Delay-Coordinates Embeddings as a Data Mining Tool for Denoising Speech Signals

In this paper we utilize techniques from the theory of non-linear dynamical systems to define a notion of embedding threshold estimators. More specifically we use delay-coordinates embeddings of sets of coefficients of the measured signal (in some chosen frame) as a data mining tool to separate structures that are likely to be generated by signals belonging to some predetermined data set. We describe a particular variation of the embedding threshold estimator implemented in a windowed Fourier frame, and we apply it to speech signals heavily corrupted with the addition of several types of white noise. Our experimental work seems to suggest that, after training on the data sets of interest,these estimators perform well for a variety of white noise processes and noise intensity levels. The method is compared, for the case of Gaussian white noise, to a block thresholding estimator

Factors modulating the secretion of thyrotropin and other hormones of the thyroid axis.

The first portion of this paper is devoted to an overview of the normal function of the hypothalamo-pituitary-thyroid axis. This section emphasizes areas of current research interest and it identifies several sites and mechanisms that are potentially important interfaces with toxins or toxic mechanisms. We then describe an in vitro technique for the continuous superfusion of enzymatically dispersed pituitary cells; this approach is particularly valuable in studying the dynamics of the TSH responses to the factors known (or suspected) to regulate TSH secretion in vivo. Using this technique, we have found that 10(-5)M prostaglandin (PG)I2 stimulates TSH secretion without altering the response to TRH (10(-8)M), and that this stimulation is not due to its rapid conversion to 6-keto PGF1 alpha. In contrast PGs of the E series (PGE1 and PGE2, 10(-5)M) increase responsiveness to TRH but have no effect alone. We found no effects of any of the other prostanoids tested (PGs A2, B2, F1 alpha, F2 alpha, thromboxanes A2 and B2, and the endoperoxide analog, U-44069. Somatostain (10(-9)M inhibits TRH-induced TSH secretion, but does not alter the responsiveness to PGI2. These findings suggest that somatostatin blocks TSH secretion at a point that is functionally prior to the involvement of the PGs, and perhaps does so by blocking synthesis or limiting availability of selected PGs

Detecting periodicity in experimental data using linear modeling techniques

Fourier spectral estimates and, to a lesser extent, the autocorrelation function are the primary tools to detect periodicities in experimental data in the physical and biological sciences. We propose a new method which is more reliable than traditional techniques, and is able to make clear identification of periodic behavior when traditional techniques do not. This technique is based on an information theoretic reduction of linear (autoregressive) models so that only the essential features of an autoregressive model are retained. These models we call reduced autoregressive models (RARM). The essential features of reduced autoregressive models include any periodicity present in the data. We provide theoretical and numerical evidence from both experimental and artificial data, to demonstrate that this technique will reliably detect periodicities if and only if they are present in the data. There are strong information theoretic arguments to support the statement that RARM detects periodicities if they are present. Surrogate data techniques are used to ensure the converse. Furthermore, our calculations demonstrate that RARM is more robust, more accurate, and more sensitive, than traditional spectral techniques.Comment: 10 pages (revtex) and 6 figures. To appear in Phys Rev E. Modified styl

Chaos and localization in the wavefunctions of complex atoms NdI, PmI and SmI

Wavefunctions of complex lanthanide atoms NdI, PmI and SmI, obtained via multi-configuration Dirac-Fock method, are analyzed for density of states in terms of partial densities, strength functions ($F_k(E)$), number of principal components ($\xi_2(E)$) and occupancies (\lan n_\alpha \ran^E) of single particle orbits using embedded Gaussian orthogonal ensemble of one plus two-body random matrix ensembles [EGOE(1+2)]. It is seen that density of states are in general multi-modal, $F_k(E)$'s exhibit variations as function of the basis states energy and $\xi_2(E)$'s show structures arising from localized states. The sources of these departures from EGOE(1+2) are investigated by examining the partial densities, correlations between $F_k(E)$, $\xi_2(E)$ and \lan n_\alpha \ran^E and also by studying the structure of the Hamiltonian matrices. These studies point out the operation of EGOE(1+2) but at the same time suggest that weak admixing between well separated configurations should be incorporated into EGOE(1+2) for more quantitative description of chaos and localization in NdI, PmI and SmI.Comment: There are 9 figure

Zone-plate focusing of Bose-Einstein condensates for atom optics and erasable high-speed lithography of quantum electronic components

We show that Fresnel zone plates, fabricated in a solid surface, can sharply focus atomic Bose-Einstein condensates that quantum reflect from the surface or pass through the etched holes. The focusing process compresses the condensate by orders of magnitude despite inter-atomic repulsion. Crucially, the focusing dynamics are insensitive to quantum fluctuations of the atom cloud and largely preserve the condensates' coherence, suggesting applications in passive atom-optical elements, for example zone plate lenses that focus atomic matter waves and light at the same point to strengthen their interaction. We explore transmission zone-plate focusing of alkali atoms as a route to erasable and scalable lithography of quantum electronic components in two-dimensional electron gases embedded in semiconductor nanostructures. To do this, we calculate the density profile of a two-dimensional electron gas immediately below a patch of alkali atoms deposited on the surface of the nanostructure by zone-plate focusing. Our results reveal that surface-induced polarization of only a few thousand adsorbed atoms can locally deplete the electron gas. We show that, as a result, the focused deposition of alkali atoms by existing zone plates can create quantum electronic components on the 50 nm scale, comparable to that attainable by ion beam implantation but with minimal damage to either the nanostructure or electron gas.Comment: 13 pages, 7 figure

Towards precision medicine for pain: diagnostic biomarkers and repurposed drugs

We endeavored to identify objective blood biomarkers for pain, a subjective sensation with a biological basis, using a stepwise discovery, prioritization, validation, and testing in independent cohorts design. We studied psychiatric patients, a high risk group for co-morbid pain disorders and increased perception of pain. For discovery, we used a powerful within-subject longitudinal design. We were successful in identifying blood gene expression biomarkers that were predictive of pain state, and of future emergency department (ED) visits for pain, more so when personalized by gender and diagnosis. MFAP3, which had no prior evidence in the literature for involvement in pain, had the most robust empirical evidence from our discovery and validation steps, and was a strong predictor for pain in the independent cohorts, particularly in females and males with PTSD. Other biomarkers with best overall convergent functional evidence for involvement in pain were GNG7, CNTN1, LY9, CCDC144B, and GBP1. Some of the individual biomarkers identified are targets of existing drugs. Moreover, the biomarker gene expression signatures were used for bioinformatic drug repurposing analyses, yielding leads for possible new drug candidates such as SC-560 (an NSAID), and amoxapine (an antidepressant), as well as natural compounds such as pyridoxine (vitamin B6), cyanocobalamin (vitamin B12), and apigenin (a plant flavonoid). Our work may help mitigate the diagnostic and treatment dilemmas that have contributed to the current opioid epidemic

Case studies to enhance graduate employability: Indigenous employment and supports

This is one in a series of case studies to enhance graduate employability. This case study on the context of Indigenous employment and supports is based on interviews and focus groups with 14 people across the stakeholder groups of employed graduates, students in internships, educators,career development professionals and employers from six different universities

Theory of Crystalline Electric Field and Kondo Effect in Pr Skutterudites

Possible Kondo effect in Pr skutterudite is studied with attention to characteristic features of low-lying crystalline electric field (CEF) levels and the conduction band. A mechanism for the small CEF splitting between a singlet and a triplet is proposed as combination of the point-charge interaction and hybridization of 4f with ligand p states. Provided 4f^3 configurations dominate over 4f^1 as intermediate states, p-f hybridization favors the triplet, while point-charge interaction favors the singlet. For realistic parameters for hybridization as well as 4f^1 and 4f^3 levels, these singlet and triplet can form a nearly degenerate pseudo-quartet. It is found that one of two spin 1/2 objects composing the pseudo-quartet has a ferromagnetic exchange, while the other has an antiferromagnetic exchange with conduction electrons. The magnitude of each effective exchange depends strongly on a parameter characterizing the triplet wave function under the T_h symmetry. It is argued that differences of this parameter among Pr skutterdudites are responsible for the apparent diversity of their physical properties. Numerical renormalization group is used to derive the renormalization flows going toward singlet, doublet, triplet or quaret according to the CEF splitting and exchange interactions.Comment: 19 pages, 6 figures, to be published in Special Invited Section (Kondo Effect) of Journal of Physical Society of Japa

Analytic Treatment of Positronium Spin Splittings in Light-Front QED

We study the QED bound-state problem in a light-front hamiltonian approach. Starting with a bare cutoff QED Hamiltonian, $H_{_{B}}$, with matrix elements between free states of drastically different energies removed, we perform a similarity transformation that removes the matrix elements between free states with energy differences between the bare cutoff, $\Lambda$, and effective cutoff, \lam (\lam < \Lam). This generates effective interactions in the renormalized Hamiltonian, $H_{_{R}}$. These effective interactions are derived to order $\alpha$ in this work, with $\alpha \ll 1$. $H_{_{R}}$ is renormalized by requiring it to satisfy coupling coherence. A nonrelativistic limit of the theory is taken, and the resulting Hamiltonian is studied using bound-state perturbation theory (BSPT). The effective cutoff, \lam^2, is fixed, and the limit, 0 \longleftarrow m^2 \alpha^2\ll \lam^2 \ll m^2 \alpha \longrightarrow \infty, is taken. This upper bound on \lam^2 places the effects of low-energy (energy transfer below \lam) emission in the effective interactions in the $| e {\overline e} >$ sector. This lower bound on \lam^2 insures that the nonperturbative scale of interest is not removed by the similarity transformation. As an explicit example of the general formalism introduced, we show that the Hamiltonian renormalized to $O(\alpha)$ reproduces the exact spectrum of spin splittings, with degeneracies dictated by rotational symmetry, for the ground state through $O(\alpha^4)$. The entire calculation is performed analytically, and gives the well known singlet-triplet ground state spin splitting of positronium, $7/6 \alpha^2 Ryd$. We discuss remaining corrections other than the spin splittings and how they can be treated in calculating the spectrum with higher precision.Comment: 46 pages, latex, 3 Postscript figures included, section on remaining corrections added, title changed, error in older version corrected, cutoff placed in a windo

Trapping of ultra-cold atoms with the magnetic field of vortices in a thin film superconducting micro-structure

We store and control ultra-cold atoms in a new type of trap using magnetic fields of vortices in a high temperature superconducting micro-structure. This is the first time ultra-cold atoms have been trapped in the field of magnetic flux quanta. We generate the attractive trapping potential for the atoms by combining the magnetic field of a superconductor in the remanent state with external homogeneous magnetic fields. We show the control of crucial atom trap characteristics such as an efficient intrinsic loading mechanism, spatial positioning of the trapped atoms and the vortex density in the superconductor. The measured trap characteristics are in good agreement with our numerical simulations.Comment: 4pages, comments are welcom