265 research outputs found
Fermions and noncommutative emergent gravity II: Curved branes in extra dimensions
We study fermions coupled to Yang-Mills matrix models from the point of view
of emergent gravity. The matrix model Dirac operator provides an appropriate
coupling for fermions to the effective gravitational metric for general branes
with nontrivial embedding, albeit with a non-standard spin connection. This
generalizes previous results for 4-dimensional matrix models. Integrating out
the fermions in a nontrivial geometrical background induces indeed the
Einstein-Hilbert action of the effective metric, as well as additional terms
which couple the Poisson tensor to the Riemann tensor, and a dilaton-like term.Comment: 34 pages; minor change
Energy-gap dynamics of superconducting NbN thin films studied by time-resolved terahertz spectroscopy
Using time-domain Terahertz spectroscopy we performed direct studies of the
photoinduced suppression and recovery of the superconducting gap in a
conventional BCS superconductor NbN. Both processes are found to be strongly
temperature and excitation density dependent. The analysis of the data with the
established phenomenological Rothwarf-Taylor model enabled us to determine the
bare quasiparticle recombination rate, the Cooper pair-breaking rate and the
electron-phonon coupling constant, \lambda = 1.1 +/- 0.1, which is in excellent
agreement with theoretical estimates.Comment: 4 pages, 4 figures; final version, accepted for publication in Phys.
Rev. Let
Keeping it cool: Soil sample cold pack storage and DNA shipment up to 1 month does not impact metabarcoding results
A grant from the One-University Open Access Fund at the University of Kansas was used to defray the author's publication fees in this Open Access journal. The Open Access Fund, administered by librarians from the KU, KU Law, and KUMC libraries, is made possible by contributions from the offices of KU Provost, KU Vice Chancellor for Research & Graduate Studies, and KUMC Vice Chancellor for Research. For more information about the Open Access Fund, please see http://library.kumc.edu/authors-fund.xml.With the advances of sequencing tools, the fields of environmental microbiology and soil ecology have been transformed. Today, the unculturable majority of soil microbes can be sequenced. Although these tools give us tremendous power and open many doors to answer important questions, we must understand how sample processing may impact our results and interpretations. Here, we test the impacts of four soil storage methods on downstream amplicon metabarcoding and qPCR analyses for fungi and bacteria. We further investigate the impact of thaw time on extracted DNA to determine a safe length of time during which this can occur with minimal impact on study results. Overall, we find that storage using standard cold packs with subsequent storage at ā20Ā°C is little different than immediate storage in liquid nitrogen, suggesting that the historical and current method is adequate. We further find evidence that storage at room temperature or with aid of RNAlater can lead to changes in community composition and in the case of RNAlater, lower gene copies. We therefore advise against these storage methods for metabarcoding analyses. Finally, we show that over 1 month, DNA extract thaw time does not impact diversity or qPCR metrics. We hope that this work will help researchers working with soil bacteria and fungi make informed decisions about soil storage and transport to ensure repeatability and accuracy of results and interpretations.National Science Foundation (DEB- 1738041, OIA 1656006)National Geographic Society (WW-036ER-17
Matrix Models, Emergent Gravity, and Gauge Theory
Matrix models of Yang-Mills type induce an effective gravity theory on
4-dimensional branes, which are considered as models for dynamical space-time.
We review recent progress in the understanding of this emergent gravity. The
metric is not fundamental but arises effectively in the semi-classical limit,
along with nonabelian gauge fields. This leads to a mechanism for protecting
certain geometries from corrections due to the vacuum energy.Comment: 8 pages. Based on invited talks given at the Conferences "Quantum
Spacetime and Noncommutative Geometry", Rome, 2008 and at "Workshop on
quantum gravity and nocommutative geometry", Lisbon, 2008 and at "Emergent
Gravity", Boston, 2008 and at DICE2008, Italy, 2008 and at "QG2 2008 Quantum
Geometry and Quantum Gravity", Nottingham, 200
Curvature and Gravity Actions for Matrix Models
We show how gravitational actions, in particular the Einstein-Hilbert action,
can be obtained from additional terms in Yang-Mills matrix models. This is
consistent with recent results on induced gravitational actions in these matrix
models, realizing space-time as 4-dimensional brane solutions. It opens up the
possibility for a controlled non-perturbative description of gravity through
simple matrix models, with interesting perspectives for the problem of vacuum
energy. The relation with UV/IR mixing and non-commutative gauge theory is
discussed.Comment: 17 pages; v2+v3: minor correction
Emergent Gravity, Matrix Models and UV/IR Mixing
We verify explicitly that UV/IR mixing for noncommutative gauge theory can be
understood in terms of an induced gravity action, as predicted by the
identification [1] of gravity within matrix models of NC gauge theory. More
precisely, we obtain the Einstein-Hilbert action by integrating out a scalar
field in the adjoint. It arises from the well-known UV/IR mixing of NC gauge
theory, which is carefully re-analyzed and interpreted in terms of gravity. The
matrix model therefore contains gravity as an IR effect, due to UV/IR mixing.Comment: 33 pages, 3 figures. V2: references adde
Schwarzschild Geometry Emerging from Matrix Models
We demonstrate how various geometries can emerge from Yang-Mills type matrix
models with branes, and consider the examples of Schwarzschild and
Reissner-Nordstroem geometry. We provide an explicit embedding of these branes
in R^{2,5} and R^{4,6}, as well as an appropriate Poisson resp. symplectic
structure which determines the non-commutativity of space-time. The embedding
is asymptotically flat with asymptotically constant \theta^{\mu\nu} for large
r, and therefore suitable for a generalization to many-body configurations.
This is an illustration of our previous work arXiv:1003.4132, where we have
shown how the Einstein-Hilbert action can be realized within such matrix
models.Comment: 21 pages, 1 figur
Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification
Motivation: Tandem mass spectrometry (MS/MS) is an indispensable technology for identification of proteins from complex mixtures. Proteins are digested to peptides that are then identified by their fragmentation patterns in the mass spectrometer. Thus, at its core, MS/MS protein identification relies on the relative predictability of peptide fragmentation. Unfortunately, peptide fragmentation is complex and not fully understood, and what is understood is not always exploited by peptide identification algorithms
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