Regulation of HOXA2 gene expression by the ATP‐dependent chromatin remodeling enzyme CHD8

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/116349/1/feb2s0014579310000414.pd

Hydrogeomorphic Classification for Great Lakes Coastal Wetlands

A hydrogeomorphic classification scheme for Great Lakes coastal wetlands is presented. The classification is hierarchical and first divides the wetlands into three broad hydrogeomorphic systems, lacustrine, riverine, and barrier-protected, each with unique hydrologic flow characteristics and residence time. These systems are further subdivided into finer geomorphic types based on physical features and shoreline processes. Each hydrogeomorphic wetland type has associated plant and animal communities and specific physical attributes related to sediment type, wave energy, water quality, and hydrology

Quadrilateral-octagon coordinates for almost normal surfaces

Normal and almost normal surfaces are essential tools for algorithmic 3-manifold topology, but to use them requires exponentially slow enumeration algorithms in a high-dimensional vector space. The quadrilateral coordinates of Tollefson alleviate this problem considerably for normal surfaces, by reducing the dimension of this vector space from 7n to 3n (where n is the complexity of the underlying triangulation). Here we develop an analogous theory for octagonal almost normal surfaces, using quadrilateral and octagon coordinates to reduce this dimension from 10n to 6n. As an application, we show that quadrilateral-octagon coordinates can be used exclusively in the streamlined 3-sphere recognition algorithm of Jaco, Rubinstein and Thompson, reducing experimental running times by factors of thousands. We also introduce joint coordinates, a system with only 3n dimensions for octagonal almost normal surfaces that has appealing geometric properties.Comment: 34 pages, 20 figures; v2: Simplified the proof of Theorem 4.5 using cohomology, plus other minor changes; v3: Minor housekeepin

Boundary conditions at a fluid - solid interface

We study the boundary conditions at a fluid-solid interface using molecular dynamics simulations covering a broad range of fluid-solid interactions and fluid densities, and both simple and chain-molecule fluids. The slip length is shown to be independent of the type of flow, but rather is related to the fluid organization near the solid, as governed by the fluid-solid molecular interactions.Comment: REVtex, to appear in Physical Review Letter

Vacuum UV (VUV) Photo-Oxidation of Polyethersulfone (PES)

International need for water quality is placing a high demand on separation technology to develop advanced oxidative processes for polyethersulfone (PES) membranes to help improve water purification. Therefore, VUV photo-oxidation with a low pressure Ar plasma was studied to improve the hydrophilicity of PES by flowing oxygen over the surface during treatment. X-ray photoelectron spectroscopy (XPS) detected a decrease in the C at% (4.4 ± 1.7 at%), increase in O at% (3.7 ± 1.0 at%), and a constant S at% (5.4 ± 0.2 at%). Curve fitting of the XPS spectra showed a decrease in sp2 C-C aromatic group bonding, and an increase in C-O, C-S, O=C-OH, sulphonate (-SO3 ) and sulphate (-SO4 ) functional groups with treatment time. The water contact angle decreased from 71.9◦ for untreated PES down to a saturation level of 41.9◦ with treatment. Since scanning electron microscopy (SEM) showed no major changes in surface roughness, the increase in hydrophilicity was mainly due to oxidation of the surface. Washing the VUV photo-oxidized PES samples with water or ethanol increased the water contact angle saturation level up to 66◦ indicating the formation of a weak boundary layer

Wetting and particle adsorption in nanoflows

Molecular dynamics simulations are used to study the behavior of closely-fitting spherical and ellipsoidal particles moving through a fluid-filled cylinder at nanometer scales. The particle, the cylinder wall and the fluid solvent are all treated as atomic systems, and special attention is given to the effects of varying the wetting properties of the fluid. Although the modification of the solid-fluid interaction leads to significant changes in the microstructure of the fluid, its transport properties are found to be the same as in bulk. Independently of the shape and relative size of the particle, we find two distinct regimes as a function of the degree of wetting, with a sharp transition between them. In the case of a highly-wetting suspending fluid, the particle moves through the cylinder with an average axial velocity in agreement with that obtained from the solution of the continuum Stokes equations. In contrast, in the case of less-wetting fluids, only the early-time motion of the particle is consistent with continuum dynamics. At later times, the particle is eventually adsorbed onto the wall and subsequently executes an intermittent stick-slip motion.We show that van der Walls forces are the dominant contribution to the particle adsorption phenomenon and that depletion forces are weak enough to allow, in the highly-wetting situation, an initially adsorbed particle to spontaneously desorb

Explanation at the opioid receptor level for differing toxicity of morphine and morphine 6-glucuronide.

The radiolabelled opioid receptor binding affinities of morphine and its active metabolite morphine 6-glucuronide at the total mu, mu 1, mu 2 and delta receptors were determined. Morphine 6-glucuronide was found to have a 4-fold lower affinity for the mu 2 receptor (IC50 17 nM and 82 nM for morphine and morphine 6-glucuronide respectively, P = 0.01), the receptor postulated to be responsible for mediating the respiratory depression and gastrointestinal effects after morphine. This provides a possible explanation for the reduced respiratory depression and vomiting seen following morphine 6-glucuronide in man. A similar reduction in affinity of morphine 6-glucuronide was seen at the total mu receptor whilst there was no significant difference seen at the mu 1 or delta receptor. Hence the increased analgesic potency of morphine 6-glucuronide over morphine remains unexplained

High collocation of sand lance and protected top predators: implications for conservation and management

© The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Silva, T. L., Wiley, D. N., Thompson, M. A., Hong, P., Kaufman, L., Suca, J. A., Llopiz, J. K., Baumann, H., & Fay, G. High collocation of sand lance and protected top predators: implications for conservation and management. Conservation Science and Practice, (2021): 3:e274, doi: 10.1111/csp2.274.Spatial relationships between predators and prey provide critical information for understanding and predicting climate‐induced shifts in ecosystem dynamics and mitigating human impacts. We used Stellwagen Bank National Marine Sanctuary as a case study to investigate spatial overlap among sand lance (Ammodytes dubius), a key forage fish species, and two protected predators: humpback whales (Megaptera novaeangliae) and great shearwaters (Ardenna gravis). We conducted 6 years (2013–2018) of standardized surveys and quantified spatial overlap using the global index of collocation. Results showed strong, consistent collocation among species across seasons and years, suggesting that humpback whales and great shearwater distributions are tightly linked to sand lance. We propose that identifying sand lance habitats may indicate areas where humpbacks and shearwaters aggregate and are particularly vulnerable to human activities. Understanding how sand lance influence predator distributions can inform species protection and sanctuary management under present and future scenarios.This work was supported by the Bureau of Ocean Energy Management [IA agreement M17PG0019], NOAA Stellwagen Bank National Marine Sanctuary, U.S. Geological Survey, the Volgenau Foundation, and the Mudge Foundation

UV Photo-Oxidation of Polybenzimidazole (PBI)

Since polybenzimidazole (PBI) is often used in the aerospace industry and in high temperature fuel cells, this research investigated the surface modification of PBI film with 253.7 and 184.9 nm UV photo-oxidation. As observed by X-ray photoelectron spectroscopy (XPS), the oxygen concentration on the surface increased up to a saturation level of 20.2 ± 0.7 at %. With increasing treatment time, there were significant decreases in the concentrations of C-C sp2 and C=N groups and increases in the concentration of C=O, O-C=O, O-(C=O)-O, C-N, N-O, and N-C=O containing moieties due to 253.7 nm photo-oxidation of the aromatic groups of PBI and reaction with ozone produced by 184. 9 nm photo-dissociation of oxygen. Because no significant changes in surface topography were detected by AFM and SEM measurements, the observed decrease in the water contact angle down to ca. 44°, i.e., increase in hydrophilic, was due to the chemical changes on the surface

On the appropriate and inappropriate uses of probability distributions in climate projections and some alternatives

When do probability distribution functions (PDFs) about future climate misrepresent uncertainty? How can we recognise when such misrepresentation occurs and thus avoid it in reasoning about or communicating our uncertainty? And when we should not use a PDF, what should we do instead? In this paper we address these three questions. We start by providing a classification of types of uncertainty and using this classification to illustrate when PDFs misrepresent our uncertainty in a way that may adversely affect decisions. We then discuss when it is reasonable and appropriate to use a PDF to reason about or communicate uncertainty about climate. We consider two perspectives on this issue. On one, which we argue is preferable, available theory and evidence in climate science basically excludes using PDFs to represent our uncertainty. On the other, PDFs can legitimately be provided when resting on appropriate expert judgement and recognition of associated risks. Once we have specified the border between appropriate and inappropriate uses of PDFs, we explore alternatives to their use. We briefly describe two formal alternatives, namely imprecise probabilities and possibilistic distribution functions, as well as informal possibilistic alternatives. We suggest that the possibilistic alternatives are preferable