58 research outputs found
Se alquila 'alejamiento' turĂstico sobre cementerio indio
La noticia aparecĂa hace unos meses en losmedios: en el barrio de Poble Sec (Barcelona) estaban construyendo un edificio con seis apartamentos plurifamiliares de madera dirigidos a un mercado de turismo responsable. La promotora de estos apartamentos explicaba que se oponĂa al "turismo de borrachera" y a la "masificaciĂłn de los barrios" y que apostaba por otros valores como son la "ecologĂa" y lo "social". Todo un manifiesto[...] La notĂcia apareixia fa uns mesos en losmedios: al barri de Poble Sec (Barcelona) estaven construint un edifici amb sis apartaments plurifamiliars de fusta dirigits a un mercat de turisme responsable. La promotora d'aquests apartaments explicava que s'oposava al 'turisme de borratxera' i de la 'massificaciĂł dels barris' i que apostava per altres valors com sĂłn la 'ecologia' i el 'social'. Tot un manifest[...
Additional file 2: of Reference-guided de novo assembly approach improves genome reconstruction for related species
Table of evaluation statistics at low coverage. (XLSX 51ĂÂ kb
Additional file 1 of Positional bias in variant calls against draft reference assemblies
Supplementary figures. (PDF 1499 kb
Additional file 7 of Development of a prediction system for tail-anchored proteins
Table S4. Initial conditions for the MP model. (PDF 37 kb
MD simulations of Isdâ˘hemeâ˘Isd ternary complexes.
<p>(A and D) Overall structures of the docked complexes IsdH-N3, IsdA-N, IsdC-N, and heme are represented in cyan, yellow, orange, and purple, respectively. The IsdH-N3â˘hemeâ˘IsdA-N and IsdA-Nâ˘hemeâ˘IsdC-N snapshots were obtained in MD simulations at 1,000 and 900 ns, respectively. (B and E) Plots of distances in MD trajectories; black, green, red, and blue traces represent distances between side-chain OÎł atoms of conserved serine residues and proximal carboxyl groups of heme, between OΡ atoms of the primary tyrosine residues and iron, and between the secondary tyrosine and iron, respectively. (C and F) Plots of RMSD values; crystal structures were used as reference structures. Panel F: RMSD values that were calculated excluding the β7-β8 hairpin in IsdC-N (residues Asp-118 to Tyr-136) are presented in the blue trace.</p
MD simulations of Isdâ˘hemeâ˘Isd ternary complexes.
<p>(A and D) Overall structures of the docked complexes IsdH-N3, IsdA-N, IsdC-N, and heme are represented in cyan, yellow, orange, and purple, respectively. The IsdH-N3â˘hemeâ˘IsdA-N and IsdA-Nâ˘hemeâ˘IsdC-N snapshots were obtained in MD simulations at 1,000 and 900 ns, respectively. (B and E) Plots of distances in MD trajectories; black, green, red, and blue traces represent distances between side-chain OÎł atoms of conserved serine residues and proximal carboxyl groups of heme, between OΡ atoms of the primary tyrosine residues and iron, and between the secondary tyrosine and iron, respectively. (C and F) Plots of RMSD values; crystal structures were used as reference structures. Panel F: RMSD values that were calculated excluding the β7-β8 hairpin in IsdC-N (residues Asp-118 to Tyr-136) are presented in the blue trace.</p
Proposed heme transfer mechanism from IsdH-N3 to IsdC via IsdA.
<p>The sides of heme are shown in black and white. Heme is inverted upon formation of the complex between acceptor and donor NEAT domains.</p
Two-dimensional potential energy surface of the system of two phenols and an Fe(III)-porphine.
<p>Black contour lines are at intervals of 3 kcal/mol.</p
Optimization of structures using the ONIOM method.
<p>Residues of IsdH-N3, IsdA-N, and IsdC-N are shown in cyan, yellow, and orange, respectively. Heme is shown in purple. (<b>A</b>) IsdHâTyr642 and IsdAâTyr170 are deprotonated in the IsdH-N3â˘hemeâ˘IsdA-N complex and (<b>B</b>) IsdAâTyr166 and IsdCâTyr132 are deprotonated in the IsdA-Nâ˘hemeâ˘IsdC-N complex.</p
Additional file 9: of Silhouette Scores for Arbitrary Defined Groups in Gene Expression Data and Insights into Differential Expression Results
Examples of AS estimates for two- and three-group data. The procedures for analyzing Nakaiâs MAS-quantified data consisting of 31,099 probesets Ăâ24 samples are provided. Example 1 compares three-group data with four BRs, 4 BAT_fed samples vs. 4 WAT_fed samples vs. 4 LIV_fed samples, with ASâ=â0.460. Example 2 compares three-group data with two BRs, âBAT_fed1 and 2â vs. âWAT_fed1 and 2â vs. âLIV_fed1 and 2,â with ASâ=â0.438. Example 3 compares three-group data with two BRs, âBAT_fed1 and BAT_fas1â vs. âBAT_fed2 and BAT_fas2â vs. âBAT_fed3 and BAT_fas3,â with ASâ=âââ0.185. Example 4 compares two-group data with four BRs, 4 BAT_fed samples vs. 4 WAT_fed samples, with ASâ=â0.374. Example 5 compares two-group data with four BRs, 4 BAT_fed samples vs. 4 LIV_fed samples, with ASâ=â0.657. (R 3 kb
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