High-energy particle transport in 3D hydrodynamic models of colliding-wind binaries

Massive stars in binary systems (as WR140, WR147 or $\eta$ Carinae) have long been regarded as potential sources of high-energy $\gamma$-rays. The emission is thought to arise in the region where the stellar winds collide and produce relativistic particles which subsequently might be able to emit $\gamma$-rays. Detailed numerical hydrodynamic simulations have already offered insight in the complex dynamics of the wind collision region (WCR), while independent analytical studies, albeit with simplified descriptions of the WCR, have shed light on the spectra of charged particles. In this paper, we describe a combination of these two approaches. We present a 3D-hydrodynamical model for colliding stellar winds and compute spectral energy distributions of relativistic particles for the resulting structure of the WCR. The hydrodynamic part of our model incorporates the line-driven acceleration of the winds, gravity, orbital motion and the radiative cooling of the shocked plasma. In our treatment of charged particles we consider diffusive shock acceleration in the WCR and the subsequent cooling via inverse Compton losses (including Klein-Nishina effects), bremsstrahlung, collisions and other energy loss mechanisms.Comment: 28 pages, 9 figures / accepted for publication in The Astrophysical Journa

MHD Simulation of the Inner-Heliospheric Magnetic Field

Maps of the radial magnetic field at a heliocentric distance of ten solar radii are used as boundary conditions in the MHD code CRONOS to simulate a 3D inner-heliospheric solar wind emanating from the rotating Sun out to 1 AU. The input data for the magnetic field are the result of solar surface flux transport modelling using observational data of sunspot groups coupled with a current sheet source surface model. Amongst several advancements, this allows for higher angular resolution than that of comparable observational data from synoptic magnetograms. The required initial conditions for the other MHD quantities are obtained following an empirical approach using an inverse relation between flux tube expansion and radial solar wind speed. The computations are performed for representative solar minimum and maximum conditions, and the corresponding state of the solar wind up to the Earths orbit is obtained. After a successful comparison of the latter with observational data, they can be used to drive outer-heliospheric models.Comment: for associated wmv movie files accompanying Figure 7, see http://www.tp4.rub.de/~tow/max.wmv and http://www.tp4.rub.de/~tow/min.wm

Polyclonal Aptamers for Specific Fluorescence Labeling and Quantification of the Health Relevant Human Gut Bacterium Parabacteroides distasonis

Single-stranded DNA aptamers as affinity molecules for the rapid, reliable detection of intestinal bacteria are of particular interest to equip health systems with novel robust and cheap diagnostic tools for monitoring the success of supplementation strategies with selected probiotic gut bacteria in the fight against major widespread threats, such as obesity and neurodegenerative diseases. The human gut bacterium Parabacteroides distasonis (P. distasonis) is positively associated with diseases such as obesity, non-alcoholic fatty liver disease and multiple sclerosis with reduced cell counts in these diseases and is thus a promising potential probiotic bacterium for future microbial supplementation. In this paper we report on the evolution of a specific polyclonal aptamer library by the fluorescence based FluCell-SELEX directed against whole cells of P. distasonis that specifically and efficiently binds and labels P. distasonis. The aptamer library showed high binding affinity and was suited to quantitatively discriminate P. distasonis from other prominent gut bacteria also in mixtures. We believe that this library against a promising probiotic bacterium as a prototype may open new routes towards the development of novel biosensors for the easy and efficient quantitative monitoring of microbial abundance in human microbiomes in general

Supressão de plantas daninhas por leguminosas anuais em sistema agroecológico na Pré-Amazônia.

Este trabalho teve por objetivos identificar e avaliar a agressividade potencial das plantas daninhas em um agrossistema com leguminosas herbáceas anuais como cobertura de solo. Foram plantadas, nas ruas de um sistema de aléias de sombreiro ( Clitoria fairchildiana) e no final do período agrícola, as leguminosas mucuna-preta, feijão-guandu, feijão-de-porco e calopogônio, em sistema de blocos ao acaso com cinco repetições. Para estudo da dinâmica da composição florística, avaliaram-se a freqüência, densidade, dominância, similaridade, diversidade de espécies e biomassa das plantas daninhas. Foram identificadas 42 espécies de plantas espontâneas, das quais as mais freqüentes e de maior densidade e dominância foram Leptochoa virgata, Panicumlaxum e Sidasp. Não foram detectadas diferenças significativas para densidade, número de espécies, diversidade e biomassa entre as plantas daninhas emergidas nos quatro tratamentos com leguminosas; nem destas em relação ao controle

Polyclonal Aptamer Libraries from a FluRoot-SELEX for the Specific Labeling of the Apical and Elongation/Differentiation Zones of Arabidopsis thaliana Roots

In more than 30 years of aptamer research, it has become widely accepted that aptamers are fascinating binding molecules for a vast variety of applications. However, the majority of targets have been proteins, although special variants of the so-called SELEX process for the molecular evolution of specific aptamers have also been developed, allowing for the targeting of small molecules as well as larger structures such as cells and even cellular networks of human (tumor) tissues. Although the provocative thesis is widely accepted in the field, that is, in principle, any level of complexity for SELEX targets is possible, the number of studies on whole organs or at least parts of them is limited. To pioneer this thesis, and based on our FluCell-SELEX process, here, we have developed polyclonal aptamer libraries against apices and the elongation/differentiation zones of plant roots as examples of organs. We show that dedicated libraries can specifically label the respective parts of the root, allowing us to distinguish them in fluorescence microscopy. We consider this achievement to be an initial but important evidence for the robustness of this SELEX variant. These libraries may be valuable tools for plant research and a promising starting point for the isolation of more specific individual aptamers directed against root-specific epitopes

A Polyclonal SELEX Aptamer Library Allows Differentiation of Candida albicans, C. auris and C. parapsilosis Cells from Human Dermal Fibroblasts

Easy and reliable identification of pathogenic species such as yeasts, emerging as problematic microbes originating from the genus Candida, is a task in the management and treatment of infections, especially in hospitals and other healthcare environments. Aptamers are seizing an already indispensable role in different sensing applications as binding entities with almost arbitrarily tunable specificities and optimizable affinities. Here, we describe a polyclonal SELEX library that not only can specifically recognize and fluorescently label Candida cells, but is also capable to differentiate C. albicans, C. auris and C. parapsilosis cells in flow-cytometry, fluorometric microtiter plate assays and fluorescence microscopy from human cells, exemplified here by human dermal fibroblasts. This offers the opportunity to develop diagnostic tools based on this library. Moreover, these specific and robust affinity molecules could also serve in the future as potent binding entities on biomaterials and as constituents of technical devices and will thus open avenues for the development of cost-effective and easily accessible next generations of electronic biosensors in clinical diagnostics and novel materials for the specific removal of pathogenic cells from human bio-samples

A Polyclonal Aptamer Library for the Specific Binding of the Gut Bacterium Roseburia intestinalis in Mixtures with Other Gut Microbiome Bacteria and Human Stool Samples

Roseburia intestinalis has received attention as a potential probiotic bacterium. Recent studies have demonstrated that changes in its intestinal abundance can cause various diseases, such as obesity, enteritis and atherosclerosis. Probiotic administration or fecal transplantation alter the structure of the intestinal flora, offering possibilities for the prevention and treatment of these diseases. However, current monitoring methods, such as 16S rRNA sequencing, are complex and costly and require specialized personnel to perform the tests, making it difficult to continuously monitor patients during treatment. Hence, the rapid and cost-effective quantification of intestinal bacteria has become an urgent problem to be solved. Aptamers are of emerging interest because their stability, low immunogenicity and ease of modification are attractive properties for a variety of applications. We report a FluCell-SELEX polyclonal aptamer library specific for R. intestinalis isolated after seven evolution rounds, that can bind and label this organism for fluorescence microscopy and binding assays. Moreover, R. intestinalis can be distinguished from other major intestinal bacteria in complex defined mixtures and in human stool samples. We believe that this preliminary evidence opens new avenues towards aptamer-based electronic biosensors as new powerful and inexpensive diagnostic tools for the relative quantitative monitoring of R. intestinalis in gut microbiomes