Cramer-Rao Lower Bound for Point Based Image Registration with Heteroscedastic Error Model for Application in Single Molecule Microscopy

The Cramer-Rao lower bound for the estimation of the affine transformation parameters in a multivariate heteroscedastic errors-in-variables model is derived. The model is suitable for feature-based image registration in which both sets of control points are localized with errors whose covariance matrices vary from point to point. With focus given to the registration of fluorescence microscopy images, the Cramer-Rao lower bound for the estimation of a feature's position (e.g. of a single molecule) in a registered image is also derived. In the particular case where all covariance matrices for the localization errors are scalar multiples of a common positive definite matrix (e.g. the identity matrix), as can be assumed in fluorescence microscopy, then simplified expressions for the Cramer-Rao lower bound are given. Under certain simplifying assumptions these expressions are shown to match asymptotic distributions for a previously presented set of estimators. Theoretical results are verified with simulations and experimental data

The Effect of Freeze-Thaw Cycles on Gene Expression Levels in Lymphoblastoid Cell Lines

Epstein-Barr virus (EBV) transformed lymphoblastoid cell lines (LCLs) are a widely used renewable resource for functional genomic studies in humans. The ability to accumulate multidimensional data pertaining to the same individual cell lines, from complete genomic sequences to detailed gene regulatory profiles, further enhances the utility of LCLs as a model system. However, the extent to which LCLs are a faithful model system is relatively unknown. We have previously shown that gene expression profiles of newly established LCLs maintain a strong individual component. Here, we extend our study to investigate the effect of freeze-thaw cycles on gene expression patterns in mature LCLs, especially in the context of inter-individual variation in gene expression. We report a profound difference in the gene expression profiles of newly established and mature LCLs. Once newly established LCLs undergo a freeze-thaw cycle, the individual specific gene expression signatures become much less pronounced as the gene expression levels in LCLs from different individuals converge to a more uniform profile, which reflects a mature transformed B cell phenotype. We found that previously identified eQTLs are enriched among the relatively few genes whose regulations in mature LCLs maintain marked individual signatures. We thus conclude that while insight drawn from gene regulatory studies in mature LCLs may generally not be affected by the artificial nature of the LCL model system, many aspects of primary B cell biology cannot be observed and studied in mature LCL cultures.</p

Acceptance and commitment therapy as an adjunct to the MOVE! programme: a randomized controlled trial.

ObjectiveThe current study tested the efficacy of an acceptance and commitment therapy (ACT) group intervention for disinhibited eating behaviour as an adjunct to the Veterans Affairs MOVE!© weight management programme.MethodsVeterans (N = 88) with overweight or obesity who completed the MOVE! weight management programme and self-identified as having problems with 'stress-related eating' were randomized to four 2-h weekly ACT sessions or a continued behavioural weight-loss (BWL) intervention. Assessments were completed at baseline, post-treatment and 3- and 6-month follow-up on outcomes of interest including measures of disinhibited eating patterns, obesity-related quality of life, weight-related experiential avoidance and weight.ResultsThe BWL group exhibited significantly greater reductions in binge eating behaviour at post-treatment compared with the ACT group. Significant improvements in other outcomes were found with minimal differences between groups. In both groups, decreases in weight-related experiential avoidance were related to improvements in binge eating behaviour.ConclusionsTaken together, the continued BWL intervention resulted in larger improvements in binge eating behaviour than the ACT intervention. The two groups showed similar improvements in other disinhibited eating outcomes. Future studies are encouraged to determine if more integrated or longer duration of ACT treatment may maximize eating outcomes in MOVE.Trial Registration Number: This trial was registered with ClinicalTrials.gov database (NCT01757847)

Functional relationships among vegetation, nocturnal insects, and bats in riparian areas of the Oregon Coast Range

Vegetation provides food for many insects, and many insects serve as food for bats. We investigated the linkages among these three trophic levels in riparian areas throughout the Oregon Coast Range by examining the influence of vegetation cover, composition, and structure on the activity of nocturnal insects and bats, the influence of insect abundance on activity of bats, and the diets of bats. Vegetation characteristics at the stream reach spatial scale explained more variation in bat activity than did vegetation characteristics measured at larger spatial scales. Vegetation characteristics most closely associated with bat activity varied among species of bat, included both canopy and shrub attributes, and apparently operated through constraints imposed by vegetation structure on bat flight capabilities rather than through regulation of the distribution of insect prey abundance. The two orders of insects most frequently consumed by bats were Lepidoptera and Diptera. Three species of bat fed predominantly on small insects likely of aquatic origin, and activity of these species was correlated with local abundance of small insects. The seven remaining species of bat fed predominantly on larger, terrestrial insects, and their activity was not correlated with local abundance of insects. Variation among stream reaches in the number of captures and biomass of the six most commonly captured orders of insects (Diptera, Lepidoptera, Trichoptera, Ephemeroptera, Coleoptera, and Hymenoptera) was better explained by cover of deciduous canopy than by any other vegetation characteristic investigated. The number of captures and biomass of these insects increased as deciduous canopy cover increased. Canopy composition explained variation in macro-moth community composition as well: species richness and cover of canopy trees and of shrubs were associated with variation in moth species composition. Number of moths captured, biomass, and Shannon’s species diversity were greater in deciduous- than conifer-dominated stream reaches. Deciduous shrub and canopy trees play an important role in the determination of nocturnal flying insect abundance and community composition. Management activities that promote deciduous vegetation in riparian areas in this region are likely to help maintain biodiversity and abundance of nocturnal insects, which in turn serve as food resources for bats

Helium Nanodroplet Infrared Action Spectroscopy of the Proton-Bound Dimer of Hydrogen Sulfate and Formate: Examining Nuclear Quantum Effects

The proton-bound dimer of hydrogen sulfate and formate is an archetypal structure for ionic hydrogen-bonding complexes that contribute to biogenic aerosol nucleation. Of central importance for the structure and properties of this complex is the location of the bridging proton connecting the two conjugate base moieties. The potential energy surface for bridging proton translocation features two local minima, with the proton localized at either the formate or hydrogen sulfate moiety. However, electronic structure methods reveal a shallow potential energy surface governing proton translocation, with a barrier on the order of the zero-point energy. This shallow potential complicates structural assignment and necessitates a consideration of nuclear quantum effects. In this work, we probe the structure of this complex and its isotopologues, utilizing infrared (IR) action spectroscopy of ions captured in helium nanodroplets. The IR spectra indicate a structure in which a proton is shared between the hydrogen sulfate and formate moieties, HSO4-···H+···-OOCH. However, because of the nuclear quantum effects and vibrational anharmonicities associated with the shallow potential for proton translocation, the extent of proton displacement from the formate moiety remains unclear, requiring further experiments or more advanced theoretical treatments for additional insight

The Detectability of Pair-Production Supernovae at z < 6

Nonrotating, zero metallicity stars with initial masses 140 < M < 260 solar masses are expected to end their lives as pair-production supernovae (PPSNe), in which an electron-positron pair-production instability triggers explosive nuclear burning. Interest in such stars has been rekindled by recent theoretical studies that suggest primordial molecular clouds preferentially form stars with these masses. Since metal enrichment is a local process, the resulting PPSNe could occur over a broad range of redshifts, in pockets of metal-free gas. Using the implicit hydrodynamics code KEPLER, we have calculated a set of PPSN light curves that addresses the theoretical uncertainties and allows us to assess observational strategies for finding these objects at intermediate redshifts. The peak luminosities of typical PPSNe are only slightly greater than those of Type Ia, but they remain bright much longer (~ 1 year) and have hydrogen lines. Ongoing supernova searches may soon be able to limit the contribution of these very massive stars to < 1% of the total star formation rate density out to z=2 which already provides useful constraints for theoretical models. The planned Joint Dark Energy Mission satellite will be able to extend these limits out to z=6.Comment: 12 pages, 6 figures, ApJ in press; slightly revised version, a few typos correcte

The Chicken Yolk Sac IgY Receptor, a Mammalian Mannose Receptor Family Member, Transcytoses IgY across Polarized Epithelial Cells

In mammals the transfer of passive immunity from mother to young is mediated by the MHC-related receptor FcRn, which transports maternal IgG across epithelial cell barriers. In birds, maternal IgY in egg yolk is transferred across the yolk sac to passively immunize chicks during gestation and early independent life. The chicken yolk sac IgY receptor (FcRY) is the ortholog of the mammalian phospholipase A2 receptor, a mannose receptor family member, rather than an FcRn or MHC homolog. FcRn and FcRY both exhibit ligand binding at the acidic pH of endosomes and ligand release at the slightly basic pH of blood. Here we show that FcRY expressed in polarized mammalian epithelial cells functioned in endocytosis, bidirectional transcytosis, and recycling of chicken FcY/IgY. Confocal immunofluorescence studies demonstrated that IgY binding and endocytosis occurred at acidic but not basic pH, mimicking pH-dependent uptake of IgG by FcRn. Colocalization studies showed FcRY-mediated internalization via clathrin-coated pits and transport involving early and recycling endosomes. Disruption of microtubules partially inhibited apical-to-basolateral and basolateral-to-apical transcytosis, but not recycling, suggesting the use of different trafficking machinery. Our results represent the first cell biological evidence of functional equivalence between FcRY and FcRn and provide an intriguing example of how evolution can give rise to systems in which similar biological requirements in different species are satisfied utilizing distinct protein folds