The Real and Redshift Space Density Distribution Function for Large-Scale Structure in the Spherical Collapse Approximation

We use the spherical collapse (SC) approximation to derive expressions for the smoothed redshift-space probability distribution function (PDF), as well as the $p$-order hierarchical amplitudes $S_p$, in both real and redshift space. We compare our results with numerical simulations, focusing on the $\Omega=1$ standard CDM model, where redshift distortions are strongest. We find good agreement between the SC predictions and the numerical PDF in real space even for \sigma_L \simgt 1, where $\sigma_L$ is the linearly-evolved rms fluctuation on the smoothing scale. In redshift space, reasonable agreement is possible only for \sigma_L \simlt 0.4. Numerical simulations also yield a simple empirical relation between the real-space PDF and redshift-space PDF: we find that for \sigma \simlt 1, the redshift space PDF, P[\delta_z], is, to a good approximation, a simple rescaling of the real space PDF, P[\delta], i.e., P[\delta/\sigma] d[\delta/\sigma] = P[\delta_z/\sigma_z] d[\delta_z/\sigma_z], where $\sigma$ and \sigma_z are the real-space and redshift-space rms fluctuations, respectively. This result applies well beyond the validity of linear perturbation theory, and it is a good fit for both the standard CDM model and the Lambda-CDM model. It breaks down for SCDM at $\sigma \approx 1$, but provides a good fit to the \Lambda-CDM models for $\sigma$ as large as 0.8.Comment: 9 pages, latex, 12 figures added (26 total), minor changes to conclusions, to appear in MNRA

Stochastic Biasing and Weakly Non-linear Evolution of Power Spectrum

Distribution of galaxies may be a biased tracer of the dark matter distribution and the relation between the galaxies and the total mass may be stochastic, non-linear and time-dependent. Since many observations of galaxy clustering will be done at high redshift, the time evolution of non-linear stochastic biasing would play a crucial role for the data analysis of the future sky surveys. In this paper, we develop the weakly non-linear analysis and attempt to clarify the non-linear feature of the stochastic biasing. We compute the one-loop correction of the power spectrum for the total mass, the galaxies and their cross correlation. Assuming the local functional form for the initial galaxy distribution, we investigate the time evolution of the biasing parameter and the correlation coefficient. On large scales, we first find that the time evolution of the biasing parameter could deviate from the linear prediction in presence of the initial skewness. However, the deviation can be reduced when the initial stochasticity exists. Next, we focus on the quasi-linear scales, where the non-linear growth of the total mass becomes important. It is recognized that the scale-dependence of the biasing dynamically appears and the initial stochasticity could affect the time evolution of the scale-dependence. The result is compared with the recent N-body simulation that the scale-dependence of the halo biasing can appear on relatively large scales and the biasing parameter takes the lower value on smaller scales. Qualitatively, our weakly non-linear results can explain this trend if the halo-mass biasing relation has the large scatter at high redshift.Comment: 29pages, 7 postscript figures, submitted to Ap

Skewness as a probe of non-Gaussian initial conditions

We compute the skewness of the matter distribution arising from non-linear evolution and from non-Gaussian initial perturbations. We apply our result to a very generic class of models with non-Gaussian initial conditions and we estimate analytically the ratio between the skewness due to non-linear clustering and the part due to the intrinsic non-Gaussianity of the models. We finally extend our estimates to higher moments.Comment: 5 pages, 2 ps-figs., accepted for publication in PRD, rapid com

Galaxy clustering constraints on deviations from Newtonian gravity at cosmological scales II: Perturbative and numerical analyses of power spectrum and bispectrum

We explore observational constraints on possible deviations from Newtonian gravity by means of large-scale clustering of galaxies. We measure the power spectrum and the bispectrum of Sloan Digital Sky Survey galaxies and compare the result with predictions in an empirical model of modified gravity. Our model assumes an additional Yukawa-like term with two parameters that characterize the amplitude and the length scale of the modified gravity. The model predictions are calculated using two methods; the second-order perturbation theory and direct N-body simulations. These methods allow us to study non-linear evolution of large-scale structure. Using the simulation results, we find that perturbation theory provides reliable estimates for the power spectrum and the bispectrum in the modified Newtonian model. We also construct mock galaxy catalogues from the simulations, and derive constraints on the amplitude and the length scale of deviations from Newtonian gravity. The resulting constraints from power spectrum are consistent with those obtained in our earlier work, indicating the validity of the previous empirical modeling of gravitational nonlinearity in the modified Newtonian model. If linear biasing is adopted, the bispectrum of the SDSS galaxies yields constraints very similar to those from the power spectrum. If we allow for the nonlinear biasing instead, we find that the ratio of the quadratic to linear biasing coefficients, b_2/b_1, should satisfy -0.4 < b_2/b_1<0.3 in the modified Newtonian model.Comment: 12 pages, 7 figure

Dark matter clustering: a simple renormalization group approach

I compute a renormalization group (RG) improvement to the standard beyond-linear-order Eulerian perturbation theory (PT) calculation of the power spectrum of large-scale density fluctuations in the Universe. At z=0, for a power spectrum matching current observations, lowest order RGPT appears to be as accurate as one can test using existing numerical simulation-calibrated fitting formulas out to at least k~=0.3 h/Mpc; although inaccuracy is guaranteed at some level by approximations in the calculation (which can be improved in the future). In contrast, standard PT breaks down virtually as soon as beyond-linear corrections become non-negligible, on scales even larger than k=0.1 h/Mpc. This extension in range of validity could substantially enhance the usefulness of PT for interpreting baryonic acoustic oscillation surveys aimed at probing dark energy, for example. I show that the predicted power spectrum converges at high k to a power law with index given by the fixed-point solution of the RG equation. I discuss many possible future directions for this line of work. The basic calculation of this paper should be easily understandable without any prior knowledge of RG methods, while a rich background of mathematical physics literature exists for the interested reader.Comment: much expanded explanation of basic calculatio

On the Viability of Bianchi Type VIIh Models with Dark Energy

We generalize the predictions for the CMB anisotropy patterns arising in Bianchi type VIIh universes to include a dark energy component. We consider these models in light of the result of Jaffe et al. (2005a,b) in which a correlation was found on large angular scales between the WMAP data and the anisotropy structure in a low density Bianchi universe. We find that by including a term Omega_L > 0, the same best-fit anisotropy pattern is reproduced by several combinations of cosmological parameters. This sub-set of models can then be further constrained by current observations that limit the values of various cosmological parameters. In particular, we consider the so-called geometric degeneracy in these parameters imposed by the peak structure of the WMAP data itself. Apparently, despite the additional freedom allowed by the dark energy component, the modified Bianchi models are ruled out at high significance.Comment: submitted to Ap

Constraints on Galaxy Bias, Matter Density, and Primordial Non--Gausianity from the PSCz Galaxy Redshift Survey

We compute the bispectrum for the \IRAS PSCz catalog and find that the galaxy distribution displays the characteristic signature of gravity. Assuming Gaussian initial conditions, we obtain galaxy biasing parameters $1/b_1=1.20^{+0.18}_{-0.19}$ and $b_2/b_1^2=-0.42\pm0.19$, with no sign of scale-dependent bias for $k\leq 0.3$ h/Mpc. These results impose stringent constraints on non-Gaussian initial conditions. For dimensional scaling models with $\chi^2_N$ statistics, we find N>49, which implies a constraint on primordial skewness $B_3<0.35$.Comment: 4 pages, 3 embedded figures, uses revtex style file, minor changes to reflect published versio

The architecture of EMC reveals a path for membrane protein insertion.

Funder: Boehringer Ingelheim Fonds; FundRef: http://dx.doi.org/10.13039/501100001645Funder: Naito Foundation; FundRef: http://dx.doi.org/10.13039/100007428Funder: Japanese Biochemical SocietyApproximately 25% of eukaryotic genes code for integral membrane proteins that are assembled at the endoplasmic reticulum. An abundant and widely conserved multi-protein complex termed EMC has been implicated in membrane protein biogenesis, but its mechanism of action is poorly understood. Here, we define the composition and architecture of human EMC using biochemical assays, crystallography of individual subunits, site-specific photocrosslinking, and cryo-EM reconstruction. Our results suggest that EMC's cytosolic domain contains a large, moderately hydrophobic vestibule that can bind a substrate's transmembrane domain (TMD). The cytosolic vestibule leads into a lumenally-sealed, lipid-exposed intramembrane groove large enough to accommodate a single substrate TMD. A gap between the cytosolic vestibule and intramembrane groove provides a potential path for substrate egress from EMC. These findings suggest how EMC facilitates energy-independent membrane insertion of TMDs, explain why only short lumenal domains are translocated by EMC, and constrain models of EMC's proposed chaperone function

Cosmic Strings and the String Dilaton

The existence of a dilaton (or moduli) with gravitational-strength coupling to matter imposes stringent constraints on the allowed energy scale of cosmic strings, $\eta$. In particular, superheavy gauge strings with $\eta \sim 10^{16} GeV$ are ruled out unless the dilaton mass m_{\phi} \gsim 100 TeV, while the currently popular value $m_{\phi} \sim 1 TeV$ imposes the bound \eta \lsim 3 \times 10^{11} GeV. Similar constraints are obtained for global topological defects. Some non-standard cosmological scenarios which can avoid these constraints are pointed out.Comment: 16 page