Achradina pulchra, a Unique Dinoflagellate (Amphilothales, Dinophyceae) with a Radiolarian-like Endoskeleton of Celestite (Strontium Sulfate)

We examined the planktonic dinoflagellate Achradina pulchra by light and scanning electron microscopies from the South and North Atlantic oceans. The basket-like skeleton has been interpreted as a thick cell covering or pellicle of organic composition, or as a siliceous endoskeleton. The skeleton of Achradina is known only from fresh material, being absent in preserved samples, sediments or the fossil record. X-ray microanalysis revealed that the endoskeleton of Achradina is composed of celestite (strontium sulfate) with traces of barite (barium sulfate), two minerals that readily dissolve after cell death. To date, Acantharia and polycystine radiolarians (Retaria) were the only known organisms with a skeleton of this composition. We can now add a dinoflagellate to the list of such mineralized skeletons, which influence on the biogeochemical fluxes of strontium and barium in the oceans. Moreover, we provided the first molecular data for a skeleton-bearing dinoflagellate. Molecular phylogeny based on the SSU rRNA gene sequences revealed that Achradina and several environmental clones branched as an independent lineage within the short-branching dinokaryotic dinoflagellates. To date, seven clades of dinokaryotic dinoflagellates are known living as symbionts in the endoplasm of Acantharia and polycystine radiolarians. Because celestite built skeletons were unknown outside radiolarians, we suggested that the ancestors of Achradina acquired the genes implicated in the deposition of strontium and barium from radiolarian hosts though a horizontal gene transfer event between microbial eukaryotes

Provenance and fate of organic carbon in three submarine canyons from the Portuguese Margin: Implications for transport processes of material in continental margins

Submarine canyons are key environments on the continental margin that are affected by unique and dynamic but often episodic and complex processes, and are difficult to study. Canyons are considered hotspots of biodiversity and enhancement of primary productivity at canyon heads has often been postulated to support this, although the evidence is sparse. Additionally canyons are considered to be fast-track corridors for material transported from the land to the deep sea and they are considered major pathways for the transportation and burial of organic carbon, acting as buffers for sediment and carbon storage. Organic geochemical and isotopic markers are often used as reliable indicators for the supply, quality and fate of organic matter in marine systems. In this study they have been used to test the above hypotheses in three contrasting submarine canyons (Nazaré, Setubal/Lisbon and Cascais) of the Portuguese Margin. The elemental and lipid biomarker composition of suspended particulate organic matter of surface waters close to the studied canyon heads had a fresh phytoplankton signal, however there was no clear evidence for enhanced primary productivity by comparison to the neighbouring open slope. By contrast, mid-depth waters (700-1600 m), that are dominated by the northward flowing Mediterranean Outflow Water, had high lipid content and abundant mesozooplankton biomarkers, perhaps reflecting zooplankton activity focused at the boundaries of distinct water masses. In the waters close to the floor of the Nazaré Canyon the presence of elemental sulphur (a product of sediment diagenesis) and high molecular weight hydrocarbons (recalcitrant, terrestrial markers) indicated high levels of resuspended material, particularly at the Upper section (<2000m depth) of the canyon. Resuspension was less evident in other locations suggesting that Nazaré Canyon is the most “active” channel. Nazaré Canyon sediments (0-10 cm) had significantly higher total organic carbon concentrations than the other canyons and the neighbouring open slope, whereas the opposite was observed for carbonate contents. Increased organic terrestrial contributions in Nazaré are also supported by the high molar C/N ratios and low carbon stable isotopic values of the surface (0-1cm) sediment sections. This suggests that the Nazaré Canyon receives more terrestrial, organic-rich material than the other locations, despite the luck of riverine output at the canyon head. By contrast sedimentary organic matter from Setubal/Lisbon and Cascais Canyons had lower C/N ratios suggesting that they received less terrestrial material, despite their proximity to major river systems (Duro, Sado). There is an apparent increasing trend of terrestrial contributions with depth within Nazaré Canyon. This is attributed to the preferential removal of labile, marine OM from the surficial sediments, leaving them “enriched” in more recalcitrant terrestrial material with increasing depth and distance from the shore. However, OM in the Nazaré Canyon surficial sediments is the least altered as a whole. This is supported by the nitrogen stable isotopes and the Oxygen Index (OI; a proxy of OM oxidation state) of surficial sediments. In Nazaré Canyon these are low compared to the other canyons and the open slope. The presence of elemental sulphur in the surficial sediments of Nazaré canyon (absent in all other sediments), is consistent with a shallow (few mm) boundary of bacterial sulphate reduction/sulphide oxidation. This is probably related to the high sedimentation rates that have been measured in Nazaré canyon (but not in any other locations in this study) that limit oxygen exposure time (and hence extensive oxidation) of the sediments. The above observations suggest that Nazaré Canyon is both an important depocentre of organic carbon and the main channel for transporting material from the Portuguese Margin to the deep ocean. However the absence of major river systems close to the canyon head implies that there are important and as yet unclear redistribution processes, that are probably related to the complex oceanographic regime of the region

Temporal and spatial variation in the Nazaré Canyon (Western Iberian margin): Inter-annual and canyon heterogeneity effects on meiofauna biomass and diversity

The Nazaré Canyon on the Portuguese Margin (NE Atlantic) was sampled during spring-summer for three consecutive years (2005–2007), permitting the first inter-annual study of the meiofaunal communities at the Iberian Margin at two abyssal depths (~3500 m and ~4400 m). Using new and already published data, the meiofauna standing stocks (abundance and biomass) and nematode structural and functional diversity were investigated in relation to the sediment biogeochemistry (e.g. organic carbon, nitrogen, chlorophyll a, phaeopigments) and grain size. A conspicuous increase in sand content from 2005 to 2006 and decrease of phytodetritus at both sites, suggested the occurrence of one or more physical disturbance events. Nematode standing stocks and trophic diversity decreased after these events, seemingly followed by a recovery/recolonisation period in 2007, which was strongly correlated with an increase in the quantity and bioavailability of phytodetrital organic matter supplied. Changes in meiofauna assemblages, however, also differed between stations, likely because of the contrasting hydrodynamic and food supply conditions. Higher meiofauna and nematode abundances, biomass and trophic complexity were found at the shallowest canyon station, where the quantity, quality and bioavailability of food material were higher than at the deeper site. The present results suggest that even though inter-annual variations in the sedimentary environment can regulate the meiofauna in the abyssal Nazaré Canyon, heterogeneity between sampling locations in the canyon were more pronounced

Rapid detection of microfibres in environmental samples using open-source visual recognition models

Microplastics, particularly microfibres (< 5 mm), are a significant environmental pollutant. Detecting and quantifying them in complex matrices is challenging and time-consuming. This study presents two open-source visual recognition models, YOLOv7 and Mask R-CNN, trained on extensive datasets for efficient microfibre identification in environmental samples. The YOLOv7 model is a new introduction to the microplastic quantification research, while Mask R-CNN has been previously used in similar studies. YOLOv7, with 71.4 % accuracy, and Mask R-CNN, with 49.9 % accuracy, demonstrate effective detection capabilities. Tested on aquatic samples from Seyðisfjörður, Iceland, YOLOv7 rapidly identifies microfibres, outperforming manual methods in speed. These models are user-friendly and widely accessible, making them valuable tools for microplastic contamination assessment. Their rapid processing offers results in seconds, enhancing research efficiency in microplastic pollution studies. By providing these models openly, we aim to support and advance microplastic quantification research. The integration of these advanced technologies with environmental science represents a significant step forward in addressing the global issue of microplastic pollution and its ecological and health impacts

Driven by speculation, not by impact - the effects of plastic on fish species.

Plastic products have facilitated the daily lives of an exponentially increasing world population for over 70 years, whilst inadvertently creating one of the most topical environmental issues of the 21st Century: the plastic pollution crisis. Since the mid-20th Century, plastic production has expanded continuously to global production levels of over 350 million tons in 2018 (Thompson et al. 2009; Plastics Europe, 2019). Articles surrounding the presence and impacts of plastic pollution on aquatic animals including fish species have become a regular occurrence on media platforms (Kramm et al. 2018) and scientific publications (Henderson & Green, 2020); however, while iconic pictures of individual fish and other taxa with variously attached or ingested plastics might make headlines, they do not of themselves prove impacts, absolute or relative, at population levels

High Abundances of Microplastic Pollution in Deep-Sea Sediments: Evidence from Antarctica and the Southern Ocean.

Plastic pollution in Antarctica and the Southern Ocean has been recorded in scientific literature since the 1980s; however, the presence of microplastic particles (<5 mm) is less understood. Here, we aimed to determine whether microplastic accumulation would vary among Antarctic and Southern Ocean regions through studying 30 deep-sea sediment cores. Additionally, we aimed to highlight whether microplastic accumulation was related to sample depth or the sediment characteristics within each core. Sediment cores were digested and separated using a high-density sodium polytungstate solution (SPT) and microplastic particles were identified using micro-Fourier-transform infrared spectroscopy (μFTIR). Microplastic pollution was found in 93% of the sediment cores (28/30). The mean (±SE) microplastics per gram of sediment was 1.30 ± 0.51, 1.09 ± 0.22, and 1.04 ± 0.39 MP/g, for the Antarctic Peninsula, South Sandwich Islands, and South Georgia, respectively. Microplastic fragment accumulation correlated significantly with the percentage of clay within cores, suggesting that microplastics have similar dispersion behavior to low density sediments. Although no difference in microplastic abundance was found among regions, the values were much higher in comparison to less remote ecosystems, suggesting that the Antarctic and Southern Ocean deep-sea accumulates higher numbers of microplastic pollution than previously expected

Occurrence and sources of microplastics on Arctic beaches: Svalbard

Plastic pollution is recognised as a major global environmental concern, especially within marine environments. The small size of microplastics (< 5 mm) make them readily available for ingestion by organisms in all trophic levels. Here, four beach sites in Adventfjorden on the west coast of Svalbard, were sampled with the aim of investigating the occurrence and abundance of microplastics on beaches to assess potential sources of microplastic pollution. High variability in microplastic amount, type and polymers were found at all sites ranging from means of 0.7 n/g (number) at the remotest site and 2.2 n/g (number) at the site closest to Longyearbyen. Statistical analyses suggested that patterns observed were linked to direct proximity to human activities through land uses and effluent discharge. These findings point to an increased importance of localised factors on driving elevated microplastic pollution in beach sediments over oceanic controls in remote but inhabited Arctic locations and have important implications for our understanding and future assessments of microplastic pollution in such settings

Isotopic signature in isolated south-western populations of European brown bear (Ursus arctos)

Stable isotope analysis of animal tissue samples is increasingly used to study the trophic ecology of target species. The isotopic signatures respond to the type of diet, but also to the environmental conditions of their habitat. In the case of omnivorous, seasonal or opportunistic feeding species, the interpretation of isotopic values is more complex, as it is largely determined by food selection, either due to individual choice or because of availability. We analysed C and N isotopes in brown bear (Ursus arctos) hair from four isolated populations of south-western Europe (Cantabrian, Pyrenees, Central Apennines and Alpine) accounting for the geographical and climatic differences among the four areas. We found inter-population differences in isotopic signatures that cannot be attributed to climatic differences alone, indicating that at least some bears from relatively higher altitude populations experiencing higher precipitation (Pyrenees) show a greater consumption of animal foods than those from lower altitudes (Cantabrian and Apennines). The quantification of isotopic niche space using Layman's metrics identified significant similarities between the Cantabrian and Central Apennine samples that markedly differ from the Pyrenean and Alpine. Our study provides a baseline to allow further comparisons in isotopic niche spaces in a broad ranged omnivorous mammal, whose European distribution requires further conservation attention especially for southern isolated populations

The accumulation of microplastic pollution in a commercially important fishing ground

The Irish Sea is an important area for Norway Lobster Nephrops norvegicus fisheries, which are the most valuable fishing resource in the UK. Norway lobster are known to ingest microplastic pollution present in the sediment and have displayed reduced body mass when exposed to microplastic pollution. Here, we identified microplastic pollution in the Irish Sea fishing grounds through analysis of 24 sediment samples from four sites of differing proximity to the Western Irish Sea Gyre in both 2016 and 2019. We used µFTIR spectroscopy to identify seven polymer types, and a total of 77 microplastics consisting of fibres and fragments. The mean microplastics per gram of sediment ranged from 0.13 to 0.49 and 0 to 1.17 MP/g in 2016 and 2019, respectively. There were no differences in the microplastic counts across years, and there was no correlation of microplastic counts with proximity to the Western Irish Sea Gyre. Considering the consistently high microplastic abundance found in the Irish Sea, and the propensity of N. norvegicus to ingest and be negatively impacted by them, we suggest microplastic pollution levels in the Irish Sea may have adverse impacts on N. norvegicus and negative implications for fishery sustainability in the future

Bottom trawling at Whittard Canyon: Evidence for seabed modification, trawl plumes and food source heterogeneity

Fishing vessels are attracted to the dendritic Whittard Canyon system due to the abundance and diversity of species found there. Both midwater and bottom trawling are commonplace, including on deep canyon channel floors. Bottom trawling is identified here as a possible cause of changes to seafloor roughness along the canyon interfluves. An Arc Chord Ratio (ACR) rugosity index is calculated for the Whittard area and correlated with Vessel Monitoring System (VMS) data using various statistical models. Over higher slopes or rougher ground the heavily fished locations show a more homogeneous rugosity distribution than those lightly fished, indicating possible smoothing of the seabed. Bottom trawling activity on adjacent interfluves/shelf is known to generate energetic turbid, sediment plumes within the canyon branches to 2500 m depth, with elevated Suspended Particulate Matter (SPM) concentrations in the water column up to 400 m above the seabed. Lipid biomarker analysis of organic material collected from these plumes showed higher concentrations of total lipids at sites that are intensively trawled (east). In comparison to sites that are less intensively trawled (west), higher contributions of fatty alcohols were detected. While lower concentrations of unsaturated fatty acids were detected, biomarkers indicative of phytoplankton accounted for 93.4 ± 0.7% of total lipids identified from eastern samples suggesting rapid transport of labile compounds. Results presented here suggest that intensive trawling induced changes to sediment transport will complicate the interpretation of biogeochemical property distributions at canyon systems, particularly from single surveys. Anthropogenically generated heterogeneity in sediment supply and character will also impact on habitat suitability for resident ecosystems