A pencil distributed finite difference code for strongly turbulent wall-bounded flows

We present a numerical scheme geared for high performance computation of wall-bounded turbulent flows. The number of all-to-all communications is decreased to only six instances by using a two-dimensional (pencil) domain decomposition and utilizing the favourable scaling of the CFL time-step constraint as compared to the diffusive time-step constraint. As the CFL condition is more restrictive at high driving, implicit time integration of the viscous terms in the wall-parallel directions is no longer required. This avoids the communication of non-local information to a process for the computation of implicit derivatives in these directions. We explain in detail the numerical scheme used for the integration of the equations, and the underlying parallelization. The code is shown to have very good strong and weak scaling to at least 64K cores

Optical measurement of propeller blade deflections in a spin facility

A nonintrusive optical system for measuring propeller blade deflections has been used in the NASA Lewis dynamic spin facility. Deflection of points at the leading and trailing edges of a blade section can be obtained with a narrow light beam from a low power helium-neon laser. A system used to measure these deflections at three spanwise locations is described. Modifications required to operate the lasers in a near-vacuum environment are also discussed

Managing Birds and Controlling Aircraft in the Kennedy Airport–Jamaica Bay Wildlife Refuge Complex: The Need for Hard Data and Soft Opinions

During the 1980s, the exponential growth of laughing gull (Larus atricilla) colonies, from 15 to about 7600 nests in 1990, in the Jamaica Bay Wildlife Refuge and a correlated increase in the bird-strike rate at nearby John F. Kennedy International Airport (New York City) led to a controversy between wildlife and airport managers over the elimination of the colonies. In this paper, we review data to evaluate if: (1) the colonies have increased the level of risk to the flying public; (2) on-colony population control would reduce the presence of gulls, and subsequently bird strikes, at the airport; and (3) all on-airport management alternatives have been adequately implemented. Since 1979, most (2987, 87%) of the 3444 bird strikes (number of aircraft struck) were actually bird carcasses found near runways (cause of death unknown but assumed to be bird strikes by definition). Of the 457 pilot-reported strikes (mean = 23 ± 6 aircraft/yr, N= 20 years), 78 (17%) involved laughing gulls. Since a gull-shooting program was initiated on airport property in 1991, over 50,000 adult laughing gulls have been killed and the number of reported bird strikes involving laughing gulls has declined from 6.9 ± 2.9 (1983–1990) to 2.6 ± 1.3 (1991–1998) aircraft/yr; nongull reported bird strikes, however, have more than doubled (6.4 ± 2.6, 1983–1990; 14.9 ± 5.1, 1991–1998). We found no evidence to indicate that on-colony management would yield a reduction of bird strikes at Kennedy Airport. Dietary and mark–recapture studies suggest that 60%–90% of the laughing gulls collected on-airport were either failed breeders and/or nonbreeding birds. We argue that the Jamaica Bay laughing gull colonies, the only ones in New York State, should not be managed at least until all on-airport management alternatives have been properly implemented and demonstrated to be ineffective at reducing bird strikes, including habitat alterations and increasing the capability of the bird control unit to eliminate bird flocks on-airport using nonlethal bird dispersal techniques. Because the gull-shooting program may be resulting in a nonsustainable regional population of laughing gulls (\u3e30% decline), we also recommend that attempts be made to initiate an experimental colony elsewhere on Long Island to determine if colony relocation is a feasible management option

Gene expression analysis on small numbers of invasive cells collected by chemotaxis from primary mammary tumors of the mouse

BACKGROUND: cDNA microarrays have the potential to identify the genes involved in invasion and metastasis. However, when used with whole tumor tissue, the results average the expression patterns of different cell types. We have combined chemotaxis-based cell collection of the invasive subpopulation of cells within the primary tumor with array-based gene expression analysis to identify the genes necessary for the process of carcinoma cell invasion. RESULTS: Invasive cells were collected from live primary tumors using microneedles containing chemotactic growth factors to mimic chemotactic signals thought to be present in the primary tumor. When used with mammary tumors of rats and mice, carcinoma cells and macrophages constitute the invasive cell population. Microbeads conjugated with monoclonal anti-CD11b (Mac-1α) antibodies were used to separate macrophages from carcinoma cells. We utilized PCR-based cDNA amplification from small number of cells and compared it to the quality and complexity of conventionally generated cDNA to determine if amplified cDNA could be used with fidelity for array analysis of this cell population. These techniques showed a very high level of correlation indicating that the PCR based amplification technique yields a cDNA population that resembles, with high fidelity, the original template population present in the small number of cells used to prepare the cDNA for use with the chip. CONCLUSIONS: The specific collection of invasive cells from a primary tumor and the analysis of gene expression in these cells are is now possible. By further comparing the gene expression patterns of cells collected by invasion into microneedles with that of carcinoma cells obtained from the whole primary tumor, the blood, and whole metastatic tumors, genes that contribute to the invasive process in carcinoma cells may be identified

The connections of the insular VEN area in great apes: A histologically-guided ex vivo diffusion tractography study

We mapped the connections of the insular von Economo neuron (VEN) area in ex vivo brains of a bonobo, an orangutan and two gorillas with high angular resolution diffusion MRI imaging acquired in 36 h imaging sessions for each brain. The apes died of natural causes without neurological disorders. The localization of the insular VEN area was based on cresyl violet-stained histological sections from each brain that were coregistered with structural and diffusion images from the same individuals. Diffusion MRI tractography showed that the insular VEN area is connected with olfactory, gustatory, visual and other sensory systems, as well as systems for the mediation of appetite, reward, aversion and motivation. The insular VEN area in apes is most strongly connected with frontopolar cortex, which could support their capacity to choose voluntarily among alternative courses of action particularly in exploring for food resources. The frontopolar cortex may also support their capacity to take note of potential resources for harvesting in the future (prospective memory). All of these faculties may support insight and volitional choice when contemplating courses of action as opposed to rule-based decision-making

Anti-Truncation of Disks in Early-Type Barred Galaxies

The disks of spiral galaxies are commonly thought to be truncated: the radial surface brightness profile steepens sharply beyond a certain radius (3--5 inner-disk scale lengths). Here we present the radial brightness profiles of a number of barred S0--Sb galaxies with the opposite behavior: their outer profiles are distinctly shallower in slope than the main disk profile. We term these "anti-truncations"; they are found in at least 25% of a larger sample of barred S0--Sb galaxies. There are two distinct types of anti-truncations. About one-third show a fairly gradual transition and outer isophotes which are progressively rounder than the main disk isophotes, suggestive of a disk embedded within a more spheroidal outer zone -- either the outer extent of the bulge or a separate stellar halo. But the majority of the profiles have rather sharp surface-brightness transitions to the shallower, outer exponential profile and, crucially, outer isophotes which are not significantly rounder than the main disk; in the Sab--Sb galaxies, the outer isophotes include visible spiral arms. This suggests that the outer light is still part of the disk. A subset of these profiles are in galaxies with asymmetric outer isophotes (lopsided or one-armed spirals), suggesting that interactions may be responsible for at least some of the disklike anti-truncations.Comment: LaTeX, 5 pages, 4 EPS figures. To appear in Astrophysical Journal Letters. Minor typos fixed; proper acknowledgments adde