Flavor Structure of Warped Extra Dimension Models

We recently showed, in hep-ph/0406101, that warped extra dimensional models with bulk custodial symmetry and few TeV KK masses lead to striking signals at $B$-factories. In this paper, using a spurion analysis, we systematically study the flavor structure of models that belong to the above class. In particular we find that the profiles of the zero modes, which are similar in all these models, essentially control the underlying flavor structure. This implies that our results are robust and model independent in this class of models. We discuss in detail the origin of the signals in B-physics. We also briefly study other NP signatures that arise in rare K decays ($K \to \pi \nu \nu$), in rare top decays [$t \to c \gamma (Z, gluon)$] and the possibilty of CP asymmetries in $D^0$ decays to CP eigenstates such as $K_S \pi^0$ and others. Finally we demonstrate that with light KK masses, $\sim3$ TeV, the above class of models with anarchic $5D$ Yukawas has a ``CP problem'' since contributions to the neutron electric dipole moment are roughly 20 times larger than the current experimental bound. Using AdS/CFT correspondence, these extra-dimensional models are dual to a purely 4D strongly coupled conformal Higgs sector thus enhancing their appeal.Comment: 41 pages, 52 pages including appendice

The isospin symmetry breaking effects in Ke4K_{e4} decays

The Fermi-Watson theorem is generalized to the case of two coupled channels with different masses and applied to final state interaction in $K_{e4}$ decays. The impact of considered effect on the phase of the $\pi\pi$ scattering is estimated and shown that it can be crucial for scattering lengths extraction from experimental data on $K_{e4}$ decays

The neutron electric dipole form factor in the perturbative chiral quark model

We calculate the electric dipole form factor of the neutron in a perturbative chiral quark model, parameterizing CP-violation of generic origin by means of effective electric dipole moments of the constituent quarks and their CP-violating couplings to the chiral fields. We discuss the relation of these effective parameters to more fundamental ones such as the intrinsic electric and chromoelectric dipole moments of quarks and the Weinberg parameter. From the existing experimental upper limits on the neutron EDM we derive constraints on these CP-violating parameters.Comment: 20 pages, 3 figure

Top quark electric and chromo electric dipole moments in the general two Higgs Doublet model

We study the electric and chromo electric dipole moment of top quark in the general two Higgs Doublet model (model III). We analyse the dependency of this quantity to the new phases coming from the complex Yukawa couplings and masses of charged and neutral Higgs bosons. We observe that the electric and chromo elecric dipole moments of top quark are at the order of 10^{-21} e cm and 10^{-20} g_s cm, which are extremely large values compared to ones calculated in the SM and also two Higgs Doublet model with real Yukawa couplings.Comment: 9 pages,10 figure

Strong CP violation and the neutron electric dipole form factor

We calculate the neutron electric dipole form factor induced by the CP violating theta-term of QCD, within a perturbative chiral quark model which includes pion and kaon clouds. On this basis we derive the neutron electric dipole moment and the electron-neutron Schiff moment. From the existing experimental upper limits on the neutron electric dipole moment we extract constraints on the theta-parameter and compare our results with other approaches.Comment: 18 pages, 2 figures, accepted for publication in Phys. Atom. Nuc

Neutron Electric Dipole Moment In The Standard Model: Valence Quark Contributions

We present a complete three-loop calculation of the electric dipole moment of the $u$ and $d$ quarks in the Standard Model. For the $d$ quark, more relevant for the experimentally important neutron electric dipole moment, we find cancellations which lead to an order of magnitude suppression compared with previous estimates.Comment: 8 pages, revte

The Measure of Strong CP Violation

We investigate a controversial issue on the measure of CP violation in strong in teractions. In the presence of nontrivial topological gauge configurations, the $\theta$-term in QCD has a profound effect: it breaks the CP symmetry. The CP-violating amplitude is shown to be determined by the vacuum tunneling process, where the semiclassical method makes most sense. We discuss a long-standing dispute on whether the instanton dynamics satisfies or not the anomalous Ward identity (AWI). The strong CP violation measure, when complying with the vacuum alignment, is proportional to the topological susceptibility. We obtain an effective CP-violating lagrangian different from that provided by Baluni. To solve the IR divergence problem of the instanton computation, We present a ``classically gauged'' Georgi-Manohar model and derive an effective potential which uniquely determines an explicit $U(1)_A$ symmetry breaking sector. The CP violation effects are analyzed in this model. It is shown that the strong CP problem and the $U(1)$ problem are closely related. Some possible solutions to both problems are also discussed with new insights.Comment: 37 pages in LateX, SFU-Preprint-92-

Probing exotic phenomena at the interface of nuclear and particle physics with the electric dipole moments of diamagnetic atoms: A unique window to hadronic and semi-leptonic CP violation

The current status of electric dipole moments of diamagnetic atoms which involves the synergy between atomic experiments and three different theoretical areas -- particle, nuclear and atomic is reviewed. Various models of particle physics that predict CP violation, which is necessary for the existence of such electric dipole moments, are presented. These include the standard model of particle physics and various extensions of it. Effective hadron level combined charge conjugation (C) and parity (P) symmetry violating interactions are derived taking into consideration different ways in which a nucleon interacts with other nucleons as well as with electrons. Nuclear structure calculations of the CP-odd nuclear Schiff moment are discussed using the shell model and other theoretical approaches. Results of the calculations of atomic electric dipole moments due to the interaction of the nuclear Schiff moment with the electrons and the P and time-reversal (T) symmetry violating tensor-pseudotensor electron-nucleus are elucidated using different relativistic many-body theories. The principles of the measurement of the electric dipole moments of diamagnetic atoms are outlined. Upper limits for the nuclear Schiff moment and tensor-pseudotensor coupling constant are obtained combining the results of atomic experiments and relativistic many-body theories. The coefficients for the different sources of CP violation have been estimated at the elementary particle level for all the diamagnetic atoms of current experimental interest and their implications for physics beyond the standard model is discussed. Possible improvements of the current results of the measurements as well as quantum chromodynamics, nuclear and atomic calculations are suggested.Comment: 46 pages, 19 tables and 16 figures. A review article accepted for EPJ

Detection of regulator genes and eQTLs in gene networks

Genetic differences between individuals associated to quantitative phenotypic traits, including disease states, are usually found in non-coding genomic regions. These genetic variants are often also associated to differences in expression levels of nearby genes (they are "expression quantitative trait loci" or eQTLs for short) and presumably play a gene regulatory role, affecting the status of molecular networks of interacting genes, proteins and metabolites. Computational systems biology approaches to reconstruct causal gene networks from large-scale omics data have therefore become essential to understand the structure of networks controlled by eQTLs together with other regulatory genes, and to generate detailed hypotheses about the molecular mechanisms that lead from genotype to phenotype. Here we review the main analytical methods and softwares to identify eQTLs and their associated genes, to reconstruct co-expression networks and modules, to reconstruct causal Bayesian gene and module networks, and to validate predicted networks in silico.Comment: minor revision with typos corrected; review article; 24 pages, 2 figure

The T2K Side Muon Range Detector

The T2K experiment is a long baseline neutrino oscillation experiment aiming to observe the appearance of {\nu} e in a {\nu}{\mu} beam. The {\nu}{\mu} beam is produced at the Japan Proton Accelerator Research Complex (J-PARC), observed with the 295 km distant Super- Kamiokande Detector and monitored by a suite of near detectors at 280m from the proton target. The near detectors include a magnetized off-axis detector (ND280) which measures the un-oscillated neutrino flux and neutrino cross sections. The present paper describes the outermost component of ND280 which is a side muon range detector (SMRD) composed of scintillation counters with embedded wavelength shifting fibers and Multi-Pixel Photon Counter read-out. The components, performance and response of the SMRD are presented.Comment: 13 pages, 19 figures v2: fixed several typos; fixed reference