Long term ordering kinetics of the two dimensional q-state Potts model

We studied the non-equilibrium dynamics of the q-state Potts model in the square lattice, after a quench to sub-critical temperatures. By means of a continuous time Monte Carlo algorithm (non-conserved order parameter dynamics) we analyzed the long term behavior of the energy and relaxation time for a wide range of quench temperatures and system sizes. For q>4 we found the existence of different dynamical regimes, according to quench temperature range. At low (but finite) temperatures and very long times the Lifshitz-Allen-Cahn domain growth behavior is interrupted with finite probability when the system stuck in highly symmetric non-equilibrium metastable states, which induce activation in the domain growth, in agreement with early predictions of Lifshitz [JETP 42, 1354 (1962)]. Moreover, if the temperature is very low, the system always gets stuck at short times in a highly disordered metastable states with finite life time, which have been recently identified as glassy states. The finite size scaling properties of the different relaxation times involved, as well as their temperature dependency are analyzed in detail.Comment: 10 pages, 17 figure

Economic analysis of fertilizer options for maize production in Tanzania

United States Agency for International Developmen

Constructing patch-based ligand-binding pocket database for predicting function of proteins

Background Many of solved tertiary structures of unknown functions do not have global sequence and structural similarities to proteins of known function. Often functional clues of unknown proteins can be obtained by predicting small ligand molecules that bind to the proteins. Methods In our previous work, we have developed an alignment free local surface-based pocket comparison method, named Patch-Surfer, which predicts ligand molecules that are likely to bind to a protein of interest. Given a query pocket in a protein, Patch-Surfer searches a database of known pockets and finds similar ones to the query. Here, we have extended the database of ligand binding pockets for Patch-Surfer to cover diverse types of binding ligands. Results and conclusion We selected 9393 representative pockets with 2707 different ligand types from the Protein Data Bank. We tested Patch-Surfer on the extended pocket database to predict binding ligand of 75 non-homologous proteins that bind one of seven different ligands. Patch-Surfer achieved the average enrichment factor at 0.1 percent of over 20.0. The results did not depend on the sequence similarity of the query protein to proteins in the database, indicating that Patch-Surfer can identify correct pockets even in the absence of known homologous structures in the database

Landscape natural resources management using forage grasses and legume intercrops

United States Agency for International Developmen

On the low-temperature lattice thermal transport in nanowires

We propose a theory of low temperature thermal transport in nano-wires in the regime where a competition between phonon and flexural modes governs the relaxation processes. Starting with the standard kinetic equations for two different types of quasiparticles we derive a general expression for the coefficient of thermal conductivity. The underlying physics of thermal conductance is completely determined by the corresponding relaxation times, which can be calculated directly for any dispersion of quasiparticles depending on the size of a system. We show that if the considered relaxation mechanism is dominant, then at small wire diameters the temperature dependence of thermal conductivity experiences a crossover from $T^{1/2}$ to $T^3$-dependence. Quantitative analysis shows reasonable agreement with resent experimental results.Comment: 12 pages, 3 eps figure

Three-dimensional antiferromagnetic q-state Potts models: application of the Wang-Landau algorithm

We apply a newly proposed Monte Carlo method, the Wang-Landau algorithm, to the study of the three-dimensional antiferromagnetic q-state Potts models on a simple cubic lattice. We systematically study the phase transition of the models with q=3, 4, 5 and 6. We obtain the finite-temperature phase transition for q= 3 and 4, whereas the transition temperature is down to zero for q=5. For q=6 there exists no order for all the temperatures. We also study the ground-state properties. The size-dependence of the ground-state entropy is investigated. We find that the ground-state entropy is larger than the contribution from the typical configurations of the broken-sublattice-symmetry state for q=3. The same situations are found for q = 4, 5 and 6.Comment: 9 pages including 9 eps figures, RevTeX, to appear in J. Phys.

Non-existence of stationary two-black-hole configurations

We resume former discussions of the question, whether the spin-spin repulsion and the gravitational attraction of two aligned black holes can balance each other. To answer the question we formulate a boundary value problem for two separate (Killing-) horizons and apply the inverse (scattering) method to solve it. Making use of results of Manko, Ruiz and Sanabria-G\'omez and a novel black hole criterion, we prove the non-existence of the equilibrium situation in question.Comment: 15 pages, 3 figures; Contribution to Juergen Ehlers Memorial Issue (GeRG journal

Study of the Potts Model on the Honeycomb and Triangular Lattices: Low-Temperature Series and Partition Function Zeros

We present and analyze low-temperature series and complex-temperature partition function zeros for the $q$-state Potts model with $q=4$ on the honeycomb lattice and $q=3,4$ on the triangular lattice. A discussion is given as to how the locations of the singularities obtained from the series analysis correlate with the complex-temperature phase boundary. Extending our earlier work, we include a similar discussion for the Potts model with $q=3$ on the honeycomb lattice and with $q=3,4$ on the kagom\'e lattice.Comment: 33 pages, Latex, 9 encapsulated postscript figures, J. Phys. A, in pres