104 research outputs found
Adaptive changes in the neuronal proteome: mitochondrial energy production, endoplasmic reticulum stress, and ribosomal dysfunction in the cellular response to metabolic stress
Impaired energy metabolism in neurons is integral to a range of neurodegenerative diseases, from Alzheimer’s disease to stroke. To investigate the complex molecular changes underpinning cellular adaptation to metabolic stress, we have defined the proteomic response of the SH-SY5Y human neuroblastoma cell line after exposure to a metabolic challenge of oxygen glucose deprivation (OGD) in vitro. A total of 958 proteins across multiple subcellular compartments were detected and quantified by label-free liquid chromatography mass spectrometry. The levels of 130 proteins were significantly increased (P<0.01) after OGD and the levels of 63 proteins were significantly decreased (P<0.01) while expression of the majority of proteins (765) was not altered. Network analysis identified novel protein–protein interactomes involved with mitochondrial energy production, protein folding, and protein degradation, indicative of coherent and integrated proteomic responses to the metabolic challenge. Approximately one third (61) of the differentially expressed proteins was associated with the endoplasmic reticulum and mitochondria. Electron microscopic analysis of these subcellular structures showed morphologic changes consistent with the identified proteomic alterations. Our investigation of the global cellular response to a metabolic challenge clearly shows the considerable adaptive capacity of the proteome to a slowly evolving metabolic challenge
Recommendations for chemical weed control in grain sorghum
12/77/15MHarold Kerr, Joseph H. Scott, O. Hale Fletchall and L. E. Anderson (Department of Agronomy, College of Agriculture
Dependence of direct detection signals on the WIMP velocity distribution
The signals expected in WIMP direct detection experiments depend on the
ultra-local dark matter distribution. Observations probe the local density,
circular speed and escape speed, while simulations find velocity distributions
that deviate significantly from the standard Maxwellian distribution. We
calculate the energy, time and direction dependence of the event rate for a
range of velocity distributions motivated by recent observations and
simulations, and also investigate the uncertainty in the determination of WIMP
parameters. The dominant uncertainties are the systematic error in the local
circular speed and whether or not the MW has a high density dark disc. In both
cases there are substantial changes in the mean differential event rate and the
annual modulation signal, and hence exclusion limits and determinations of the
WIMP mass. The uncertainty in the shape of the halo velocity distribution is
less important, however it leads to a 5% systematic error in the WIMP mass. The
detailed direction dependence of the event rate is sensitive to the velocity
distribution. However the numbers of events required to detect anisotropy and
confirm the median recoil direction do not change substantially.Comment: 21 pages, 7 figures, v2 version to appear in JCAP, minor change
A novel determination of the local dark matter density
We present a novel study on the problem of constructing mass models for the
Milky Way, concentrating on features regarding the dark matter halo component.
We have considered a variegated sample of dynamical observables for the Galaxy,
including several results which have appeared recently, and studied a 7- or
8-dimensional parameter space - defining the Galaxy model - by implementing a
Bayesian approach to the parameter estimation based on a Markov Chain Monte
Carlo method. The main result of this analysis is a novel determination of the
local dark matter halo density which, assuming spherical symmetry and either an
Einasto or an NFW density profile is found to be around 0.39 GeV cm with
a 1- error bar of about 7%; more precisely we find a for the Einasto profile and for the NFW. This is in contrast to the
standard assumption that is about 0.3 GeV cm with an
uncertainty of a factor of 2 to 3. A very precise determination of the local
halo density is very important for interpreting direct dark matter detection
experiments. Indeed the results we produced, together with the recent accurate
determination of the local circular velocity, should be very useful to
considerably narrow astrophysical uncertainties on direct dark matter
detection.Comment: 31 pages,11 figures; minor changes in the text; two figures adde
A conceptual framework for the emerging discipline of conservation physiology
Current rates of biodiversity decline are unprecedented and largely attributed to anthropogenic influences. Given the scope and magnitude of conservation issues, policy and management interventions must maximize efficiency and efficacy. The relatively new field of conservation physiology reveals the physiological mechanisms associated with population declines, animal- environment relationships and population or species tolerance thresholds, particularly where these relate to anthropogenic factors that necessitate conservation action. We propose a framework that demonstrates an integrative approach between physiology, conservation and policy, where each can inform the design, conduct and implementation of the other. Each junction of the conservation physiology process has the capacity to foster dialogue that contributes to effective implementation, monitoring, assessment and evaluation. This approach enables effective evaluation and implementation of evidence-based conservation policy and management decisions through a process of ongoing refinement, but may require that scientists (from the disciplines of both physiology and conservation) and policy-makers bridge interdisciplinary knowledge gaps. Here, we outline a conceptual framework that can guide and lead developments in conservation physiology, as well as promote innovative research that fosters conservation-motivated policy
Motion of influential players can support cooperation in Prisoner's Dilemma
We study a spatial Prisoner's dilemma game with two types (A and B) of
players located on a square lattice. Players following either cooperator or
defector strategies play Prisoner's Dilemma games with their 24 nearest
neighbors. The players are allowed to adopt one of their neighbor's strategy
with a probability dependent on the payoff difference and type of the given
neighbor. Players A and B have different efficiency in the transfer of their
own strategy therefore the strategy adoption probability is reduced by a
multiplicative factor (w < 1) from the players of type B. We report that the
motion of the influential payers (type A) can improve remarkably the
maintenance of cooperation even for their low densities.Comment: 7 pages, 7 figure
New Insights into White-Light Flare Emission from Radiative-Hydrodynamic Modeling of a Chromospheric Condensation
(abridged) The heating mechanism at high densities during M dwarf flares is
poorly understood. Spectra of M dwarf flares in the optical and
near-ultraviolet wavelength regimes have revealed three continuum components
during the impulsive phase: 1) an energetically dominant blackbody component
with a color temperature of T 10,000 K in the blue-optical, 2) a smaller
amount of Balmer continuum emission in the near-ultraviolet at lambda 3646
Angstroms and 3) an apparent pseudo-continuum of blended high-order Balmer
lines. These properties are not reproduced by models that employ a typical
"solar-type" flare heating level in nonthermal electrons, and therefore our
understanding of these spectra is limited to a phenomenological interpretation.
We present a new 1D radiative-hydrodynamic model of an M dwarf flare from
precipitating nonthermal electrons with a large energy flux of erg
cm s. The simulation produces bright continuum emission from a
dense, hot chromospheric condensation. For the first time, the observed color
temperature and Balmer jump ratio are produced self-consistently in a
radiative-hydrodynamic flare model. We find that a T 10,000 K
blackbody-like continuum component and a small Balmer jump ratio result from
optically thick Balmer and Paschen recombination radiation, and thus the
properties of the flux spectrum are caused by blue light escaping over a larger
physical depth range compared to red and near-ultraviolet light. To model the
near-ultraviolet pseudo-continuum previously attributed to overlapping Balmer
lines, we include the extra Balmer continuum opacity from Landau-Zener
transitions that result from merged, high order energy levels of hydrogen in a
dense, partially ionized atmosphere. This reveals a new diagnostic of ambient
charge density in the densest regions of the atmosphere that are heated during
dMe and solar flares.Comment: 50 pages, 2 tables, 13 figures. Accepted for publication in the Solar
Physics Topical Issue, "Solar and Stellar Flares". Version 2 (June 22, 2015):
updated to include comments by Guest Editor. The final publication is
available at Springer via http://dx.doi.org/10.1007/s11207-015-0708-
Analytical Results for Individual and Group Selection of Any Intensity
The idea of evolutionary game theory is to relate the payoff of a game to reproductive success (= fitness). An underlying assumption in most models is that fitness is a linear function of the payoff. For stochastic evolutionary dynamics in finite populations, this leads to analytical results in the limit of weak selection, where the game has a small effect on overall fitness. But this linear function makes the analysis of strong selection difficult. Here, we show that analytical results can be obtained for any intensity of selection, if fitness is defined as an exponential function of payoff. This approach also works for group selection (= multi-level selection). We discuss the difference between our approach and that of inclusive fitness theory
GWAS of QRS duration identifies new loci specific to Hispanic/Latino populations
Background The electrocardiographically quantified QRS duration measures ventricular depolarization and conduction. QRS prolongation has been associated with poor heart failure prognosis and cardiovascular mortality, including sudden death. While previous genome-wide association studies (GWAS) have identified 32 QRS SNPs across 26 loci among European, African, and Asian-descent populations, the genetics of QRS among Hispanics/Latinos has not been previously explored. Methods We performed a GWAS of QRS duration among Hispanic/Latino ancestry populations (n = 15,124) from four studies using 1000 Genomes imputed genotype data (adjusted for age, sex, global ancestry, clinical and study-specific covariates). Study-specific results were combined using fixed-effects, inverse variance-weighted meta-analysis. Results We identified six loci associated with QRS (P<5x10-8), including two novel loci: MYOCD, a nuclear protein expressed in the heart, and SYT1, an integral membrane protein. The top SNP in the MYOCD locus, intronic SNP rs16946539, was found in Hispanics/Latinos with a minor allele frequency (MAF) of 0.04, but is monomorphic in European and African descent populations. The most significant QRS duration association was with intronic SNP rs3922344 (P = 1.19x10-24) in SCN5A/SCN10A. Three other previously identified loci, CDKN1A, VTI1A, and HAND1, also exceeded the GWAS significance threshold among Hispanics/Latinos. A total of 27 of 32 previously identified QRS duration SNPs were shown to generalize in Hispanics/Latinos. Conclusions Our QRS duration GWAS, the first in Hispanic/Latino populations, identified two new loci, underscoring the utility of extending large scale genomic studies to currently under-examined populations
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