Comment on ``Solidification of a Supercooled Liquid in a Narrow Channel''

Comment on PRL v. 86, p. 5084 (2001) [cond-mat/0101016]. We point out that the authors' simulations are consistent with the known theory of steady-state solutions in this system

Taylor dispersion of gyrotactic swimming micro-organisms in a linear flow

The theory of generalized Taylor dispersion for suspensions of Brownian particles is developed to study the dispersion of gyrotactic swimming micro-organisms in a linear shear flow. Such creatures are bottom-heavy and experience a gravitational torque which acts to right them when they are tipped away from the vertical. They also suffer a net viscous torque in the presence of a local vorticity field. The orientation of the cells is intrinsically random but the balance of the two torques results in a bias toward a preferred swimming direction. The micro-organisms are sufficiently large that Brownian motion is negligible but their random swimming across streamlines results in a mean velocity together with diffusion. As an example, we consider the case of vertical shear flow and calculate the diffusion coefficients for a suspension of the alga <i>Chlamydomonas nivalis</i>. This rational derivation is compared with earlier approximations for the diffusivity

Quantum network of neutral atom clocks

We propose a protocol for creating a fully entangled GHZ-type state of neutral atoms in spatially separated optical atomic clocks. In our scheme, local operations make use of the strong dipole-dipole interaction between Rydberg excitations, which give rise to fast and reliable quantum operations involving all atoms in the ensemble. The necessary entanglement between distant ensembles is mediated by single-photon quantum channels and collectively enhanced light-matter couplings. These techniques can be used to create the recently proposed quantum clock network based on neutral atom optical clocks. We specifically analyze a possible realization of this scheme using neutral Yb ensembles.Comment: 13 pages, 11 figure

Solution of an infection model near threshold

We study the Susceptible-Infected-Recovered model of epidemics in the vicinity of the threshold infectivity. We derive the distribution of total outbreak size in the limit of large population size $N$. This is accomplished by mapping the problem to the first passage time of a random walker subject to a drift that increases linearly with time. We recover the scaling results of Ben-Naim and Krapivsky that the effective maximal size of the outbreak scales as $N^{2/3}$, with the average scaling as $N^{1/3}$, with an explicit form for the scaling function

Microscopic Selection of Fluid Fingering Pattern

We study the issue of the selection of viscous fingering patterns in the limit of small surface tension. Through detailed simulations of anisotropic fingering, we demonstrate conclusively that no selection independent of the small-scale cutoff (macroscopic selection) occurs in this system. Rather, the small-scale cutoff completely controls the pattern, even on short time scales, in accord with the theory of microscopic solvability. We demonstrate that ordered patterns are dynamically selected only for not too small surface tensions. For extremely small surface tensions, the system exhibits chaotic behavior and no regular pattern is realized.Comment: 6 pages, 5 figure

Water in Emission in the ISO Spectrum of the Early M Supergiant Star mu Cephei

We report a detection of water in emission in the spectrum of the M2 supergiant atar mu Cep (M2Ia) observed by the Short Wavelength Spectrometer (SWS) aboard Infrared Space Observatory (ISO) and now released as the ISO Archives. The emission first appears in the 6 micron region (nu2 fundamental) and then in the 40 micron region (pure rotation lines) despite the rather strong dust emission. The intensity ratios of the emission features are far from those of the optically thin gaseous emission. Instead, we could reproduce the major observed emission features by an optically thick water sphere of the inner radius about two stellar radii (1300Rsun), Tex = 1500K, and Ncol (H2O) = 3.0E+20/cm2. This model also accounts for the H2O absorption bands in the near infrared (1.4, 1.9, and 2.7 micron) as well. The detection of water in emission provides strong constraints on the nature of water in the early M supergiant stars, and especially its origin in the outer atmosphere is confirmed against other models such as the large convective cell model. We finally confirm that the early M supergiant star is surrounded by a huge optically thick sphere of the warm water vapor, which may be referred to as MOLsphere for simplicity. Thus, the outer atmosphere of M supergiant stars should have a complicated hierarchical and/or hybrid structure with at least three major constituents including the warm MOLsphere (T about 1.0E+3K) together with the previously known hot chromosphere (T about 1.0E+4K) and cool expanding gas-dust envelope (T about 1.0E+2K).Comment: 14 pages, 5 postscript figures, to appear in ApJ

Effects of high-energy ionizing particles on the Si:As mid-infrared detector array on board the AKARI satellite

We evaluate the effects of high-energy ionizing particles on the Si:As impurity band conduction (IBC) mid-infrared detector on board AKARI, the Japanese infrared astronomical satellite. IBC-type detectors are known to be little influenced by ionizing radiation. However we find that the detector is significantly affected by in-orbit ionizing radiation even after spikes induced by ionizing particles are removed. The effects are described as changes mostly in the offset of detector output, but not in the gain. We conclude that the changes in the offset are caused mainly by increase in dark current. We establish a method to correct these ionizing radiation effects. The method is essential to improve the quality and to increase the sky coverage of the AKARI mid-infrared all-sky-survey map.Comment: 16 pages, 8 figures, 1 table, accepted for publication in PAS

Detection of Far-Infrared Water Vapor, Hydroxyl, and Carbon Monoxide Emissions from the Supernova Remnant 3C 391

We report the detection of shock-excited far-infrared emission of H2O, OH, and CO from the supernova remnant 3C 391, using the ISO Long-Wavelength Spectrometer. This is the first detection of thermal H2O and OH emission from a supernova remnant. For two other remnants, W~28 and W~44, CO emission was detected but OH was only detected in absorption. The observed H2O and OH emission lines arise from levels within ~400 K of the ground state, consistent with collisional excitation in warm, dense gas created after the passage of the shock front through the dense clumps in the pre-shock cloud. The post-shock gas we observe has a density ~2x10^5 cm^{-3} and temperature 100-1000 K, and the relative abundances of CO:OH:H2O in the emitting region are 100:1:7 for a temperature of 200 K. The presence of a significant column of warm H2O suggests that the chemistry has been significantly changed by the shock. The existence of significant column densities of both OH and H2O, which is at odds with models for non-dissociative shocks into dense gas, could be due to photodissociation of H2O or a mix of fast and slow shocks through regions with different pre-shock density.Comment: AASTeX manuscript and 4 postscript figure

Simulation and analysis of in vitro DNA evolution

We study theoretically the in vitro evolution of a DNA sequence by binding to a transcription factor. Using a simple model of protein-DNA binding and available binding constants for the Mnt protein, we perform large-scale, realistic simulations of evolution starting from a single DNA sequence. We identify different parameter regimes characterized by distinct evolutionary behaviors. For each regime we find analytical estimates which agree well with simulation results. For small population sizes, the DNA evolutional path is a random walk on a smooth landscape. While for large population sizes, the evolution dynamics can be well described by a mean-field theory. We also study how the details of the DNA-protein interaction affect the evolution.Comment: 11 pages, 11 figures. Submitted to PNA