GMF: A Model Migration Case for the Transformation Tool Contest

Using a real-life evolution taken from the Graphical Modeling Framework, we invite submissions to explore ways in which model transformation and migration tools can be used to migrate models in response to metamodel adaptation.Comment: In Proceedings TTC 2011, arXiv:1111.440

The Potential for Using Little Diomede Island as a Platform for Observing Environmental Conditions in Bering Strait

The Pacific waters that enter the Arctic via the Bering Strait exert a major influence on the Arctic Ocean’s stratification, ice cover, and ecosystem. We demonstrate the potential of a shore-based laboratory to monitor the water masses that flow predominantly northward past Little Diomede Island in the center of the Bering Strait into the Arctic Ocean. We determined near-surface water column salinity, inorganic nutrient concentrations, natural fluorescence associated with chlorophyll, and the oxygen isotope composition of seawater, both in summer during the open-water period and in late winter under ice-covered conditions, by pumping ashore water from shallow depths near the island. Additional surveys were undertaken within 5 km of the island to assess the influence of local sources of nutrients. Water mass variability was much greater during the open-water period than under ice-covered conditions, presumably because the relatively immobile ice cover attenuates wind forcing and the decrease in run-off reduces cross-shelf gradients. The mean oxygen isotope composition of the summer (?18O = -1.11‰) and late winter (?18O = -0.98) collections, however, was close to that which has been established for Bering Sea waters in the Pacific-dominated upper halocline of the Arctic Ocean (-1.1‰) particularly considering the higher seasonal flow of runoff in the summer. A comparison with data from shipboard sampling at various locations across the Bering Strait indicates that the oxygen isotope composition of near-surface water sampled at Diomede varies in response to wind-forcing. If the least saline (< 30.5) water near the Alaska coast is excluded, the ?18O values of Diomede and shipboard samples cannot be distinguished statistically. This similarity suggests that the water sampled from the island also reasonably represents the ?18O value of Bering Sea waters that contribute to the upper halocline of the Arctic Ocean. Effects of benthic recycling, human activity, and seabird nesting on nutrient concentrations appeared to be concentrated within ~200 m of the island. Our results are discussed in the practical context of availability of electricity, interested local residents, and a geotechnical study indicating that it is feasible to construct and operate a more permanent undersea water intake system to improve environmental observation capabilities in the Bering Strait region.Les eaux du Pacifique qui entrent dans l’Arctique par le détroit de Béring ont une influence majeure sur la stratification, le couvert de glace et l’écosystème de l’océan Arctique. Dans ce rapport nous présentons des données qui démontrent le potentiel d’un laboratoire basé à terre dans le but de surveiller les masses d’eau qui circulent principalement vers le nord au-delà de l’île Little Diomede au centre du détroit de Béring jusqu’à l’océan Arctique. Nous avons déterminé la salinité de la colonne d’eau près de la surface, la concentration des nutriments inorganiques, la fluorescence naturelle associée avec la chlorophylle, ainsi que la composition en isotope d’oxygène de l’eau de mer. Ces données ont été recueillies pendant la période estivale en eaux ouvertes et à la fin de l’hiver sous des conditions de couvert de glace en pompant à terre l’eau provenant d’aires peu profondes près de l’île. Des études supplémentaires ont été entreprises à moins de 5 km de l’île afin d’évaluer l’influence des sources locales de nutriments. La variabilité des masses d’eaux était plus grande pendant la période sans couvert de glace que pendant les conditions de couvert de glace. Ceci était vraisemblablement dû à l’atténuation de la force exercée par le vent sous le couvert de glace relativement immobile et à une réduction des gradients à travers le plateau provenant d’une réduction du ruissellement. La composition moyenne en isotope d’oxygène des collections de l’été (?18O = -1.11‰) et de fin d’hiver (?18O = -0.98‰) étaient cependant près de celle qui a été établie pour les eaux de la mer de Béring dans l’halocline supérieure de l’océan Arctique dominée par les eaux du Pacifique (?18O = -1.1‰), particulièrement compte tenu du flux saisonnier de ruissellement plus élevé pendant l’été. Une comparaison avec des données recueillies par bateau à plusieurs locations à travers le détroit de Béring indique que la composition en isotope d’oxygène près de la surface des eaux mesurée à Diomede varie en réponse à la force du vent. Lorsque l’eau moins saline (< 30.5) près de la côte de l’Alaska est exclue, les valeurs ?18O de Diomede et des échantillons recueillis par bateau ne peuvent être distingués statistiquement. Cette similarité suggère que l’eau échantillonnée à partir de l’île représente aussi raisonnablement les valeurs ?18O des eaux de la mer de Béring qui contribuent à l’halocline supérieure de l’océan Arctique. Les conséquences du recyclage benthique, des activités anthropogéniques et de la nidification des oiseaux de mer sur les concentrations de nutriments semblent être concentrées à moins de ~200m de l’île. Nos résultats sont interprétés dans le contexte pratique de la disponibilité de l’électricité, de l’intérêt des résidents locaux et d’une étude géotechnique qui indique qu’un système permanent de prise d’eau sous-marin peut être construit et opéré afin d’améliorer les capacités d’observation environnementale dans la région du détroit de Béring

Influenza Vaccine Effectiveness against Hospitalisation with Confirmed Influenza in the 2010-11 Seasons: A Test-negative Observational Study

Immunisation programs are designed to reduce serious morbidity and mortality from influenza, but most evidence supporting the effectiveness of this intervention has focused on disease in the community or in primary care settings. We aimed to examine the effectiveness of influenza vaccination against hospitalisation with confirmed influenza. We compared influenza vaccination status in patients hospitalised with PCR-confirmed influenza with patients hospitalised with influenza-negative respiratory infections in an Australian sentinel surveillance system. Vaccine effectiveness was estimated from the odds ratio of vaccination in cases and controls. We performed both simple multivariate regression and a stratified analysis based on propensity score of vaccination. Vaccination status was ascertained in 333 of 598 patients with confirmed influenza and 785 of 1384 test-negative patients. Overall estimated crude vaccine effectiveness was 57% (41%, 68%). After adjusting for age, chronic comorbidities and pregnancy status, the estimated vaccine effectiveness was 37% (95% CI: 12%, 55%). In an analysis accounting for a propensity score for vaccination, the estimated vaccine effectiveness was 48.3% (95% CI: 30.0, 61.8%). Influenza vaccination was moderately protective against hospitalisation with influenza in the 2010 and 2011 seasons

Reduced Purkinje cell number in essential tremor : a postmortem study

Background: Clinical and functional imaging evidence suggests that cerebellar dysfunction occurs in essential tremor (ET). In recent postmortem studies, we documented increased numbers of torpedoes (Purkinje cell axonal swellings) in ET patients without Lewy bodies. Purkinje cell loss, however, has never been rigorously assessed. Objective: To quantitatively assess the number of Purkinje cells in brains of ET patients and similarly aged controls. Methods: Postmortem cerebellar tissue was available in 14 ET cases (6 with Lewy bodies and 8 without Lewy bodies) and 11 controls. Calbindin immunohistochemistry was performed on paraffin sections of the cerebellum. Images were digitally recorded and blinded measurements of the number of Purkinje cells per millimeter of cell layer (linear density) were made. Results: Purkinje cell linear density was inversely correlated with age (r=-0.53, P=.006) and number of torpedoes (r=-0.42, P=.04). Purkinje cell linear density differed by diagnosis (mean [SD], controls, 3.46 [1.27] cells/mm; ET cases with Lewy bodies, 3.33 [1.06] cells/mm; and ET cases without Lewy bodies, 2.14 [0.82] cells/mm; P=.04), with the most significant difference between ET cases without Lewy bodies and controls, where the reduction was 38.2% (P=.04). In an adjusted linear regression analysis that compared ET cases without Lewy bodies with controls, decreased linear density (outcome variable) was associated with ET (β=.56, P=.03). Conclusions: We demonstrated a reduction in Purkinje cell number in the brains of patients with ET who do not have Lewy bodies. These data further support the view that the cerebellum is anatomically, as well as functionally, abnormal in these ET cases

Endomicroscopic and transcriptomic analysis of impaired barrier function and malabsorption in environmental enteropathy

Introduction: Environmental enteropathy (EE) is associated with growth failure, micronutrient malabsorption and impaired responses to oral vaccines. We set out to define cellular mechanisms of impaired barrier function in EE and explore protective mechanisms. Methods: We studied 49 adults with environmental enteropathy in Lusaka, Zambia using confocal laser endomicroscopy (CLE); histology, immunohistochemistry and mRNA sequencing of small intestinal biopsies; and correlated these with plasma lipopolysaccharide (LPS) and a zinc uptake test. Results: CLE images (median 134 for each study) showed virtually ubiquitous small intestinal damage. Epithelial defects, imaged by histology and claudin 4 immunostaining, were predominantly seen at the tips of villi and corresponded with leakage imaged in vivo by CLE. In multivariate analysis, circulating log-transformed LPS was correlated with cell shedding events (β = 0.83; P = 0.035) and with serum glucagon-like peptide-2 (β = -0.13; P = 0.007). Zinc uptake from a test dose of 25mg was attenuated in 30/47 (64%) individuals and in multivariate analysis was reduced by HIV, but positively correlated with GLP-2 (β = 2.72; P = 0.03). There was a U-shaped relationship between circulating LPS and villus surface area. Transcriptomic analysis identified 23 differentially expressed genes in severe enteropathy, including protective peptides and proteins. Conclusions: Confocal endomicroscopy, claudin 4 immunostaining and histology identify epithelial defects which are probably sites of bacterial translocation, in the presence of which increased epithelial surface area increases the burden of translocation. GLP 2 and other protective peptides may play an important role in mucosal protection in EE

Torpedoes in Parkinson's disease, Alzheimer's disease, essential tremor, and control brains

Purkinje cell axonal swellings ("torpedoes"), described in several cerebellar disorders as well as essential tremor (ET), have not been quantified in common neurodegenerative conditions

Severe airway stenosis associated with Crohn's disease: Case report

BACKGROUND: Symptomatic respiratory tract involvement is not common in Crohn's disease. Upper-airway obstruction has been reported before in Crohn's disease and usually responds well to steroid treatment. CASE PRESENTATION: We report a case of a 32-year old patient with Crohn's disease who presented with progressively worsening dyspnea on exertion. Magnetic Resonance Imaging of the chest and bronchoscopy revealed severe tracheal stenosis and marked inflammation of tracheal mucosa. Histopathology of the lesion showed acute and chronic inflammation and extended ulceration of bronchial mucosa, without granulomas. Tracheal stenosis was attributed to Crohn's disease after exclusion of other possible causes and oral and inhaled steroids were administered. Despite steroid treatment, tracheal stenosis persisted and only mild symptomatic improvement was noted after 8 months of therapy. The patient subsequently underwent rigid bronchoscopy with successful dilatation and ablation of the stenosed areas and remission of her symptoms. CONCLUSION: Respiratory involvement in Crohn's disease might be more common than appreciated. Interventional pulmonology techniques should be considered in cases of tracheal stenosis due to Crohn's disease refractory to steroid treatment

Influenza epidemiology, vaccine coverage and vaccine effectiveness in sentinel Australian hospitals in 2013: the Influenza Complications Alert Network

The National Influenza Program aims to reduce serious morbidity and mortality from influenza by providing public funding for vaccination to at-risk groups. The Influenza Complications Alert Network (FluCAN) is a sentinel hospital-based surveillance program that operates at 14 sites in all states and territories in Australia. This report summarises the epidemiology of hospitalisations with confirmed influenza, estimates vaccine coverage and influenza vaccine protection against hospitalisation with influenza during the 2013 influenza season. In this observational study, cases were defined as patients admitted to one of the sentinel hospitals, with influenza confirmed by nucleic acid testing. Controls were patients who had acute respiratory illnesses who were test-negative for influenza. Vaccine effectiveness was estimated as 1 minus the odds ratio of vaccination in case patients compared with control patients, after adjusting for known confounders. During the period 5 April to 31 October 2013, 631 patients were admitted with confirmed influenza at the 14 FluCAN sentinel hospitals. Of these, 31% were more than 65 years of age, 9.5% were Indigenous Australians, 4.3% were pregnant and 77% had chronic co-morbidities. Influenza B was detected in 30% of patients. Vaccination coverage was estimated at 81% in patients more than 65 years of age but only 49% in patients aged less than 65 years with chronic comorbidities. Vaccination effectiveness against hospitalisation with influenza was estimated at 50% (95% confidence interval: 33%, 63%,

Weather and our food supply

The steep rate of increase in yield of grain crops in the United States since the mid-1950\u27s has resulted in the use of the term explosion in technology. Surplus grains piled up to such proportions after the 1960 · harvest that acreage control appeared. to be in order. But despite substantial reductions in acreages after 1960 the increased output per acre has just about compensated for acreage reductions. During this period of rapid increase in output per acre there has been a growing tendency to believe that technology has reduced the influence of weather on grain production so that we no longer need to fear shortages due to unfavorable weather. There is also a popular belief that acreage control$ fail to achieve the objective of production control, and that public funds are being wasted in storing surplus grains which we don\u27t need. There is increasing evidence, however, that a period of favorable weather interacted with technology to produce our recent high yields, and that perhaps half of the increase in yield per acre since 1950 has been due to a change to more favorable weather for grain crops. These findings have important implications in continued support for research in production technology and in the way in which we look at our surplus stocks of feed and food grains. If a period of favorable weather has been responsible for half of the increase in yields since 19501 then what can we expect if the weather trend reverses itself for a few years? Do we have periodicity in weather, and have we just passed through a run of favorable years that might be followed by a run of unfavorable years? Should we treat our surplus grains as reserves? How does our rate of growth in grain output compare with the needs of a growing world population? And of course I in the background of these questions is one big question -- how much of our recent high yields is really due to weather? To answer these important questions the Center for Agriculture and Economic Development invited outstanding authorities to present their ideas under three main headings: (1) Techniques for Evaluation of Weather Variables in Agricultural Production I (2) Periodicity in Weather Patterns: Implications in Agriculture I and (3) Weather Considerations in Agricultural Policy. The papers have been assembled in the order of their presentation under the general outline above.https://lib.dr.iastate.edu/card_reports/1021/thumbnail.jp

Intermediate and extreme mass-ratio inspirals — astrophysics, science applications and detection using LISA

Black hole binaries with extreme (gtrsim104:1) or intermediate (~102–104:1) mass ratios are among the most interesting gravitational wave sources that are expected to be detected by the proposed laser interferometer space antenna (LISA). These sources have the potential to tell us much about astrophysics, but are also of unique importance for testing aspects of the general theory of relativity in the strong field regime. Here we discuss these sources from the perspectives of astrophysics, data analysis and applications to testing general relativity, providing both a description of the current state of knowledge and an outline of some of the outstanding questions that still need to be addressed. This review grew out of discussions at a workshop in September 2006 hosted by the Albert Einstein Institute in Golm, Germany