Comparison of anonymous and targeted molecular markers for the estimation of genetic diversity in ex situ conserved Lactuca

The anonymous marker systems microsatellites (simple sequence repeats), amplified fragment length polymorphisms and sequence-specific amplified polymorphisms were compared with the targeted marker systems sequence-related amplified polymorphisms, target region amplification polymorphisms and nucleotide binding site profiling for their ability to describe the genetic diversity in a selected set of 80 Lactuca accessions. The accessions were also described morphologically, and all characterisation methods were evaluated against the genetic diversity assessed by a panel of three crop experts. The morphological data showed a low level of association with the molecular data, and did not display a consistently better relationship with the experts’ assessments in comparison with the molecular data. In general, the diversity described by the targeted molecular markers did not differ markedly from that of the anonymous markers, resulting in only slight differences in performance when related to the expert-based assessments. It was argued that markers targeted to specific gene sequences may still behave as anonymous markers and that the type of marker system used is irrelevant when at low taxonomic levels a clear genetic structure is absent due to intensive breeding activities

Wild Lactuca Species in North America

This chapter presents a brief history of the uses of lettuce (Lactuca sativa L.) and its wild North American relatives, and reviews the agricultural importance of lettuce and challenges in its cultivation, in relation to nutritional quality, diseases, pests, and edaphic and climatic limitations. The evolution and taxonomy of the genus Lactuca are presented, with a primary focus on the wild Lactuca species of North America, their characterization, biogeography and distribution, habitat ecology, and genepools. Specific examples of phenotypic variability, genetic diversity and disease resistance of wild Lactuca taxa from both published reports and recent evaluations conducted in our laboratory are also presented. The past (and future) exploitation of wild Lactuca relatives in lettuce breeding is examined and discussed in the broader context of crop improvement. The current status of in situ and ex situ conservation of wild and weedy North American Lactuca is reviewed, along with recommendations on how these genetic resources could be better conserved and utilized.This is a manuscript of a chapter published as Lebeda A., Křístková E., Doležalová I., Kitner M., Widrlechner M.P. (2019) Wild Lactuca Species in North America. In: Greene S., Williams K., Khoury C., Kantar M., Marek L. (eds) North American Crop Wild Relatives, Volume 2. Springer, Cham. doi: 10.1007/978-3-319-97121-6_5. Posted with permission.</p

Wild Lactuca Species in North America

This chapter presents a brief history of the uses of lettuce (Lactuca sativa L.) and its wild North American relatives, and reviews the agricultural importance of lettuce and challenges in its cultivation, in relation to nutritional quality, diseases, pests, and edaphic and climatic limitations. The evolution and taxonomy of the genus Lactuca are presented, with a primary focus on the wild Lactuca species of North America, their characterization, biogeography and distribution, habitat ecology, and genepools. Specific examples of phenotypic variability, genetic diversity and disease resistance of wild Lactuca taxa from both published reports and recent evaluations conducted in our laboratory are also presented. The past (and future) exploitation of wild Lactuca relatives in lettuce breeding is examined and discussed in the broader context of crop improvement. The current status of in situ and ex situ conservation of wild and weedy North American Lactuca is reviewed, along with recommendations on how these genetic resources could be better conserved and utilized

Relativistic four-component calculations of indirect nuclear spin-spin couplings with efficient evaluation of the exchange-correlation response kernel

In this work, we report on the development and implementation of a new scheme for efficient calculation of indirect nuclear spin-spin couplings in the framework of four-component matrix Dirac-Kohn-Sham approach termed matrix Dirac-Kohn-Sham restricted magnetic balance resolution of identity for J and K, which takes advantage of the previous restricted magnetic balance formalism and the density fitting approach for the rapid evaluation of density functional theory exchange-correlation response kernels. The new approach is aimed to speedup the bottleneck in the solution of the coupled perturbed equations: evaluation of the matrix elements of the kernel of the exchange-correlation potential. The performance of the new scheme has been tested on a representative set of indirect nuclear spin-spin couplings. The obtained results have been compared with the corresponding results of the reference method with traditional evaluation of the exchange-correlation kernel, i.e., without employing the fitted electron densities. Overall good agreement between both methods was observed, though the new approach tends to give values by about 4%-5% higher than the reference method. On the average, the solution of the coupled perturbed equations with the new scheme is about 8.5 times faster compared to the reference method