Can bacteria adapt to starvation-free environment?

Bacteria will experience starvation-free environment if infinite nutrition is supplied continuously for a long period. In this study, an evolutionary experiment was performed for 118 days where bacteria adapted to starvation-free environment and reduced their doubling time. It is anticipated that this finding will help to select bacterial strains that can grow more rapidly in rich media

D∗D^{\ast} polarization vs. RD(∗)R_{D^{(\ast)}} anomalies in the leptoquark models

Polarization measurements in $\bar{B} \to D^{(\ast)} \tau \overline{\nu}$ are useful to check consistency in new physics explanations for the $R_{D}$ and $R_{D^{\ast}}$ anomalies. In this paper, we investigate the $D^{\ast}$ and $\tau$ polarizations and focus on the new physics contributions to the fraction of a longitudinal $D^{\ast}$ polarization ($F_{L}^{D^{\ast}}$), which is recently measured by the Belle collaboration $F_{L}^{D^{\ast}} = 0.60 \pm 0.09$, in model-independent manner and in each single leptoquark model (${\rm R}_2$, ${\rm S}_1$ and ${\rm U}_1$) that can naturally explain the $R_{D^{(\ast)}}$ anomalies. It is found that $\mathcal{B}(B_c^{+} \to \tau^{+} \nu)$ severely restricts deviation from the Standard Model (SM) prediction of $F_{L, \textrm{SM}}^{D^{\ast}} = 0.46 \pm 0.04$ in the leptoquark models: [0.43, 0.44], [0.42, 0.48], and [0.43, 0.47] are predicted as a range of $F_{L}^{D^{\ast}}$ for the ${\rm R}_2$, ${\rm S}_1$, and ${\rm U}_1$ leptoquark models, respectively, where the current data of $R_{D^{(\ast)}}$ is satisfied at $1\,\sigma$ level. It is also shown that the $\tau$ polarization observables can much deviate from the SM predictions. The Belle II experiment, therefore, can check such correlations between $R_{D^{(\ast)}}$ and the polarization observables, and discriminate among the leptoquark models.Comment: 24 pages, 3 figures, 1 table; references added, version published in JHE

Gluino-mediated electroweak penguin with flavor-violating trilinear couplings

In light of a discrepancy of the direct $CP$ violation in $K\to\pi\pi$ decays, $\varepsilon'/\varepsilon_K$, we investigate gluino contributions to the electroweak penguin, where flavor violations are induced by squark trilinear couplings. Top-Yukawa contributions to $\Delta S = 2$ observables are taken into account, and vacuum stability conditions are evaluated in detail. It is found that this scenario can explain the discrepancy of $\varepsilon'/\varepsilon_K$ for the squark mass smaller than 5.6 TeV. We also show that the gluino contributions can amplify $\mathcal{B}(K \to \pi \nu \overline{\nu})$, $\mathcal{B}(K_S \to \mu^+ \mu^-)_{\rm eff}$ and $\Delta A_{\rm CP}(b\to s\gamma)$. Such large effects could be measured in future experiments.Comment: 30 pages, 8 figures; references added, version published in JHE

Revisiting kaon physics in general Z scenario

New physics contributions to the Z penguin are revisited in the light of the recently-reported discrepancy of the direct CP violation in K→ππ. Interference effects between the standard model and new physics contributions to ΔS=2 observables are taken into account. Although the effects are overlooked in the literature, they make experimental bounds significantly severer. It is shown that the new physics contributions must be tuned to enhance B(KL→π0νν¯), if the discrepancy of the direct CP violation is explained with satisfying the experimental constraints. The branching ratio can be as large as 6×10−10 when the contributions are tuned at the 10% level

Revisiting kaon physics in general Z scenario

New physics contributions to the Z penguin are revisited in the light of the recently-reported discrepancy of the direct CP violation in K→ππ. Interference effects between the standard model and new physics contributions to ΔS=2 observables are taken into account. Although the effects are overlooked in the literature, they make experimental bounds significantly severer. It is shown that the new physics contributions must be tuned to enhance B(KL→π0νν¯), if the discrepancy of the direct CP violation is explained with satisfying the experimental constraints. The branching ratio can be as large as 6×10−10 when the contributions are tuned at the 10% level

Probing SUSY effects in KS0→μ+μ−K_S^0\rightarrow\mu^+\mu^-

We explore supersymmetric contributions to the decay $K_S^0\rightarrow\mu^+\mu^-$, in light of current experimental data. The Standard Model (SM) predicts $\mathcal{B}(K_S^0\rightarrow\mu^+\mu^-)\approx5\times 10^{-12}$. We find that contributions arising from flavour violating Higgs penguins can enhance the branching fraction up to $\approx 35\times 10^{-12}$ within different scenarios of the Minimal Supersymmetric Standard Model (MSSM), as well as suppress it down to $\approx 0.78\times 10^{-12}$. Regions with fine-tuned parameters can bring the branching fraction up to the current experimental upper bound, $8\times 10^{-10}$. The mass degeneracy of the heavy Higgs bosons in MSSM induces correlations between $\mathcal{B}(K_S^0\rightarrow\mu^+\mu^-)$ and $\mathcal{B}(K_L^0\rightarrow\mu^+\mu^-)$. Predictions for the $CP$ asymmetry in $K^0\rightarrow\mu^+\mu^-$ decays in the context of MSSM are also given, and can be up to eight times bigger than in the SM.Comment: 36 pages, 31 fig

Functional genetic selection of Helix 66 in Escherichia coli 23S rRNA identified the eukaryotic-binding sequence for ribosomal protein L2

Ribosomal protein L2 is a highly conserved primary 23S rRNA-binding protein. L2 specifically recognizes the internal bulge sequence in Helix 66 (H66) of 23S rRNA and is localized to the intersubunit space through formation of bridge B7b with 16S rRNA. The L2-binding site in H66 is highly conserved in prokaryotic ribosomes, whereas the corresponding site in eukaryotic ribosomes has evolved into distinct classes of sequences. We performed a systematic genetic selection of randomized rRNA sequences in Escherichia coli, and isolated 20 functional variants of the L2-binding site. The isolated variants consisted of eukaryotic sequences, in addition to prokaryotic sequences. These results suggest that L2/L8e does not recognize a specific base sequence of H66, but rather a characteristic architecture of H66. The growth phenotype of the isolated variants correlated well with their ability of subunit association. Upon continuous cultivation of a deleterious variant, we isolated two spontaneous mutations within domain IV of 23S rRNA that compensated for its weak subunit association, and alleviated its growth defect, implying that functional interactions between intersubunit bridges compensate ribosomal function

Colonization with extended-spectrum beta-lactamase-producing Escherichia coli and traveler's diarrhea attack rates among travelers to India: a systematic review and meta-analysis

Background India is an attractive destination for travelers. Unfortunately, numerous reports exist on traveler's diarrhea (TD) and fecal colonization with extended-spectrum beta-lactamase-producing Escherichia coli (ESBL-EC) among international travelers visiting India. Here, we systematically reviewed studies published on the acquisition of ESBL-EC and TD attack rates among international visitors to India. Methods Design: Systematic review and meta-analysis. A systematic search was performed using Google Scholar, PubMed, EMBASE, Web of Science, and gray literature from 2000 to December 2021, for studies containing data for ESBL-EC acquisition or TD experience related to a trip to India. Random effects models were used to compute the prevalence of ESBL-EC acquisition and TD attack. Results The literature search yielded a total of 5023 records. Of these, 31 met our inclusion criteria for systematic review and only 17 could be meta-analyzed (9 for TD, and 8 for ESBL-EC). The overall pooled attack rate of TD was 39% (95% confidence interval, CI: 25-53%). In studies where travelers' memory was used to diagnose TD, the pooled attack rate of TD was slightly higher (42%, 95% CI: 21-64%) compared to those where TD was objectively documented (33%, 95% CI: 17-49%). There were significant risks to be colonized with ESBL-EC among the travelers who experienced TD. The pooled rate of ESBL-EC colonization was 72% (CI: 67-78%). Most ESBL-EC produced CTX-M-15 enzyme. Furthermore, most of the travelers who acquired ESBL-EC were from highly industrialized countries recruited from travel clinics: Canada (n = 80), Germany (n = 69), Netherlands (n = 20), Sweden (n = 18), Japan (n = 10), Finland (n = 8), USA (n = 7), Spain (n = 5), and Denmark (n = 3). Conclusions TD pooled attack rate and ESBL-EC acquisition among international travelers visiting India were high in this study. However, we cannot make generalizations based upon this TD pooled attack rate for the current situation, due to a lack of current data. Our study highlights that travelers should be advised on TD to ensure that they do not disregard the risk of contracting TD and be better prepared as a result. It also illustrates the importance of international travel in acquiring antibiotic-resistant Escherichia coli

Long-Term Kinetics of Serological Antibodies against Vibrio cholerae Following a Clinical Cholera Case: A Systematic Review and Meta-Analysis

Background: Approximately 2.9 million people worldwide suffer from cholera each year, many of whom are destitute. However, understanding of immunity against cholera is still limited. Several studies have reported the duration of antibodies following cholera; however, systematic reviews including a quantitative synthesis are lacking. Objective: To meta-analyze cohort studies that have evaluated vibriocidal, cholera toxin B subunit (CTB), and lipopolysaccharide (LPS) antibody levels following a clinical cholera case. Methods: Design: Systematic review and meta-analysis. We searched PubMed and Web of science for studies assessing antibodies against Vibrio cholerae in cohorts of patients with clinical cholera. Two authors independently extracted data and assessed the quality of included studies. Random effects models were used to pool antibody titers in adults and older children (aged >= 6 years). In sensitivity analysis, studies reporting data on young children (2-5 years) were included. Results: Nine studies met our inclusion criteria for systematic review and seven for meta-analysis. The pooled mean of vibriocidal antibody titers in adults and older children (aged >= 6 years) was 123 on day 2 post-symptom onset, which sharply increased on day 7 (pooled mean = 6956) and gradually waned to 2247 on day 30, 578 on day 90, and 177 on day 360. Anti-CTB IgA antibodies also peaked on day 7 (pooled mean = 49), followed by a rapid decrease on day 30 (pooled mean = 21), and further declined on day 90 (pooled mean = 10), after which it plateaued from day 180 (pooled mean = 8) to 360 (pooled mean = 6). Similarly, anti-CTB IgG antibodies peaked in early convalescence between days 7 (pooled mean = 65) and 30 (pooled mean = 69), then gradually waned on days 90 (pooled mean = 42) and 180 (pooled mean = 30) and returned to baseline on day 360 (pooled mean = 24). Anti-LPS IgA antibodies peaked on day 7 (pooled mean = 124), gradually declined on day 30 (pooled mean = 44), which persisted until day 360 (pooled mean = 10). Anti LPS IgG antibodies peaked on day 7 (pooled mean = 94). Thereafter, they decreased on day 30 (pooled mean = 85), and dropped further on days 90 (pooled mean = 51) and 180 (pooled mean = 47), and returned to baseline on day 360 (pooled mean = 32). Sensitivity analysis including data from young children (aged 2-5 years) showed very similar findings as in the primary analysis. Conclusions: This study confirms that serological antibody (vibriocidal, CTB, and LPS) titers return to baseline levels within 1 year following clinical cholera, i.e., before the protective immunity against subsequent cholera wanes. However, this decay should not be interpreted as waning immunity because immunity conferred by cholera against subsequent disease lasts 3-10 years. Our study provides evidence for surveillance strategies and future research on vaccines and also demonstrates the need for further studies to improve our understanding of immunity against cholera

Cholera Outbreaks in India, 2011-2020: A Systematic Review

Fecal contamination of water sources and open defecation have been linked to cholera outbreaks in India. However, a systematic review on the drivers responsible for these outbreaks has yet to be published. Here, we systematically review the published literature on cholera outbreaks in India between 2011 and 2020. We searched studies in English in three databases (MEDLINE, EMBASE, and Web of Science) and the Integrated Disease Surveillance Program that tracks cholera outbreaks throughout India. Two authors independently extracted data and assessed the quality of the included studies. Quantitative data on the modes of transmission reviewed in this study were assessed for any change over time between 2011-2015 and 2016-2020. Our search retrieved 10823 records initially, out of which 81 full-text studies were assessed for eligibility. Among these 81 studies, 20 were eligible for inclusion in this review. There were 565 reported outbreaks between 2011 and 2020 that led to 45,759 cases and 263 deaths. Outbreaks occurred throughout the year; however, they exploded with monsoons (June through September). In Tamil Nadu, a typical peak of cholera outbreaks was observed from December to January. Seventy-two percent (33,089/45,759) of outbreak-related cases were reported in five states, namely Maharashtra, West Bengal, Punjab, Karnataka, and Madhya Pradesh. Analysis of these outbreaks highlighted the main drivers of cholera including contaminated drinking water and food, inadequate sanitation and hygiene (including open defecation), and direct contact between households. The comparison between 2011-2015 and 2016-2020 showed a decreasing trend in the outbreaks that arose due to damaged water pipelines. Many Indians still struggle with open defecation, sanitation, and clean water access. These issues should be addressed critically. In addition, it is essential to interrupt cholera short-cycle transmission (mediated by households, stored drinking water and foodstuffs) during an outbreak. As cholera is associated with deprivation, socio-economic development is the only long-term solution