created with DESeq2, based on read counts after regularized-logarithm transformation. Each row/column corresponds to a single biological replicate

    SI_2

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    Supplementary file 2 Tables S9-S11 accompanying the publication Population transcriptomics in Daphnia: the role of thermal selection, Maike Herrmann, Suda Parimala Ravindran, Klaus Schwenk and Mathilde Cordellier. For the Table of Contents please refer to the README file

    Thielsch et al. MER Discrimination of hybrid classes in Daphnia

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    Zipped archive contains text files including genotyping data, locality information, infiles for NewHybrids, Structure, Genetix, and Micro-Checker (xls) as well as an information file about the data packag

    SI_3

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    Supplementary file 3 Tables S12-S19 accompanying the publication Population transcriptomics in Daphnia: the role of thermal selection, Maike Herrmann, Suda Parimala Ravindran, Klaus Schwenk and Mathilde Cordellier. For the Table of Contents please refer to the README file

    Multilocus genotype data of Daphnia longispina complex

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    This file contains the microsatellite data from the publication formatted as input file for the program Genetix, which was used to calculate a factorial correspondence analysis that is presented in the publication

    Structure results K=1-10_complete dataset

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    This file contains the results of the Structure analysis presented in the publication using the whole dataset. The zipfile includes the Evanno table as well as the indfiles for K1-10 that were obtained from Structure Harvester

    Structure parameter file_subset longispina

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    This file summarizes the Structure parameters that were used to obtain the results of the taxon D. longispina (including individuals belonging to mitochondrial clade II and III) presented in the publication

    Structure parameter file_complete dataset

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    This file summarizes the Structure parameters that were used to obtain the results for the whole dataset presented in the publication

    Structure date file_subset longispina

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    This is an input file for the clustering software Structure that contains multilocus genotype data of Daphnia longispina (N = 103), Daphnia divergent mitochondrial clade II (N = 8), and Daphnia divergent mitochondrial clade III (N = 9). Information on the microsatellite loci as well as the populations are available in the publication or in the additional file associated to this publication
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