Evaluation of a Pound Net Leader Designed to Reduce Sea Turtle Bycatch

Offshore pound net leaders in the southern portion of Chesapeake Bay in Virginia waters were documented to incidentally take protected loggerhead, Caretta caretta, and Kemp’s ridley, Lepidochelys kempii, sea turtles. Because of these losses, NOAA’s National Marine Fisheries Service (NMFS) in 2004 closed the area to offshore pound net leaders annually from 6 May to 15 July and initiated a study of an experimental leader design that replaced the top two-thirds of the traditional mesh panel leader with vertical ropes (0.95 cm) spaced 61 cm apart. This experimental leader was tested on four pound net sites on the eastern shore of Chesapeake Bay in 2004 and 2005. During the 2 trial periods, 21 loggerhead and Kemp’s ridley sea turtles were found interacting with the control leader and 1 leatherback turtle, Dermochelys coriacea, was found interacting with the experimental leader. Results of a negative binomial regression analysis comparing the two leader designs found the experimental leader significantly reduced sea turtle interactions (p=0.03). Finfish were sampled from the pound nets in the study to assess finfish catch performance differences between the two leader designs. Although the conclusions from this element of the experiment are not robust, paired t-test and Wilcoxon signed rank test results determined no significant harvest weight difference between the two leaders. Kolmogorov-Smirnov tests did not reveal any substantive size selectivity differences between the two leaders

New State Record and Notable Range Extension for \u3ci\u3eLibellula Semifasciata\u3c/i\u3e (Odonata: Libellulidae)

The painted skimmer, Libellula semifasciata Burmeister (Odonata: Libellulidae), is an eastern species of dragonfly that has never been documented in Iowa. In this note we report two observations and the collection of a voucher for this species in southeast Iowa in the last three years. Based on other records of this species, including those from neighboring states and more northerly latitudes, we propose that these observations are evidence of a range extension

Nature Versus Nurture: Luminous Blue Variable Nebulae in and near Massive Stellar Clusters at the Galactic Center

Three Luminous Blue Variables (LBVs) are located in and near the Quintuplet Cluster at the Galactic Center: the Pistol star, G0.120-0.048, and qF362. We present imaging at 19, 25, 31, and 37 {\mu}m of the region containing these three LBVs, obtained with SOFIA using FORCAST. We argue that the Pistol and G0.120-0.048 are identical ``twins" that exhibit contrasting nebulae due to the external influence of their different environments. Our images reveal the asymmetric, compressed shell of hot dust surrounding the Pistol Star and provide the first detection of the thermal emission from the symmetric, hot dust envelope surrounding G0.120-0.048. Dust and gas composing the Pistol nebula are primarily heated and ionized by the nearby Quintuplet Cluster stars. The northern region of the Pistol nebula is decelerated due to the interaction with the high-velocity (2000 km/s) winds from adjacent Wolf-Rayet Carbon (WC) stars. With the DustEM code we determine that the Pistol nebula is composed of a distribution of very small, transiently-heated grains (10-~35 {\AA}) and that it exhibits a gradient of decreasing grain size from the south to the north due to differential sputtering by the winds from the WC stars. Dust in the G0.120-0.048 nebula is primarily heated by the central star; however, the nebular gas is ionized externally by the Arches Cluster. Unlike the Pistol nebula, the G0.120-0.048 nebula is freely expanding into the surrounding medium. Given independent dust and gas mass estimates we find that the Pistol and G0.120-0.048 nebulae exhibit similar gas-to-dust mass ratios of ~310 and ~290, respectively. Both nebulae share identical size scales (~ 0.7 pc) which suggests that they have similar dynamical timescales of ~10^5 yrs, assuming a shell expansion velocity of v_exp 60 km/s.Comment: 18 pages, 7 figures, accepted to Ap

Hox, Wnt, and the evolution of the primary body axis: insights from the early-divergent phyla

The subkingdom Bilateria encompasses the overwhelming majority of animals, including all but four early-branching phyla: Porifera, Ctenophora, Placozoa, and Cnidaria. On average, these early-branching phyla have fewer cell types, tissues, and organs, and are considered to be significantly less specialized along their primary body axis. As such, they present an attractive outgroup from which to investigate how evolutionary changes in the genetic toolkit may have contributed to the emergence of the complex animal body plans of the Bilateria. This review offers an up-to-date glimpse of genome-scale comparisons between bilaterians and these early-diverging taxa. Specifically, we examine these data in the context of how they may explain the evolutionary development of primary body axes and axial symmetry across the Metazoa. Next, we re-evaluate the validity and evolutionary genomic relevance of the zootype hypothesis, which defines an animal by a specific spatial pattern of gene expression. Finally, we extend the hypothesis that Wnt genes may be the earliest primary body axis patterning mechanism by suggesting that Hox genes were co-opted into this patterning network prior to the last common ancestor of cnidarians and bilaterians

Old supernova dust factory revealed at the Galactic center

Dust formation in supernova ejecta is currently the leading candidate to explain the large quantities of dust observed in the distant, early Universe. However, it is unclear whether the ejecta-formed dust can survive the hot interior of the supernova remnant (SNR). We present infrared observations of ~0.02 $M_\odot$ of warm (~100 K) dust seen near the center of the ~10,000 yr-old Sgr A East SNR at the Galactic center. Our findings signify the detection of dust within an older SNR that is expanding into a relatively dense surrounding medium ($n_e$ ~ 100 $\mathrm{cm}^{-3}$) and has survived the passage of the reverse shock. The results suggest that supernovae may indeed be the dominant dust production mechanism in the dense environment of early Universe galaxies.Comment: 25 pages, 5 figures. Includes supplementary materials. Published Online March 19 2015 on Science Expres

IMRT QA using machine learning: A multi-institutional validation.

PurposeTo validate a machine learning approach to Virtual intensity-modulated radiation therapy (IMRT) quality assurance (QA) for accurately predicting gamma passing rates using different measurement approaches at different institutions.MethodsA Virtual IMRT QA framework was previously developed using a machine learning algorithm based on 498 IMRT plans, in which QA measurements were performed using diode-array detectors and a 3%local/3 mm with 10% threshold at Institution 1. An independent set of 139 IMRT measurements from a different institution, Institution 2, with QA data based on portal dosimetry using the same gamma index, was used to test the mathematical framework. Only pixels with ≥10% of the maximum calibrated units (CU) or dose were included in the comparison. Plans were characterized by 90 different complexity metrics. A weighted poison regression with Lasso regularization was trained to predict passing rates using the complexity metrics as input.ResultsThe methodology predicted passing rates within 3% accuracy for all composite plans measured using diode-array detectors at Institution 1, and within 3.5% for 120 of 139 plans using portal dosimetry measurements performed on a per-beam basis at Institution 2. The remaining measurements (19) had large areas of low CU, where portal dosimetry has a larger disagreement with the calculated dose and as such, the failure was expected. These beams need further modeling in the treatment planning system to correct the under-response in low-dose regions. Important features selected by Lasso to predict gamma passing rates were as follows: complete irradiated area outline (CIAO), jaw position, fraction of MLC leafs with gaps smaller than 20 or 5 mm, fraction of area receiving less than 50% of the total CU, fraction of the area receiving dose from penumbra, weighted average irregularity factor, and duty cycle.ConclusionsWe have demonstrated that Virtual IMRT QA can predict passing rates using different measurement techniques and across multiple institutions. Prediction of QA passing rates can have profound implications on the current IMRT process

The influence of increased contact rate among raccoons on a nematode of public, and wildlife health concern, Baylisascar [abstract]

Abstract only availableNatural and anthropogenic fluctuations in resource availability can alter the behavioral ecology and population dynamics of wildlife. This may have unintended consequences to wildlife disease ecology, as theoretical models predict parasite transmission is highly dependent on contact rate and density of individuals within a population. We examined the influence of alterations in the behavioral ecology of hosts on the nematode Baylisascaris procyonis of raccoons, that can infect and cause disease and mortality in a variety of animals, including humans. Twelve populations of free-ranging raccoons were monitored for three years. After one year of baseline data collection, we experimentally altered the contact rate and resource availability of randomly selected populations via dispersed or clumped food distributions. Rates of contact were measured via remote cameras and host characteristics (age, sex) and infection of B. procyonis in individuals were assessed via live-capture and standard sugar flotation techniques. Prevalence of B. procyonis averaged 6.5% at three control sites (no food added; n=186 individuals), 14.3% at four sites had dispersed food additions (n=42), and 21% at five sites with clumped food additions that aggregated raccoons (n=81). The 95% confidence interval of prevalence at experimental sites did not overlap with values observed at control sites. Data collected prior to manipulation indicated that differences observed during the experiment were not due to naturally occurring differences at those sites; prevalence of B. procyonis averaged 2.3% at sites assigned to the control category, 5.4% at sites assigned to the dispersed food category, and 4.1% at sites assigned to the experimental category. These results support the hypothesis that increased rates of contact can increase transmission of parasites such as B. procyonis, and emphasize the potentially important role of anthropogenic activity in wildlife disease ecology when dealing with species that can take advantage of such resources and tolerate aggregations of conspecifics.NSF Undergraduate Mentoring in Environmental Biolog

The influence of increased contact rate among raccoons on a directly transmitted nematode, Baylisascaris procyonis [abstract]

Abstract only availableHuman encroachment on wildlife habitat can result in anthropogenic food sources that aggregate raccoons. This may have unintended consequences to wildlife and human health, as theoretical models predict parasite transmission is highly dependent on the contact rate and density of individuals within a population. We examined the influence of contact rate on a directly transmitted nematode (Baylisascaris procyonis) of raccoons that can infect and cause disease and mortality in a wide range of accidental hosts, including humans. Twelve populations of free-ranging raccoons were monitored for three years. After one year of baseline data collection, we experimentally altered the contact rate and resource availability of randomly selected populations via dispersed or clumped food distributions. Prior to manipulation, prevalence of B. procyonis averaged 9% across all sites (range 0-35%). During the experiment, prevalence of B. procyonis averaged 4% at control sites (no food added), 18% at sites that had dispersed food additions (which did not increase contact), and 22% at sites with clumped food additions that aggregated raccoons. Data collected prior to the experiment indicated that sites that were assigned to the dispersed food treatment had a naturally-occurring higher prevalence (13%) than the sites assigned to the control (5%) and aggregation treatment (9%), indicating that the high values observed in the dispersed food sites during the experiment may be due to site-specific differences rather than the addition of dispersed food. These results support the hypothesis that increased rates of contact can increase transmission of directly transmitted parasites such as B. procyonis, and emphasize the potentially important role of anthropogenic activity in the ecology of diseases when dealing with wildlife species that can take advantage of such resources and tolerate large aggregations of conspecifics

A Spitzer Five-Band Analysis of the Jupiter-Sized Planet TrES-1

With an equilibrium temperature of 1200 K, TrES-1 is one of the coolest hot Jupiters observed by {\Spitzer}. It was also the first planet discovered by any transit survey and one of the first exoplanets from which thermal emission was directly observed. We analyzed all {\Spitzer} eclipse and transit data for TrES-1 and obtained its eclipse depths and brightness temperatures in the 3.6 {\micron} (0.083 % {\pm} 0.024 %, 1270 {\pm} 110 K), 4.5 {\micron} (0.094 % {\pm} 0.024 %, 1126 {\pm} 90 K), 5.8 {\micron} (0.162 % {\pm} 0.042 %, 1205 {\pm} 130 K), 8.0 {\micron} (0.213 % {\pm} 0.042 %, 1190 {\pm} 130 K), and 16 {\micron} (0.33 % {\pm} 0.12 %, 1270 {\pm} 310 K) bands. The eclipse depths can be explained, within 1$\sigma$ errors, by a standard atmospheric model with solar abundance composition in chemical equilibrium, with or without a thermal inversion. The combined analysis of the transit, eclipse, and radial-velocity ephemerides gives an eccentricity $e = 0.033^{+0.015}_{-0.031}$, consistent with a circular orbit. Since TrES-1's eclipses have low signal-to-noise ratios, we implemented optimal photometry and differential-evolution Markov-chain Monte Carlo (MCMC) algorithms in our Photometry for Orbits, Eclipses, and Transits (POET) pipeline. Benefits include higher photometric precision and \sim10 times faster MCMC convergence, with better exploration of the phase space and no manual parameter tuning.Comment: 17 pages, Accepted for publication in Ap

Widespread Selection Across Coding and Noncoding DNA in the Pea Aphid Genome

Genome-wide patterns of diversity and selection are critical measures for understanding how evolution has shaped the genome. Yet, these population genomic estimates are available for only a limited number of model organisms. Here we focus on the population genomics of the pea aphid (Acyrthosiphon pisum). The pea aphid is an emerging model system that exhibits a range of intriguing biological traits not present in classic model systems. We performed low-coverage genome resequencing of 21 clonal pea aphid lines collected from alfalfa host plants in North America to characterize genome-wide patterns of diversity and selection. We observed an excess of low-frequency polymorphisms throughout coding and noncoding DNA, which we suggest is the result of a founding event and subsequent population expansion in North America. Most gene regions showed lower levels of Tajima’s D than synonymous sites, suggesting that the majority of the genome is not evolving neutrally but rather exhibits significant constraint. Furthermore, we used the pea aphid’s unique manner of X-chromosome inheritance to assign genomic scaffolds to either autosomes or the X chromosome. Comparing autosomal vs. X-linked sequence variation, we discovered that autosomal genes show an excess of low frequency variants indicating that purifying selection acts more efficiently on the X chromosome. Overall, our results provide a critical first step in characterizing the genetic diversity and evolutionary pressures on an aphid genome