Floods stress in lowland rice production: experiences of rice farmers in Kilombero and Lower-Rufiji floodplains, Tanzania

The resilience of rice production to floods is a crucial aspect of agricultural development in flood-prone regions. However, little is known about the farming practices and challenges of rice farmers in two river basins in Tanzania: Lower-Rufiji and Kilombero, where rice is the main crop grown. This study aimed to investigate the experiences of farmers in these two rice-growing floodplains regarding the impact of floods on lowland rice production and farmer livelihoods, and the strategies they use to cope with floods. The study used a mixed-methods approach that involved household surveys, key informant interviews, and transect walks to collect data from 180 rice farmers and 14 experts and community leaders. The data analysis revealed that floods were the dominant stressor affecting rice production, occurring mostly during the long rainy season and experienced by all farmers in both locations. Floods not only caused significant crop losses, especially in Lower-Rufiji where farmers reported losing between 75 and 100% of their yield in cases of extreme floods, but also made it difficult to establish and manage crops, leading to crop land abandonment. Floods also affected the livelihoods of rice farmers by forcing them to abandon, rent, or sell their farms. Coexistence of floods with other biotic and abiotic stresses such as crop diseases and droughts also limited the use of short maturing high yielding rice varieties. Farmers have adopted on-farm strategies such as adjusting planting schedules, using different varieties of rice, changing to other crops or activities after the floods to cope with floods, but these practices face numerous challenges. The study recommends the development of early warning systems, breeding for flood-tolerant rice varieties, introgression of tolerance traits to multiple stresses and improving crop establishment methods to enhance the resilience of farmers to floods and other extreme climate events

Insights into landforms and soils for explaining plague hosts-vectors interaction in Western Usambara Mountains, Tanzania

PhD. ThesisWestern Usambara Mountains in Lushoto District, Tanzania, are highly populated owing to favourable climatic conditions for production of both cash and food crops such as coffee, tea, maize, beans, potatoes and assorted fruits and vegetables. Some areas in the district are also potential as tourist destinations. However, clusters of villages in the district are reported to be hot-spots of plague recurrence that has caused deaths of thousands of people. Plague outbreaks in some villages of Lushoto District show a high frequency (on average, more than 1 year out of three) while other villages, very nearby (0.05) on burrow port orientation. The results showed that both soil depth and temperature encouraged burrow use in the high plague frequency landscape (p<0.05). Soil depth, dry soil consistence and subsoil relative humidity (RH (%) within 30 cm depth) significantly (p<0.05) could explain the burrow abundance in the medium plague frequency landscape. The use of burrows depended on the resistance of burrow to collapse, a characteristics which is dependent on the compaction of topsoil. However, dry subsoil consistence discouraged burrowing. Subsoil dry consistence had a significant (p<0.05) negative influence on burrow portal orientation in the medium plague frequency area, something attributed to compaction of the soils. It is concluded that soil physical and soil microclimate in the high plague frequency landscape encourage burrowing, a phenomenon correlating with the reported human plague contact risks. The information obtained from this study could be applied for surveillance, monitoring and control of rodent populations.Landscape-ecological Clarification of Bubonic Plague Distribution and Outbreaks in the Western Usambara Mountains, Tanzania (LEPUS) via VLIR own initiative projec

Insights into landforms and soils for explaining plague hosts-vectors interaction in Western Usambara Mountains, Tanzania

PhD. ThesisWestern Usambara Mountains in Lushoto District, Tanzania, are highly populated owing to favourable climatic conditions for production of both cash and food crops such as coffee, tea, maize, beans, potatoes and assorted fruits and vegetables. Some areas in the district are also potential as tourist destinations. However, clusters of villages in the district are reported to be hot-spots of plague recurrence that has caused deaths of thousands of people. Plague outbreaks in some villages of Lushoto District show a high frequency (on average, more than 1 year out of three) while other villages, very nearby (0.05) on burrow port orientation. The results showed that both soil depth and temperature encouraged burrow use in the high plague frequency landscape (p<0.05). Soil depth, dry soil consistence and subsoil relative humidity (RH (%) within 30 cm depth) significantly (p<0.05) could explain the burrow abundance in the medium plague frequency landscape. The use of burrows depended on the resistance of burrow to collapse, a characteristics which is dependent on the compaction of topsoil. However, dry subsoil consistence discouraged burrowing. Subsoil dry consistence had a significant (p<0.05) negative influence on burrow portal orientation in the medium plague frequency area, something attributed to compaction of the soils. It is concluded that soil physical and soil microclimate in the high plague frequency landscape encourage burrowing, a phenomenon correlating with the reported human plague contact risks. The information obtained from this study could be applied for surveillance, monitoring and control of rodent populations.Landscape-ecological Clarification of Bubonic Plague Distribution and Outbreaks in the Western Usambara Mountains, Tanzania (LEPUS) via VLIR own initiative projec

Predicting small mammal and flea abundance using landform and soil properties in a plague endemic area in Lushoto District, Tanzania

Small mammals particularly rodents, are considered the primary natural hosts of plague. Literature suggests that plague persistence in natural foci has a root cause in soils. The objective of this study was to investigate the relationship between on the one hand landforms and associated soil properties, and on the other hand small mammals and fleas in West Usambara Mountains in Tanzania, a plague endemic area. Standard field survey methods coupled with Geographical Information System (GIS) technique were used to examine landform and soils characteristics. Soil samples were analysed in the laboratory for physico-chemical properties. Small mammals were trapped on pre-established landform positions and identified to genus/species level. Fleas were removed from the trapped small mammals and counted. Exploration of landform and soil data was done using ArcGIS Toolbox functions and descriptive statistical analysis. The relationships between landforms, soils, small mammals and fleas were established by generalised linear regression model (GLM) operated in R statistics software. Results show that landforms and soils influence the abundance of small mammals and fleas and their spatial distribution. The abundance of small mammals and fleas increased with increase in elevation. Small mammal species richness also increases with elevation. A landform-soil model shows that available phosphorus, slope aspect and elevation were statistically significant predictors explaining richness and abundance of small mammals. Fleas’ abundance and spatial distribution were influenced by hill-shade, available phosphorus and base saturation. The study suggests that landforms and soils have a strong influence on the richness and evenness of small mammals and their fleas’ abundance hence could be used to explain plague dynamics in the areastatus: publishe

Predicting small mammal and flea abundance using landform and soil properties in a plague endemic area in Lushoto District, Tanzania

Small mammals particularly rodents, are considered the primary natural hosts of plague. Literature suggests that plague persistence in natural foci has a root cause in soils. The objective of this study was to investigate the relationship between on the one hand landforms and associated soil properties, and on the other hand small mammals and fleas in West Usambara Mountains in Tanzania, a plague endemic area. Standard field survey methods coupled with Geographical Information System (GIS) technique were used to examine landform and soils characteristics. Soil samples were analysed in the laboratory for physico-chemical properties. Small mammals were trapped on pre-established landform positions and identified to genus/species level. Fleas were removed from the trapped small mammals and counted. Exploration of landform and soil data was done using ArcGIS Toolbox functions and descriptive statistical analysis. The relationships between landforms, soils, small mammals and fleas were established by generalised linear regression model (GLM) operated in R statistics software. Results show that landforms and soils influence the abundance of small mammals and fleas and their spatial distribution. The abundance of small mammals and fleas increased with increase in elevation. Small mammal species richness also increases with elevation. A landform-soil model shows that available phosphorus, slope aspect and elevation were statistically significant predictors explaining richness and abundance of small mammals. Fleas’ abundance and spatial distribution were influenced by hill-shade, available phosphorus and base saturation. The study suggests that landforms and soils have a strong influence on the richness and evenness of small mammals and their fleas’ abundance hence could be used to explain plague dynamics in the area

Predicting small mammal and flea abundance using landform and soil properties in a plague endemic area in Lushoto District, Tanzania

Small mammals particularly rodents, are considered the primary natural hosts of plague. Literature suggests that plague persistence in natural foci has a root cause in soils. The objective of this study was to investigate the relationship between on the one hand landforms and associated soil properties, and on the other hand small mammals and fleas in West Usambara Mountains in Tanzania, a plague endemic area. Standard field survey methods coupled with Geographical Information System (GIS) technique were used to examine landform and soils characteristics. Soil samples were analysed in the laboratory for physico-chemical properties. Small mammals were trapped on pre-established landform positions and identified to genus/species level. Fleas were removed from the trapped small mammals and counted. Exploration of landform and soil data was done using ArcGIS Toolbox functions and descriptive statistical analysis. The relationships between landforms, soils, small mammals and fleas were established by generalised linear regression model (GLM) operated in R statistics software. Results show that landforms and soils influence the abundance of small mammals and fleas and their spatial distribution. The abundance of small mammals and fleas increased with increase in elevation. Small mammal species richness also increases with elevation. A landform-soil model shows that available phosphorus, slope aspect and elevation were statistically significant predictors explaining richness and abundance of small mammals. Fleas’ abundance and spatial distribution were influenced by hill-shade, available phosphorus and base saturation. The study suggests that landforms and soils have a strong influence on the richness and evenness of small mammals and their fleas’ abundance hence could be used to explain plague dynamics in the area

The effect of soil physical properties and soil microclimate on rodent burrows’ abundance and their characteristics in Western Usambara Mountains, Tanzania

The present study was carried out between September 2009 and June 2013 in Western Usambara Mountains plague focus with the aim of establishing the influence of selected soil physical properties and soil microclimate on rodent burrows’ abundance, portal orientation and use. Two landscapes with high and medium plague frequencies in Lokome and Lukozi villages were studied. In the two landscapes data were collected from 117 and 200 observation sites respectively, using 100 m x 200 m quadrats. At each quadrat crossing, a sample quadrat of 20 m x 20 m was demarcated for scanning rodent burrows whereby burrows encountered were counted and their portal orientation and burrow use described. Within each sample quadrat, selected soil physical properties including thickness of the soil genetic horizons and soil dry consistence were determined. Soil samples were collected from each horizon for laboratory texture analysis. Temperature (surface and subsurface to a depth 10 cm) and relative humidity at a depth of 10 and 30 cm were collected using infrared, thermo-couple thermometers and i-Buttons. Descriptive statistics, ANOVA and logistic regression were used to analyse the data by R-software. There were significant (P=.0001) differences between the two landscapes regarding topsoil depth, infrared temperature, relative humidity and rodent burrows’ abundance. In the high plague frequency landscape there was a significant influence (P=.05) of topsoil horizon thickness on rodent burrows’ abundance and use. Results also indicate that soil temperature to a depth of 10 cm was significantly (P=.05) correlated with rodent burrow use. Likewise, in the medium plague frequency landscape, soil physical properties and soil microclimate significantly (P=.0001) discouraged rodent burrowing. It was concluded that soil physical and soil microclimate encouraged and discouraged burrowing in the high and the medium plague frequency landscapes, respectively. The landscape with high rodent burrows’ abundance corresponded with high plague frequency records

Landform and surface attributes for prediction of rodent burrows in the Western Usambara Mountains, Tanzania

Previous studies suggest that rodent burrows, a proxy for rodent population are important for predicting plague risk areas. However, studies that link landform, surface attributes and rodent burrows in the Western Usambara Mountains in Tanzania are scanty. Therefore, this study was conducted in plague endemic area of the Western Usambara Mountains in northern, Tanzania, to explore the relationship between rodent burrows, and landform and surface attributes. The study was carried out in three areas corresponding to high (Lokome), medium (Lukozi) and low (Mwangoi) frequency of reported plague cases. Data were collected from 117, 200 and 170 observation sites for Lokome, Lukozi and Mwangoi, respectively using 100 m x 200 m quadrats. Remote sensing and field surveys were used to collect data on landform and surface attributes. Rodent burrows were surveyed and quantified by counting the number of burrows in 20m x 20m grids demarcated on the main 100m x 200m quadrats. The collected data were analysed in R software using boosted regression trees (BRT) technique. Rodent burrows were found at an elevation of above 1600m in the high and medium plague frequency landscapes. No burrows were found in the low plague frequency landscape situated below 1500m. BRT analysis shows a significant relationship between landform characteristics and rodent burrows in both high and medium plague frequency landscapes. Overall, elevation and hillshade are the most important determinants of rodent burrow distribution in the studied landscapes. It is concluded that in high altitudes, specific landform attributes (hill-shade, slope, elevation) and vegetation cover- favour rodent burrowingstatus: publishe

The effect of soil physical properties and soil microclimate on rodent burrows’ abundance and their characteristics in Western Usambara Mountains, Tanzania

The present study was carried out between September 2009 and June 2013 in Western Usambara Mountains plague focus with the aim of establishing the influence of selected soil physical properties and soil microclimate on rodent burrows’ abundance, portal orientation and use. Two landscapes with high and medium plague frequencies in Lokome and Lukozi villages were studied. In the two landscapes data were collected from 117 and 200 observation sites respectively, using 100 m x 200 m quadrats. At each quadrat crossing, a sample quadrat of 20 m x 20 m was demarcated for scanning rodent burrows whereby burrows encountered were counted and their portal orientation and burrow use described. Within each sample quadrat, selected soil physical properties including thickness of the soil genetic horizons and soil dry consistence were determined. Soil samples were collected from each horizon for laboratory texture analysis. Temperature (surface and subsurface to a depth 10 cm) and relative humidity at a depth of 10 and 30 cm were collected using infrared, thermo-couple thermometers and i-Buttons. Descriptive statistics, ANOVA and logistic regression were used to analyse the data by R-software. There were significant (P=.0001) differences between the two landscapes regarding topsoil depth, infrared temperature, relative humidity and rodent burrows’ abundance. In the high plague frequency landscape there was a significant influence (P=.05) of topsoil horizon thickness on rodent burrows’ abundance and use. Results also indicate that soil temperature to a depth of 10 cm was significantly (P=.05) correlated with rodent burrow use. Likewise, in the medium plague frequency landscape, soil physical properties and soil microclimate significantly (P=.0001) discouraged rodent burrowing. It was concluded that soil physical and soil microclimate encouraged and discouraged burrowing in the high and the medium plague frequency landscapes, respectively. The landscape with high rodent burrows’ abundance corresponded with high plague frequency records