Production of single-domain magnetite throughout life by sockeye salmon, Oncorhynchus nerka

Although single-domain particles of biogenic magnetite have been found in different species of pelagic fishes, nothing is known about when it is synthesized, or about whether the time during life when it is produced is correlated with the development of responses to magnetic field stimuli. We have investigated production of biogenic magnetite suitable for use in magnetoreception in different life stages of the sockeye salmon, Oncorhynchus nerka (Walbaum). Sockeye salmon were chosen because responses in orientation arenas to magnetic field stimuli have been demonstrated in both fry and smolt stages of this species. We found significant quantities of single-domain magnetite in connective tissue from the ethmoid region of the skull of adult (4-year-old) sockeye salmon. The ontogenetic study revealed an orderly increase in the amount of magnetic material in the same region of the skull but not in other tissues of sockeye salmon fry, yearlings and smolts. The physical properties of this material closely matched those of magnetite particles extracted from the ethmoid tissue of the adult fish. We suggest that single-domain magnetite particles suitable for use in magnetoreception are produced throughout life in the ethmoid region of the skull in sockeye salmon. Based on theoretical calculations, we conclude that there are enough particles present in the skulls of the fry to mediate their responses to magnetic field direction. By the smolt stage, the amount of magnetite present in the front of the skull is sufficient to provide the fish with a magnetoreceptor capable of detecting small changes in the intensity of the geomagnetic field. Other tissues of the salmon, such as the eye and skin, often contained ferromagnetic material, although the magnetizations of these tissues were usually more variable than in the ethmoid tissue. These deposits of unidentified magnetic material, some of which may be magnetite, appear almost exclusively in adults and so would not be useful in magnetoreception by young fish. We suggest that tissue from within the ethmoid region of the skull in pelagic fishes is the only site yet identified where magnetite suitable for use in magnetoreception is concentrated

Inexact Newton Dogleg Methods

The dogleg method is a classical trust-region technique for globalizing Newton\u27s method. While it is widely used in optimization, including large-scale optimization via truncated-Newton approaches, its implementation in general inexact Newton methods for systems of nonlinear equations can be problematic. In this paper, we first outline a very general dogleg method suitable for the general inexact Newton context and provide a global convergence analysis for it. We then discuss certain issues that may arise with the standard dogleg implementational strategy and propose modified strategies that address them. Newton-Krylov methods have provided important motivation for this work, and we conclude with a report on numerical experiments involving a Newton-GMRES dogleg method applied to benchmark CFD problems

Event Horizons in Numerical Relativity I: Methods and Tests

This is the first paper in a series on event horizons in numerical relativity. In this paper we present methods for obtaining the location of an event horizon in a numerically generated spacetime. The location of an event horizon is determined based on two key ideas: (1) integrating backward in time, and (2) integrating the whole horizon surface. The accuracy and efficiency of the methods are examined with various sample spacetimes, including both analytic (Schwarzschild and Kerr) and numerically generated black holes. The numerically evolved spacetimes contain highly distorted black holes, rotating black holes, and colliding black holes. In all cases studied, our methods can find event horizons to within a very small fraction of a grid zone.Comment: 22 pages, LaTeX with RevTeX 3.0 macros, 20 uuencoded gz-compressed postscript figures. Also available at http://jean-luc.ncsa.uiuc.edu/Papers/ Submitted to Physical Review

The size-brightness correspondence:evidence for crosstalk among aligned conceptual feature dimensions

The same core set of cross-sensory correspondences connecting stimulus features across different sensory channels are observed regardless of the modality of the stimulus with which the correspondences are probed. This observation suggests that correspondences involve modality-independent representations of aligned conceptual feature dimensions, and predicts a size-brightness correspondence, in which smaller is aligned with brighter. This suggestion accommodates cross-sensory congruity effects where contrasting feature values are specified verbally rather than perceptually (e.g., where the words WHITE and BLACK interact with the classification of high and low pitch sounds). Experiment 1 brings these two issues together in assessing a conceptual basis for correspondences. The names of bright/white and dark/black substances were presented in a speeded brightness classification task in which the two alternative response keys differed in size. A size-brightness congruity effect was confirmed, with substance names classified more quickly when the relative size of the response key needing to be pressed was congruent with the brightness of the named substance (e.g., when yoghurt was classified as a bright substance by pressing the smaller of two keys). Experiment 2 assesses the proposed conceptual basis for this congruity effect by requiring the same named substances to be classified according to their edibility (with all of the bright/dark substances having been selected for their edibility/inedibility, respectively). The predicted absence of a size-brightness congruity effect, along with other aspects of the results, supports the proposed conceptual basis for correspondences and speaks against accounts in which modality-specific perceptuomotor representations are entirely responsible for correspondence-induced congruity effects

Disparity, diversity, and duplications in the Caryophyllales

Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/141874/1/nph14772_am.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/141874/2/nph14772.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/141874/3/nph14772-sup-0001-SupInfo.pd

Acetaminophen Combinations Protect Against Iron-Induced Cardiac Damage in Gerbils

This study tested if acetaminophen, N-methyl-D-glucamine dithiocarbamate (NMGDTC), deferoxamine, and combinations of these agents reduce excess iron content, prevent iron-induced pathology, reduce cardiac arrhythmias, and reduce mortality in iron-overloaded gerbils. Eight groups of 16 gerbils received iron dextran injections (ferric hydroxide dextran complex, 120 mg/kg, ip) or saline solution (controls) twice/wk for 8 wk. The 8 groups were treated every Monday, Wednesday, and Friday with one of the following: saline control, acetaminophen, 150 mg/kg, ip), acetaminophen (150 mg/kg, po), deferoxamine, 83 mg/kg, ip), NMGDTC (200 mg/kg, ip), or combinations of acetaminophen (75 mg/kg) with deferoxamine (42 mg/kg, each ip, separately) or acetaminophen (75 mg/kg) with NMGDTC (100 mg/kg, each ip, separately). The treatments were given 4 hr after each iron injection on days when both iron administration and treatment occurred during iron overloading (8 wk) and were continued 4 wk thereafter. Echocardiography (ECHO) was used to evaluate iron-induced cardiac changes and detect arrhythmias. Acetaminophen and NMGDTC, or combinations thereof, reduced cardiac and hepatic excess iron content as measured by inductively coupled plasma atomic emission spectrometry (ICP-AES). Acetaminophen was effective whether administered po or ip. Acetaminophen treatment had a positive inotropic effect on cardiac function. Acetaminophen-deferoxamine combination conferred equal cardioprotection as acetaminophen or deferoxamine alone, was equally able to remove hepatic iron, and was superior to either acetaminophen or deferoxamine in removing cardiac iron from iron-overloaded gerbils. Acetaminophen-NMGDTC combination was also effective in removing cardiac and hepatic iron and protecting against iron-induced cardiac damage. ECHO evaluation of iron-overloaded, untreated gerbils demonstrated a high incidence of cardiac arrhythmias, usually PVCs (10/16 = 63%), and mortality prior to completion of the experiment (4/16 = 25%). All treatments except deferoxamine, alone, reduced the incidence of cardiac arrhythmias and deaths. All treatments reduced iron-induced increases in hepatic and cardiac weights. This study demonstrates injection alternates that are equally or more effective than deferoxamine injections and shows oral acetaminophen to be effective in treatment of iron-overload and associated cardiac complications

A Cure for HIV Infection: "Not in My Lifetime" or "Just Around the Corner"?

With the advent and stunning success of combination antiretroviral therapy (ART) to prolong and improve quality of life for persons with HIV infection, HIV research has been afforded the opportunity to pivot towards studies aimed at finding "a cure." The mere idea that cure of HIV might be possible has energized researchers and the community towards achieving this goal. Funding agencies, both governmental and private, have targeted HIV cure as a high priority; many in the field have responded to these initiatives and the cure research agenda is robust. In this "salon" two editors of Pathogens and Immunity, Michael Lederman and Daniel Douek ask whether curing HIV is a realistic, scalable objective. We start with an overview perspective and have asked a number of prominent HIV researchers to add to the discussion

CCR5AS lncRNA variation differentially regulates CCR5, influencing HIV disease outcome.

Multiple genome-wide studies have identified associations between outcome of human immunodeficiency virus (HIV) infection and polymorphisms in and around the gene encoding the HIV co-receptor CCR5, but the functional basis for the strongest of these associations, rs1015164A/G, is unknown. We found that rs1015164 marks variation in an activating transcription factor 1 binding site that controls expression of the antisense long noncoding RNA (lncRNA) CCR5AS. Knockdown or enhancement of CCR5AS expression resulted in a corresponding change in CCR5 expression on CD4+ T cells. CCR5AS interfered with interactions between the RNA-binding protein Raly and the CCR5 3' untranslated region, protecting CCR5 messenger RNA from Raly-mediated degradation. Reduction in CCR5 expression through inhibition of CCR5AS diminished infection of CD4+ T cells with CCR5-tropic HIV in vitro. These data represent a rare determination of the functional importance of a genome-wide disease association where expression of a lncRNA affects HIV infection and disease progression