Control of flower development in Arabidopsis thaliana by APETALA1 and interacting genes

Mutations in the APETALA1 gene disturb two phases of flower development, flower meristem specification and floral organ specification. These effects become manifest as a partial conversion of flowers into inflorescence shoots and a disruption of sepal and petal development. We describe the changes in an allelic series of nine apetala1 mutants and show that the two functions of APETALA1 are separable. We have also studied the interaction between APETALA1 and other floral genes by examining the phenotypes of multiply mutant plants and by in situ hybridization using probes for several floral control genes. The results suggest that the products of APETALA1 and another gene, LEAFY, are required to ensure that primordia arising on the flanks of the inflorescence apex adopt a floral fate, as opposed to becoming an inflorescence shoot. APETALA1 and LEAFY have distinct as well as overlapping functions and they appear to reinforce each other's action. CAULIFLOWER is a newly discovered gene which positively regulates both APETALA1 and LEAFY expression. All functions of CAULIFLOWER are redundant with those of APETALA1. APETALA2 also has an early function in reinforcing the action of APETALA1 and LEAFY, especially if the activity of either is compromised by mutation. After the identity of a flower primordium is specified, APETALA1 interacts with APETALA2 in controlling the development of the outer two whorls of floral organs

A four-lidar view of Cirrus from the FIRE IFO: 27-28 October 1986

The four ground-based lidar systems that participated in the 1986 FIRE IFO were configured in a diamond-shaped array across central and southern Wisconsin. Data were generally collected in the zenith pointing mode, except for the Doppler lidar, which regularly operated in a scanning mode with intermittent zenith observations. As a component of the cirrus case study of 27 and 28 October 1986 selected for initial analysis, data collected by the remote sensor ensemble from 1600 (on the 27th) to 2400 UTC (on the 28th) is described and compared. In general, the cirrus studied on the 27th consisted of intermittent layers of thin and subvisual cirrus clouds. Particularly at Wausau, subvisual cirrus was detected from 11.0 to 11.5 km MSL, just below the tropopause. At lower levels, occasional cirrus clouds between approx. 8.0 to 9.5 km were detected from all ground sites. Preliminary analysis of the four-lidar dataset reveals the passage of surprisingly consistent cloud features across the experiment area. A variety of types and amounts of middle and high level clouds occurred, ranging from subvisual cirrus to deep cloud bands. It is expected that the ground-based lidar measurements from this case study, as well as the airborne observations, will provide an excellent data base for comparison to satellite observations

The conservation and evolutionary modularity of metabolism

A novel evolutionary analysis of metabolic networks across 26 taxa reveals a highly-conserved but flexible core of metabolic enzymes

The Modular Organization of Protein Interactions in Escherichia coli

Escherichia coli serves as an excellent model for the study of fundamental cellular processes such as metabolism, signalling and gene expression. Understanding the function and organization of proteins within these processes is an important step towards a ‘systems’ view of E. coli. Integrating experimental and computational interaction data, we present a reliable network of 3,989 functional interactions between 1,941 E. coli proteins (∼45% of its proteome). These were combined with a recently generated set of 3,888 high-quality physical interactions between 918 proteins and clustered to reveal 316 discrete modules. In addition to known protein complexes (e.g., RNA and DNA polymerases), we identified modules that represent biochemical pathways (e.g., nitrate regulation and cell wall biosynthesis) as well as batteries of functionally and evolutionarily related processes. To aid the interpretation of modular relationships, several case examples are presented, including both well characterized and novel biochemical systems. Together these data provide a global view of the modular organization of the E. coli proteome and yield unique insights into structural and evolutionary relationships in bacterial networks

PartiGeneDB—collating partial genomes

Owing to the high costs involved, only 28 eukaryotic genomes have been fully sequenced to date. On the other hand, an increasing number of projects have been initiated to generate survey sequence data for a large number of other eukaryotic organisms. For the most part, these data are poorly organized and difficult to analyse. Here, we present PartiGeneDB (http://www.partigenedb.org), a publicly available database resource, which collates and processes these sequence datasets on a species-specific basis to form non-redundant sets of gene objects—which we term partial genomes. Users may query the database to identify particular genes of interest either on the basis of sequence similarity or via the use of simple text searches for specific patterns of BLAST annotation. Alternatively, users can examine entire partial genome datasets on the basis of relative expression of gene objects or by the use of an interactive Java-based tool (SimiTri), which displays sequence similarity relationships for a large number of sequence objects in a single graphic. PartiGeneDB facilitates regular incremental updates of new sequence datasets associated with both new and exisitng species. PartiGeneDB currently contains the assembled partial genomes derived from 1.83 million sequences associated with 247 different eukaryotes

Medical bioremediation of age-related diseases

Catabolic insufficiency in humans leads to the gradual accumulation of a number of pathogenic compounds associated with age-related diseases, including atherosclerosis, Alzheimer's disease, and macular degeneration. Removal of these compounds is a widely researched therapeutic option, but the use of antibodies and endogenous human enzymes has failed to produce effective treatments, and may pose risks to cellular homeostasis. Another alternative is "medical bioremediation," the use of microbial enzymes to augment missing catabolic functions. The microbial genetic diversity in most natural environments provides a resource that can be mined for enzymes capable of degrading just about any energy-rich organic compound. This review discusses targets for biodegradation, the identification of candidate microbial enzymes, and enzyme-delivery methods

Codeless App Development: Evaluating A Cloud-Native Domain-Specific Functions Approach

Mobile applications play an important role in the economy today and there is an increasing trend for app enablement on multiple platforms. However, creating, distributing, and maintaining an application remain expert tasks. Even for software developers, the process can be error-prone and resource-consuming, especially when targeting different platforms simultaneously. Researchers have proposed several frameworks to facilitate cross-platform app development, but little attention has been paid to non-technical users. In this paper, we described the Flow framework, which takes the advantage of domain-specific languages to enable no-code specification for app modeling. The cloud-native coordination mechanism further supports non-technical users to execute, monitor, and maintain apps for any target platforms. User evaluations were conducted to assess the usability and user experience with the system. The results indicated that users can develop apps in Flow with ease, but the prototype could be optimized to reduce learning time and workload