Differential and Prognostic Significance of HOXB7 in Gliomas

Diffuse glioma is the most common primary tumor of the central nervous system. The prognosis of the individual tumor is heavily dependent on its grade and subtype. Homeobox B7 (HOXB7), a member of the homeobox family, is abnormally overexpressed in a variety of tumors. However, its function in glioma is unclear. In this study, HOXB7 mRNA and protein expression levels were analyzed in 401 gliomas from the CGGA RNA-seq database (325 cases) and our hospital (76 cases). HOXB7 expression, at both mRNA and protein levels, were upregulated in glioblastoma (GBM) and isocitrate dehydrogenase 1 (IDH1) wild-type glioma tissues. Kaplan–Meier with log-rank test showed that patients with high HOXB7 expression had a poor prognosis (p < 0.0001). Moreover, HOXB7 protein was deleted in 90.9% (20/22) of oligodendrogliomas and 13.0% (3/23) of astrocytomas. The sensitivity and specificity of HOXB7 protein deletion in oligodendroglioma were 90.9% (20/22) and 87.0% (20/23), respectively. To verify the reliability of using HOXB7 in differentiating oligodendroglioma, we used 1p/19q fluorescence in situ hybridization (FISH) testing as a positive control. The Cohen’s kappa coefficient of HOXB7 immunohistochemistry staining and 1p/19q FISH testing was 0.778 (95% CI: 0.594–0.962, p < 0.001). In conclusion, HOXB7 is an independent predictor of poor prognosis in all grade gliomas. Additionally, HOXB7 is also a highly sensitive and specific indicator to differentiate oligodendroglioma from astrocytoma

An Adaptive Fuzzy Min-Max Neural Network Classifier Based on Principle Component Analysis and Adaptive Genetic Algorithm

A novel adaptive fuzzy min-max neural network classifier called AFMN is proposed in this paper. Combined with principle component analysis and adaptive genetic algorithm, this integrated system can serve as a supervised and real-time classification technique. Considering the loophole in the expansion-contraction process of FMNN and GFMN and the overcomplex network architecture of FMCN, AFMN maintains the simple architecture of FMNN for fast learning and testing while rewriting the membership function, the expansion and contraction rules for hyperbox generation to solve the confusion problems in the hyperbox overlap region. Meanwhile, principle component analysis is adopted to finish dataset dimensionality reduction for increasing learning efficiency. After training, the confidence coefficient of each hyperbox is calculated based on the distribution of samples. During classifying procedure, utilizing adaptive genetic algorithm to complete parameter optimization for AFMN can also fasten the entire procedure than traversal method. For conditions where training samples are insufficient, data core weight updating is indispensible to enhance the robustness of classifier and the modified membership function can adjust itself according to the input varieties. The paper demonstrates the performance of AFMN through substantial examples in terms of classification accuracy and operating speed by comparing it with FMNN, GFMN, and FMCN

High-throughput cell-based screening reveals a role for ZNF131 as a repressor of ERalpha signaling

<p>Abstract</p> <p>Background</p> <p>Estrogen receptor α (ERα) is a transcription factor whose activity is affected by multiple regulatory cofactors. In an effort to identify the human genes involved in the regulation of ERα, we constructed a high-throughput, cell-based, functional screening platform by linking a response element (ERE) with a reporter gene. This allowed the cellular activity of ERα, in cells cotransfected with the candidate gene, to be quantified in the presence or absence of its cognate ligand E2.</p> <p>Results</p> <p>From a library of 570 human cDNA clones, we identified zinc finger protein 131 (ZNF131) as a repressor of ERα mediated transactivation. ZNF131 is a typical member of the BTB/POZ family of transcription factors, and shows both ubiquitous expression and a high degree of sequence conservation. The luciferase reporter gene assay revealed that ZNF131 inhibits ligand-dependent transactivation by ERα in a dose-dependent manner. Electrophoretic mobility shift assay clearly demonstrated that the interaction between ZNF131 and ERα interrupts or prevents ERα binding to the estrogen response element (ERE). In addition, ZNF131 was able to suppress the expression of pS2, an ERα target gene.</p> <p>Conclusion</p> <p>We suggest that the functional screening platform we constructed can be applied for high-throughput genomic screening candidate ERα-related genes. This in turn may provide new insights into the underlying molecular mechanisms of ERα regulation in mammalian cells.</p

Engineering design and economic analysis of offshore seaweed farm

As global demand for sustainable biomass and need to mitigate global warming begin to rise, cultivation of seaweed has gained significant attention in recent years due to its potential for carbon recycling. However, limited availability of suitable coastal areas for large-scale seaweed cultivation has led to exploration of offshore environments as a viable alternative. The nature of many offshore environments often exposes seaweed farming systems to harsh environmental conditions, including strong waves, currents, and wind. These factors can lead to structural failures, kelp losses, and significant financial losses for seaweed farmers. The main objective of this study is to present a robust design and numerical analysis of an economically viable floating offshore kelp farm facility, and evaluate its stability and mooring system performance. A numerical method of preliminary designs of the offshore aquaculture systems were developed using the OrcaFlex software. The models were subjected to a series of dynamic environmental loading scenarios representing extreme events. These simulations aimed to forecast the overall dynamic response of an offshore kelp farm at a depth of 50m and to determine the best possible farm design with structural integrity for a selected offshore environment. Furthermore, to assess the economic feasibility of establishing offshore seaweed farms, a comprehensive capital expenses analysis was conducted. The results revealed that, in terms of the kelp farms with the same number of the kelp cultivating lines, the cost of building kelp farms will be strongly affected by the cost of mooring lines. The present study may help to understand the dynamic response and economic feasibility of offshore kelp farms

Research Progress of Tyramine Formation and Control Methods in Fermented Meat Products

Fermented meat products is the meat products with special flavor, color, texture and longer shelf life formed by a series of changes under natural or artificially controlled conditions by the action of microorganisms or enzymes. Fermented meat products is popular with consumers, but they are rich in protein and have a great potential for high levels of biogenic amines. Among them, histamine and tyramine are the most toxic. Consumption of tyramine-rich foods might cause headache, hypertension and other adverse reactions. Therefore, it is extremely necessary to control the tyramine content in fermented meat products. In this paper, the formation pathways, control methods and effects of tyramine in fermented meat products are reviewed. Among them, the main formation pathway is the decarboxylation of tyrosine by the action of decarboxylase, in addition to the existence of chemical pathways related to lipid oxidation products, while the more effective control methods are the addition of auxiliaries and the inoculation of fermentation agents. This paper aims to provid a theoretical support for reducing the tyramine content in fermented meat products and improving the safety of fermented meat products

The proteomics of lipid droplets: structure, dynamics, and functions of the organelle conserved from bacteria to humans.

Lipid droplets are cellular organelles that consists of a neutral lipid core covered by a monolayer of phospholipids and many proteins. They are thought to function in the storage, transport, and metabolism of lipids, in signaling, and as a specialized microenvironment for metabolism in most types of cells from prokaryotic to eukaryotic organisms. Lipid droplets have received a lot of attention in the last 10 years as they are linked to the progression of many metabolic diseases and hold great potential for the development of neutral lipid-derived products, such as biofuels, food supplements, hormones, and medicines. Proteomic analysis of lipid droplets has yielded a comprehensive catalog of lipid droplet proteins, shedding light on the function of this organelle and providing evidence that its function is conserved from bacteria to man. This review summarizes many of the proteomic studies on lipid droplets from a wide range of organisms, providing an evolutionary perspective on this organelle

Investigation of nonlinear wave-induced seabed response around mono-pile foundation

YesStability and safety of offshore wind turbines with mono-pile foundations, affected by nonlinear wave effect and dynamic seabed response, are the primary concerns in offshore foundation design. In order to address these problems, the nonlinear wave effect on dynamic seabed response in the vicinity of mono-pile foundation is investigated using an integrated model, developed using OpenFOAM, which incorporates both wave model (waves2Foam) and Biot’s poro-elastic model. The present model was validated against several laboratory experiments and promising agreements were obtained. Special attention was paid to the systematic analysis of pore water pressure as well as the momentary liquefaction in the proximity of mono-pile induced by nonlinear wave effects. Various embedment depths of mono-pile relevant for practical engineering design were studied in order to attain the insights into nonlinear wave effect around and underneath the mono-pile foundation. By comparing time-series of water surface elevation, inline force, and wave-induced pore water pressure at the front, lateral, and lee side of mono-pile, the distinct nonlinear wave effect on pore water pressure was shown. Simulated results confirmed that the presence of mono-pile foundation in a porous seabed had evident blocking effect on the vertical and horizontal development of pore water pressure. Increasing embedment depth enhances the blockage of vertical pore pressure development and hence results in somewhat reduced momentary liquefaction depth of the soil around the mono-pile foundation.Energy Technology Partnership (ETP), Wood Group Kenny, and University of Aberdeen; the National Science Fund for Distinguished Young Scholars (51425901) and the 111 project (B12032)

Development of graphitic carbon nitride quantum dots-based oxygen self-sufficient platforms for enhanced corneal crosslinking

Keratoconus, a disorder characterized by corneal thinning and weakening, results in vision loss. Corneal crosslinking (CXL) can halt the progression of keratoconus. The development of accelerated corneal crosslinking (A-CXL) protocols to shorten the treatment time has been hampered by the rapid depletion of stromal oxygen when higher UVA intensities are used, resulting in a reduced cross-linking effect. It is therefore imperative to develop better methods to increase the oxygen concentration within the corneal stroma during the A-CXL process. Photocatalytic oxygen-generating nanomaterials are promising candidates to solve the hypoxia problem during A-CXL. Biocompatible graphitic carbon nitride (g-C3N4) quantum dots (QDs)-based oxygen self-sufficient platforms including g-C3N4 QDs and riboflavin/g-C3N4 QDs composites (RF@g-C3N4 QDs) have been developed in this study. Both display excellent photocatalytic oxygen generation ability, high reactive oxygen species (ROS) yield, and excellent biosafety. More importantly, the A-CXL effect of the g-C3N4 QDs or RF@g-C3N4 QDs composite on male New Zealand white rabbits is better than that of the riboflavin 5’-phosphate sodium (RF) A-CXL protocol under the same conditions, indicating excellent strengthening of the cornea after A-CXL treatments. These lead us to suggest the potential application of g-C3N4 QDs in A-CXL for corneal ectasias and other corneal diseases

Microstructural Characteristics and Mechanical Properties of an Additively Manufactured Nickel-Based Superalloy

The nickel-based superalloys processed by additive manufacturing are very promising structural materials in aircraft engines as high-pressure turbine discs. In this work, a nickel-based superalloy with good mechanical performance and few defects was manufactured by optimized selective laser melting (SLM) processing. We then investigated the influences of post heat treatments on its microstructural characteristics and mechanical performance. The results indicated that a fine grain size with uniform grain orientation was presented in the as-printed nickel-based superalloy sample. After heat treatments, the grains were slightly grown and grain orientation was also changed. Under transmission electron microscopy, fine subgrains with an approximate size of 0.5 &mu;m were found in the as-printed sample which accompanied massive dislocations and discontinuous Laves phases. After the post heat treatments, fine subgrains and less dislocations were retained. On the other hand, massive &gamma;&prime; and &gamma;&Prime; precipitates with an orientation relationship of (001)[100]&gamma;&prime;//(100)[001]&gamma; or (001)[100]&gamma;&Prime;//(100)[001]&gamma; were formed. As a result, the yield stress and tensile strength increased to 1362 and 1410 MPa, respectively, in a heat-treated sample, which retained the identical elongation of the as-printed specimen

Microstructural Characteristics and Mechanical Properties of an Additively Manufactured Nickel-Based Superalloy

The nickel-based superalloys processed by additive manufacturing are very promising structural materials in aircraft engines as high-pressure turbine discs. In this work, a nickel-based superalloy with good mechanical performance and few defects was manufactured by optimized selective laser melting (SLM) processing. We then investigated the influences of post heat treatments on its microstructural characteristics and mechanical performance. The results indicated that a fine grain size with uniform grain orientation was presented in the as-printed nickel-based superalloy sample. After heat treatments, the grains were slightly grown and grain orientation was also changed. Under transmission electron microscopy, fine subgrains with an approximate size of 0.5 μm were found in the as-printed sample which accompanied massive dislocations and discontinuous Laves phases. After the post heat treatments, fine subgrains and less dislocations were retained. On the other hand, massive γ′ and γ″ precipitates with an orientation relationship of (001)[100]γ′//(100)[001]γ or (001)[100]γ″//(100)[001]γ were formed. As a result, the yield stress and tensile strength increased to 1362 and 1410 MPa, respectively, in a heat-treated sample, which retained the identical elongation of the as-printed specimen