Simple Structural Differences between Coding and Noncoding DNA

Background The study of large-scale genome structure has revealed patterns suggesting the influence of evolutionary constraints on genome evolution. However, the results of these studies can be difficult to interpret due to the conceptual complexity of the analyses. This makes it difficult to understand how observed statistical patterns relate to the physical distribution of genomic elements. We use a simpler and more intuitive approach to evaluate patterns of genome structure. Methodology/Principal Findings We used randomization tests based on Morisita\u27s Index of aggregation to examine average differences in the distribution of purines and pyrimidines among coding and noncoding regions of 261 chromosomes from 223 microbial genomes representing 21 phylum level groups. Purines and pyrimidines were aggregated in the noncoding DNA of 86% of genomes, but were only aggregated in the coding regions of 52% of genomes. Coding and noncoding DNA differed in aggregation in 94% of genomes. Noncoding regions were more aggregated than coding regions in 91% of these genomes. Genome length appears to limit aggregation, but chromosome length does not. Chromosomes from the same species are similarly aggregated despite substantial differences in length. Aggregation differed among taxonomic groups, revealing support for a previously reported pattern relating genome structure to environmental conditions. Conclusions/Significance Our approach revealed several patterns of genome structure among different types of DNA, different chromosomes of the same genome, and among different taxonomic groups. Similarity in aggregation among chromosomes of varying length from the same genome suggests that individual chromosome structure has not evolved independently of the general constraints on genome structure as a whole. These patterns were detected using simple and readily interpretable methods commonly used in other areas of biology

Morphology and reactivity of size-selected titanium oxide nanoclusters on Au(111).

The morphology and reactivity of mass-selected titania clusters, Ti3O6 and Ti3O5, deposited onto Au(111) were studied by scanning tunneling microscopy and temperature programmed desorption. Despite differing by only one oxygen atom, the stoichiometric Ti3O6 and the sub-stoichiometric ("reduced") Ti3O5 clusters exhibit very different structures and preferred binding sites. The Ti3O6 clusters bind at step edges and form small assemblies (2-4 clusters) on Au terraces, while the "reduced" Ti3O5 clusters form much larger fractal-like assemblies that can extend across step boundaries. Annealing the Ti3O5,6/Au(111) systems to higher temperatures causes changes in the size-distributions of cluster assemblies, but does not lead to the formation of TiOx nanoislands for temperatures ≤700 K. Reactivity studies show that the reduced Ti3O5 cluster has higher activity than Ti3O6 for 2-propanol dehydration, although both clusters exhibit substantial activity for dehydrogenation to acetone. Calculations using DFT+U suggest that the differences in aggregate morphology and reactivity are associated with the number of undercoordinated Ti3c sites in the supported clusters

Exploring How One’s Primary Financial Conversant Varies by Marital Status

Research has shown communication around finances is essential to relational satisfaction, yet often couples avoid these money talks. In this study, we examined how the financial discussions were impacted by marital status. The findings were surprising. Married people were the least likely to be engaging in money talks with their partner, all of the other participants (e.g., cohabitating, dating, separated) were all engaging their partners at much greater rates in money talks. However, married respondents were talking to their family members, friends, financial professionals, and other professionals about money. These different conversations were analyzed through the lens of social capital to explore how different couple typologies may impact their tendencies to use bridging or bonding social capital. Finally, the results suggest that other aspects of human capital (e.g., health, education, age) also related to rates of financial conversations. The findings of this study have strong implications for financial professionals, financial therapists, mental health professionals, as well as, implications for anyone in a romantic relationship

Determination of Photochemically Produced Carbon Dioxide in Seawater

An analytical system was developed to determine photochemically produced carbon dioxide in marine waters. Our system was designed to measure low levels of carbon dioxide by maintaining a closed system to prevent atmospheric contamination during sample preparation, irradiation, and analysis. To detect low levels of photoproduced carbon dioxide in seawater, background dissolved inorganic carbon (DIC) was removed before irradiation. To strip out DIC, samples were acidified to pH 3.0 (converting DIC to carbon dioxide) and bubbled with low carbon dioxide air. The pH was then readjusted back to the original value, and the resulting low-DIC seawater samples were transferred pneumatically to air-tight quartz tubes for irradiation. During analysis, samples were pneumatically transferred to a sample loop, injected, and acidified. Carbon dioxide was then stripped out, dried, and carried to a nondispersive infrared carbon dioxide analyzer. Calibration was done with a series of low concentration aqueous carbonate standards (0.05 to 3 μmol L-1). The detection limit, defined as the concentration corresponding to three times the standard deviation of the experimental blank (i.e., DIC-stripped seawater), was similar to ~60 nmol L-1. Method precision was largely dependent on the agreement between multiple injections from the same tube (\u3c ± 2% relative standard deviation [RSD]) and the reproducibility between different tubes (±3% RSD). This method was used to measure carbon dioxide photoproduction in a variety of waters (e.g., estuarine, lake) including the first direct measurements in marine waters

Hypophosphatemic rickets: Revealing Novel Control Points for Phosphate Homeostasis

Rapid and somewhat surprising advances have recently been made towards understanding the molecular mechanisms causing heritable disorders of hypophosphatemia. The results of clinical, genetic, and translational studies have interwoven novel concepts underlying the endocrine control of phosphate metabolism, with far-reaching implications for treatment of both rare, Mendelian diseases as well as common disorders of blood phosphate excess such as chronic kidney disease (CKD). In particular, diseases caused by changes in the expression and proteolytic control of the phosphaturic hormone Fibroblast growth factor-23 (FGF23) have come to the forefront in terms of directing new models explaining mineral metabolism. These hypophosphatemic disorders, as well as others resulting from independent defects in phosphate transport or metabolism, will be reviewed herein, and implications for emerging therapeutic strategies based upon these new findings will be discussed

Selection for Greater β-Glucan Content in Oat Grain

Oat (Avena sativa L.) β-glucan lowers serum cholesterol in humans. Development of oat cultivars with greater groat (caryopsis) β-glucan content would increase the nutritional and economic value of the crop. The objectives of this experiment were to evaluate the response to phenotypic selection among individual S0 plants for greater groat β-glucan content in two genetically broad-based populations; to compare selected experimental lines to standard check cultivars; and to estimate genetic variances and heritabilities and to test for nonadditive genetic variance for β-glucan content. We measured groat β-glucan contents of check cultivars and parental lines and random S0:1 lines from initial and selected generations of each population grown in field experiments in 1996 and 1997 at two Iowa locations. Mean β-glucan content increased from 53.9 to 59.9 g kg−1 in one population, and from 63.5 to 66.0 g kg−1 in the other, following selection. Genetic variance of β-glucan content decreased by 9 to 22% following selection, but heritability for β-glucan content did not change significantly. Heritability estimates ranged from 0.80 to 0.85 on a line mean basis. Additive variance was the only substantial component of genetic variance. Some experimental lines had significantly greater β-glucan content than the best check cultivars and lines. Phenotypic selection for greater groat β-glucan content will be effective for developing cultivars with elevated β-glucan contents