Representing Sheared Convective Boundary Layer by Zeroth- and First-Order-Jump

Dry convective boundary layers characterized by a significant wind shear on the surface and at the inversion are studied by means of the mixed-layer theory. Two different representations of the entrainment zone, each of which has a different closure of the entrainment heat flux, are considered. The simpler of the two is based on a sharp discontinuity at the inversion (zeroth-order jump), whereas the second one prescribes a finite depth of the inversion zone (first-order jump). Large-eddy simulation data are used to provide the initial conditions for the mixed-layer models, and to verify their results. Two different atmospheric boundary layers with different stratification in the free atmosphere are analyzed. It is shown that, despite the simplicity of the zeroth-order-jump model, it provides similar results to the first-order-jump model and can reproduce the evolution of the mixed-layer variables obtained by the large-eddy simulations in sheared convective boundary layers. The mixed-layer model with both closures compares better with the large-eddy simulation results in the atmospheric boundary layer characterized by a moderate wind shear and a weak temperature inversion. These results can be used to represent the flux of momentum, heat, and other scalars at the entrainment zone in general circulation or chemistry transport models.Peer Reviewe

Parameterization of entrainment in a sheared convective boundary layer using a first-order jump model

Basic entrainment equations applicable to the sheared convective boundary layer (CBL) are derived by assuming an inversion layer with a finite depth, i.e., the first-order jump model. Large-eddy simulation data are used to determine the constants involved in the parameterizations of the entrainment equations. Based on the integrated turbulent kinetic energy budget from surface to the top of the CBL, the resulting entrainment heat flux normalized by surface heat flux is a function of the inversion layer depth, the velocity jumps across the inversion layer, the friction velocity, and the convection velocity. The developed first-order jump model is tested against large-eddy simulation data of two independent cases with different inversion strengths. In both cases, the model reproduces quite reasonably the evolution of the CBL height, virtual potential temperature, and velocity components in the mixed layer and in the inversion layer.Peer Reviewe

Chromatin and transcriptional signatures for Nodal signaling during endoderm formation in hESCs

AbstractThe first stages of embryonic differentiation are driven by signaling pathways hardwired to induce particular fates. Endoderm commitment is controlled by the TGF-β superfamily member, Nodal, which utilizes the transcription factors, SMAD2/3, SMAD4 and FOXH1, to drive target gene expression. While the role of Nodal is well defined within the context of endoderm commitment, mechanistically it is unknown how this signal interacts with chromatin on a genome wide scale to trigger downstream responses. To elucidate the Nodal transcriptional network that governs endoderm formation, we used ChIP-seq to identify genomic targets for SMAD2/3, SMAD3, SMAD4, FOXH1 and the active and repressive chromatin marks, H3K4me3 and H3K27me3, in human embryonic stem cells (hESCs) and derived endoderm. We demonstrate that while SMAD2/3, SMAD4 and FOXH1 associate with DNA in a highly dynamic fashion, there is an optimal bivalent signature at 32 gene loci for driving endoderm commitment. Initially, this signature is marked by both H3K4me3 and H3K27me3 as a very broad bivalent domain in hESCs. Within the first 24h, SMAD2/3 accumulation coincides with H3K27me3 reduction so that these loci become monovalent marked by H3K4me3. JMJD3, a histone demethylase, is simultaneously recruited to these promoters, suggesting a conservation of mechanism at multiple promoters genome-wide. The correlation between SMAD2/3 binding, monovalent formation and transcriptional activation suggests a mechanism by which SMAD proteins coordinate with chromatin at critical promoters to drive endoderm specification

Vertebrate development requires ARVCF and p120 catenins and their interplay with RhoA and Rac

Using an animal model system and depletion-rescue strategies, we have addressed the requirement and functions of armadillo repeat gene deleted in velo-cardio-facial syndrome (ARVCF) and p120 catenins in early vertebrate embryogenesis. We find that xARVCF and Xp120 are essential to development given that depletion of either results in disrupted gastrulation and axial elongation, which are specific phenotypes based on self-rescue analysis and further criteria. Exogenous xARVCF or Xp120 cross-rescued depletion of the other, and each depletion was additionally rescued with (carefully titrated) dominant-negative RhoA or dominant-active Rac. Although xARVCF or Xp120 depletion did not appear to reduce the adhesive function of C-cadherin in standard cell reaggregation and additional assays, C-cadherin levels were somewhat reduced after xARVCF or Xp120 depletion, and rescue analysis using partial or full-length C-cadherin constructs suggested contributory effects on altered adhesion and signaling functions. This work indicates the required functions of both p120 and ARVCF in vertebrate embryogenesis and their shared functional interplay with RhoA, Rac, and cadherin in a developmental context

Cytomegalovirus Ventriculoencephalitis after Unrelated Double Cord Blood Stem Cell Transplantation with an Alemtuzumab-containing Preparative Regimen for Philadelphia-positive Acute Lymphoblastic Leukemia

Despite the prophylaxis and preemptive strategies using potent antiviral agents, cytomegalovirus (CMV) remains a major infectious cause of morbidity and mortality in allogeneic stem cell transplantation (SCT) recipients. Delayed immune reconstitution after SCT, such as cord blood and T-cell depleted SCT with the use of alemtuzumab, has been associated with an increased frequency of CMV disease as well as CMV reactivation. CMV disease involving central nervous system is an unusual presentation in the setting of SCT. We report a case of CMV ventriculoencephalitis after unrelated double cord blood SCT with an alemtuzumab-containing preparative regimen for Philadelphia-positive acute lymphoblastic leukemia

Catecholamines May Play an Important Role in the Pathogenesis of Transient Mid- and Basal Ventricular Ballooning Syndrome

The exact pathogenesis of transient mid- and basal ventricular ballooning, a new variant of transient left ventricular (LV) ballooning, remains unknown. We report two cases of transient mid- and basal ventricular ballooning associated with catecholamines. These cases suggest that catecholamine-mediated myocardial dysfunction might be a potential mechanism of this syndrome

A Successful Primary Percutaneous Coronary Intervention Twelve Days After a Cabrol Composite Graft Operation in Marfan Syndrome

The Cabrol procedure is one of several techniques used for re-implantation of a coronary artery. After replacement of the ascending aorta and aortic valve using a composite graft, second Dacron tube grafts are used for anastomosis between the ascending aortic graft and the coronary arteries. Ostial stenosis is one of the complications associated with the Cabrol operation. However, there have been no reported cases of acute thrombosis of a Cabrol graft. Here we report a case with acute ST elevation myocardial infarction due to thrombotic total occlusion of a right Cabrol graft-to-right coronary artery (RCA) twelve days after surgery in a patient with Marfan syndrome. He was successfully treated with primary percutaneous coronary intervention (PCI)