Epitope Prediction by Novel Immunoinformatics Approach: A State-of-the-art Review

Immunoinformatics is a science that helps to create significant immunological information using bioinformatics softwares and applications. One of the most important applications of immunoinformatics is the prediction of a variety of specific epitopes for B cell recognition and T cell through MHC class I and II molecules. This method reduces costs and time compared to laboratory tests. In this state-of-the-art review, we review about 50 papers to find the latest and most used immunoinformatic tools as well as their applications for predicting the viral, bacterial and tumoral structural and linear epitopes of B and T cells. In the clinic, the main application of prediction of epitopes is for designing peptide-based vaccines. Peptide-based vaccines are a considerably potential alternative to low-cost vaccines that may reduce the risks related to the production of common vaccines. © 2019, Springer Nature B.V

VectorDisk: a microfluidic platform integrating diagnostic markers for evidence-based mosquito control

Effective mosquito monitoring relies on the accurate identification and characterization of the target population. Since this process requires specialist knowledge and equipment that is not widely available, automated field-deployable systems are highly desirable. We present a centrifugal microfluidic cartridge, the VectorDisk, which integrates TaqMan PCR assays in two feasibility studies, aiming to assess multiplexing capability, specificity, and reproducibility in detecting disk-integrated vector-related assays. In the first study, pools of 10 mosquitoes were used as samples. We tested 18 disks with 27 DNA and RNA assays each, using a combination of multiple microfluidic chambers and detection wavelengths (geometric and color multiplexing) to identify mosquito and malaria parasite species as well as insecticide resistance mechanisms. In the second study, purified nucleic acids served as samples to test arboviral and malaria infective mosquito assays. Nine disks were tested with 14 assays each. No false positive results were detected on any of the disks. The coe cient of variation in reproducibility tests was <10%. The modular nature of the platform, the easy adaptation of the primer/probe panels, the cold chain independence, the rapid (2-3 h) analysis, and the assay multiplexing capacity are key features, rendering the VectorDisk a potential candidate for automated vector analysis

Trends in ovarian cancer incidence in Iran

Background: Cancer is amajorcause of morbidityandmortality,amongwhichovarian cancer has a high incidenceandcase fatality. Gaining insight into the epidemiology and trends of ovarian cancer can be very influential in cancer screening and treatments programming. This study aimed to investigate the trends in the incidence of ovarian cancer in Iran, because this issue has been neglected so far. Methods: This study is a re-analysis of existing data from the cancer data recording system in Iran during the years 2003 to 2009. The incidence rates reported were standardized according to the world health organization (WHO) and the trend in the incidence of this disease was determined by STATA software and the significance of the morbidity trend diagram was also derived via WINPEPI software. Results: The statistics of cancer registry center shows an increasing trend of ovarian cancer from 2003 to 2008, while it decreased from 2008 to 2009. During this period, 6078 cases of ovarian cancer were registered in Iran, increasing from 591 cases in 2003 to 1077 in 2009, which shows an approximately 2-fold increase in the incidence of registered cases. During these seven years, the highest incidence rate was seen in Markazi province with 6.33 per 100,000 persons and the least in Kohkiloye-va-Boyerahmad province with zero incidence. Almost all provinces, except a few, had increasing incidence of ovarian cancer. Conclusions: According to the results of the study, the incidence of ovarian cancer is increasing in Iran, especially in the central and northwestern regions of the country. This increase may be due to changing the patterns of risk factors for this disease, such as changes in lifestyle in the population, which will lead to changes in the incidence of the disease. Hence, due to the increase in incidence of this cancer, it is recommended to implement screening and early detection programs in high risk areas and populations. © 2016, Iranian Journal of Cancer Prevention

Genetic improvement of rainbow trout in Iran

Inthisstudy, Iranian and French male and female Oncorhynchus mykiss broodstocks were invided into two groups 50 and 24 respectivelyin Research center of genetic and breeding of coldwater fishers, Yasouj,Iran and the genetic structure of them was investigated using 6 microsatellite markers. Along with broodstock maturation, fertilization 1:1(female:male) were randomly assigned and occurred in25 of12Iranian andFrench treatment respectively. Reproductive parameters were recordedfor the whole family.Average number of observed alleles in Iranian and French stocks was 6.68 and 6.83, respectively.Average number of effective alleles in Iranian and French stocks was 3.13 and 3.45 respectively.Fixation index Fstwas calculated based on allelic frequency between two stocks was 0.058 with significant difference between 2 stocks. Eyed percentage for french broodstock calaulated zero and deleted. Fertilization rate(100-0), the eyed percentage (98-0), The hatch rate(98- 0),the averagefecundity4114.708, the average eggs size 4.88 mm, Survivalinthe first three months 19-73% calculated for Iranian broodstocks. Considering the quality of eggs and larvaeat different stages and selection between the different family and the within family remained 10 treatments and are keptas future broodstocks. Therelationship between fecundity-egg size, fecundity-weight, fecundity-length, egg sizeweightwas performed using regression. The results showed that Fecundity wasinfluenced more byweight and productivelength. The research is beginning to IDthe broodstockin our country

Antioxidant and antibacterial properties of the Melissa officinalis essential oil

Background: Increasing drug resistance in microorganisms and concerns for side effects of chemical preservatives, especially in the food industry, have led to extensive studies on novel potential agents with natural origin. Objective: The aim of this study was to determine the antioxidant and antibacterial properties of the Melissa officinalis essential oil. Methods: This experimental study was carried out at Islamic Azad University, Saveh Branch in 2012-2013. The essential oil was extracted from different parts of the plant (leaves, stem and flower) by hydrodistillation. The essential oil was phytochemically characterized by gas chromatography-mass spectrometry (GC-MS) analysis. Antibacterial properties were examined by disc diffusion and microtiter plates. Antioxidant activity was examined by diphenyl-picryl-hydrazyl(DPPH) assay. Findings: E-Citral in leaves, 2-Cyclohexen-1-one, 2-methyl-5-(1-methylethenyl) in stem, and Trans-Carveol in flower were the major components identified in the Melissa officinalis. Among different parts essential oil, the highest and the lowest antibacterial activity were related to leaves and stem, respectively. The largest diameter of the inhibition growth zone for Staphylococcus aureus and Pseudomonas aeruginosa was related to the leaves essential oil. The highest antioxidant activity was related to the leaves essential oil in DPPH assay. Conclusion: With regards to the results, the Melissa officinalis essential oil can be used as a natural preservative for increasing the shelf life of foods

The Effect of Cognitive-Behavioral Counseling on Anxiety and Aggression Women with Sexual Dysfunction

Abstract Background and aim: According to the American Psychiatric Association female sexual dysfunction are classified in four categories: sexual desire disorders, arousal, orgasm and pain. Having chronic Sexual dysfunction can lead to anxiety, depression, aggression and create problems in other aspects of life. The aim of this study was to Investigate the effect of cognitive-behavior counseling on anxiety and aggression in women with sexual dysfunction. Methods: In this clinical trial, 20 women were referred to Taleghani Hospital in Tehran with anxiety and aggression of sexual problems selected to measure sexual satisfaction. Glombok Rust questionnaire was used to measured the sexual satisfaction and Spielberger Questionnaire 40-item for Anxiety and Buss and Mark Perry questionnaire for aggression. Data were statistically analyzed by t test. Results: in general, the mean total of sexual satisfaction decreased from 79.05 at pretest to 7.35 at posttest p <0.05). the mean pretest of physical aggression from 28.2 and verbal aggression from 17.3 and nervous aggression from 28.95 followed by the aggression of the enemy from 29.95, have declined in post test to 12. 55 , 7.8, 12.3, and 3/12 respectively ( p <0.05). the results of Spielberger questionnaire showed that the mean pre-test state and trait anxiety were decreased from 63 and 62.5 to 35.1 and 34.15 respectively (p <0.05). Conclusion: Cognitive-behavioral counseling may not only have a significant effect in reducing sexual dysfunction in women, but also a significant role in reducing anxiety and aggression as reactions with this disorder. Key words: Sexual Dysfunction, Anxiety, Aggression, Wome

Thermally stable high numerical aperture integrated waveguides and couplers for the 3 mu m wavelength range

The femtosecond laser direct write technique was used to fabricate mid-infrared compatible waveguide couplers into Suprasil 3001, a fused silica glass with an OH content of as low as ≤1 ppm. Smooth positive step-index change multi-scan waveguides were produced with a high index contrast of 1 × 10−2, measured directly using quadriwave lateral shearing interferometry. Waveguides were annealed at 400 °C for 15 h and found to be highly stable, with only &lt;5% reduction in positive index change. Brillouin microscopy and cathodoluminescence are introduced as novel tools that complement Raman mapping and electron microscopy for the investigation of the laser-induced structural changes within the glass matrix, and it was found that although a uniform step index profile is observed across the entire guiding region, different physical mechanisms underpin the index change in the upper and lower sections of the waveguide cross-section, respectively. Waveguides were optimized for mode-matching with optical fibers for the 3.2 μm wavelength range, and evanescent four-port directional couplers with coupling ratios ranging from 5:95 to 50:50 were designed and fabricated. This demonstration opens the door to the development of fully integrated and temperature-stable hybrid chip/fiber systems for the important mid-infrared spectral range. </jats:p

Effects of a multi-session Cognitive Bias Modification program on interpretative biases and social anxiety symptoms in a sample of Iranian socially-anxious students

This study examines the effects of a multi-session Cognitive Bias Modification (CBM) program on interpretative biases and social anxiety in an Iranian sample. Thirty-six volunteers with a high score on social anxiety measures were recruited from a student population and randomly allocated into the experimental and control groups. In the experimental group, participants received 4 sessions of positive CBM for interpretative biases (CBM-I) over 2 weeks in the laboratory. Participants in the control condition completed a neutral task matched the active CBM-I intervention in format and duration but did not encourage positive disambiguation of socially ambiguous scenarios. The results indicated that after training the positive CBM-I group exhibited more positive (and less negative) interpretations of ambiguous scenarios and less social anxiety symptoms relative to the control condition at both 1 week post-test and 7 weeks follow-up. It is suggested that clinical trials are required to establish the clinical efficacy of this intervention for social anxiety