FOXP3 interacts with hnRNPF to modulate pre-mRNA alternative splicing

FOXP3 promotes the development and function of regulatory T cells mainly through regulating the transcription of target genes. RNA alternative splicing has been implicated in a wide range of physiological and pathophysiological processes. We report here that FOXP3 associates with heterogeneous nuclear ribonucleoprotein (hnRNP) F through the exon 2-encoded region of FOXP3 and the second quasi-RNA recognition motif (qRRM) of hnRNPF. FOXP3 represses the ability of hnRNPF to bind to its target pre-mRNA and thus modulates RNA alternative splicing. Furthermore, overexpression of mouse hnRNPF in in vitro-differentiated regulatory T cells (Tregs) reduced their suppressive function. Thus, our studies identify a novel mechanism by which FOXP3 regulates mRNA alternative splicing to modulate the function of regulatory T cells

A Data-Driven Intermittent Online Coverage Path Planning Method for AUV-Based Bathymetric Mapping

Bathymetric mapping with Autonomous Underwater Vehicles (AUVs) receives increased attentions in recent years. AUVs offer a lower operational cost and smaller carbon footprint with reduced ship usage, and they can provide higher resolution data when surveying the seabed at a closer distance if compared to ships. However, advancements are still needed to improve the data quality of AUV-based surveys. Unlike mobile robots with deterministic mapping performance, multibeam sonars used in AUV-based bathymetric mapping often yields inconsistent swath width due to the varied seabed elevation and surficial properties. As a result, mapping voids may exist between planned lawnmower transects. Although this could be solved by planning closer lawnmower paths, mission time increases proportionally. Therefore, an onboard path planner is demanded to assure the defined survey objective, i.e., coverage rate. Here in this paper, we present a new data-driven coverage path planning (CPP) method, in which the vehicle automatically updates the waypoints intermittently based on an objective function constructed using the information about the exploration preference, sonar performance, and coverage efficiency. The goal of the proposed method is to plan a cost-effective path on-the-fly to obtain high quality mapping result meeting the requirements in coverage rate and uncertainty. The proposed CPP method has been evaluated in a simulated environment with a 6DOF REMUS AUV model and a realistic seafloor topography. A series of trials has been conducted to investigate the performance affected by the parameters in the objective function. We also compared the proposed method with traditional lawnmower and spiral paths. The results show that the weight assignment in the objective function is critical as they affect the overall survey performance. With proper weight settings, the AUV yields better survey performance, coverage rate and coverage efficiency, compared to traditional approaches. Moreover, the proposed method can be easily adjusted or modified to achieve different coverage goals, such as rapid data gathering of the entire region, survey of irregular workspace, or maintaining real time path planning

LncRNA-ATB inhibits the proliferation and invasion of NSCLC cells by regulating MiR-200s expression

Purpose: To investigate the effect of lncRNA-ATB on the proliferation and invasion of non-small cell lung cancer (NSCLC) cells, and its mechanism of action. Methods: LncRNA-ATB mRNA levels in carcinoma tissues and normal adjacent tissues of 38 NSCLC patients in Peking University Shougang Hospital were determined by reverse transcription-polymerase chain reaction (RT-PCR). Human NSCLC A549 cell line was divided into control and lncRNA-ATB inhibition (si-ATB) groups, respectively. The proliferation and invasion of cells in each group were assessed. Subsequently, the effect of lncRNA-ATB inhibition on the growth of NSCLC cells was evaluated by subcutaneous tumor formation assay. Results: The expression of lncRNA-ATB was significantly higher in carcinoma tissues than in normal adjacent tissues in NSCLC patients. Cell counting kit-8 (CCK-8) assay results showed that si-ATB group displayed a weakened ability of the cells to proliferate (p < 0.05). Furthermore, deoxyribonucleic acid (DNA) replication ability was weaker in si-ATB group than in the control group. Wound healing assay results showed that the migration ability of cells in the si-ATB group was lower than that in the control group. Also, lncRNA-ATB knockdown inhibited the invasion ability of human NSCLC cells (p < 0.05). Tumor formation assay data indicate that lncRNA-ATB knockdown significantly repressed the subcutaneous tumor formation ability of NSCLC cells. Furthermore, lncRNA-ATB knockdown in NSCLC cells up-regulated miR-200a, miR-200b and miR-200c. Conclusion: The expression level of LncRNA-ATB is elevated in carcinoma tissues of NSCLC patients, and its knockdown suppresses the proliferation and invasion of NSCLC cells by up-regulating miR-200s. This finding suggests that it is a potential strategy for the management of NSCLC patients

Ammonia and salinity tolerance of Penaeus monodon across eight breeding families

© 2016 Chen et al. This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.Ammonia nitrogen and salinity tolerance of Penaeus monodon from eight selected breeding families were evaluated at the concentration of 67.65 mg L−1 ammonia-N and reducing salinity from 15 to 0 ‰. The final survival of family A (88.67 ± 9.81 %) was highest, and the final survival of family B was lowest (24.33 ± 14.01 %) after the ammonia tolerance test. Upon completing the sudden drop salinity test from 15 to 0 ‰, the highest survival was observed in family B (98.00 ± 1.73 %), and the lowest survival was found in family H (18.00 ± 1.73 %). Family A showed the strongest ability to tolerate ammonia stress, and family B showed the strongest tolerance to low salinity. This study suggests that the tolerance of salinity and ammonia nitrogen varied between breeding families. Results from the present study provide useful information towards selective breeding in shrimp in aquaculture for environmental tolerance

Length–weight relationship and condition factor of giant tiger shrimp, Penaeus monodon (Fabricius, 1798) from four breeding families

This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.Background: Length–weight relationships and condition factors of giant tiger shrimp Penaeus monodon (Fabricius, 1798) from four breeding families (family S: South China seas family, family A: African family, family SA: ♂ South China seas family × ♀ Africa family, family AS: ♂ Africa family × ♀ South China seas family) were evaluated in this study. Findings and conclusion: Length–weight relationships can be expressed as W = 0.0239BL2.789 (R2 = 0.8977) in family S, W = 0.0206BL2.9107 (R2 = 0.9107) in family A, W = 0.0211BL2.831 (R2 = 0.8869) in family SA, and W = 0.0249BL2.781 (R2 = 0.9159) in family AS. The growth of P. monodon from four breeding families follows a negative allometric trend. Fulton’s body condition factor (K) was not significantly different in males, while in females, the highest K (3.07) was observed in family AS, and the lowest K was found in family A (1.88). Results from the present study indicate that the cross group family AS (♂ Africa family × ♀ South China seas family) has obvious heterosis in females. This may suggest that the direction of further breeding of P. monodon, should be conducted by using Africa family as male parent, and South China seas family as female parent. Results from the present study will provide valuable information on selective breeding in P. monodon. Methodology used in the present study can also be applied in other similar species

The Progress on Genetic Analysis of Nasopharyngeal Carcinoma

Nasopharyngeal carcinoma (NPC) is a rare malignancy in most parts of the world, but is one of the most common cancers in Southeast Asia. Both genetic and environmental factors contribute to the tumorigenesis of NPC, most notably the consumption of certain salted food items and Epstein-Barr virus infection. This review will focus on the current progress of the genetic analysis of NPC (genetic susceptibilities and somatic alterations). We will review the current advances in genomic technologies and their shaping of the future direction of NPC research

Transcriptomic dissection of tongue squamous cell carcinoma

<p>Abstract</p> <p>Background</p> <p>The head and neck/oral squamous cell carcinoma (HNOSCC) is a diverse group of cancers, which develop from many different anatomic sites and are associated with different risk factors and genetic characteristics. The oral tongue squamous cell carcinoma (OTSCC) is one of the most common types of HNOSCC. It is significantly more aggressive than other forms of HNOSCC, in terms of local invasion and spread. In this study, we aim to identify specific transcriptomic signatures that associated with OTSCC.</p> <p>Results</p> <p>Genome-wide transcriptomic profiles were obtained for 53 primary OTSCCs and 22 matching normal tissues. Genes that exhibit statistically significant differences in expression between OTSCCs and normal were identified. These include up-regulated genes (MMP1, MMP10, MMP3, MMP12, PTHLH, INHBA, LAMC2, IL8, KRT17, COL1A2, IFI6, ISG15, PLAU, GREM1, MMP9, IFI44, CXCL1), and down-regulated genes (KRT4, MAL, CRNN, SCEL, CRISP3, SPINK5, CLCA4, ADH1B, P11, TGM3, RHCG, PPP1R3C, CEACAM7, HPGD, CFD, ABCA8, CLU, CYP3A5). The expressional difference of IL8 and MMP9 were further validated by real-time quantitative RT-PCR and immunohistochemistry. The Gene Ontology analysis suggested a number of altered biological processes in OTSCCs, including enhancements in phosphate transport, collagen catabolism, I-kappaB kinase/NF-kappaB signaling cascade, extracellular matrix organization and biogenesis, chemotaxis, as well as suppressions of superoxide release, hydrogen peroxide metabolism, cellular response to hydrogen peroxide, keratinization, and keratinocyte differentiation in OTSCCs.</p> <p>Conclusion</p> <p>In summary, our study provided a transcriptomic signature for OTSCC that may lead to a diagnosis or screen tool and provide the foundation for further functional validation of these specific candidate genes for OTSCC.</p

NMP4 regulates the innate immune response to influenza A virus infection

Severe influenza A virus infection typically triggers excessive and detrimental lung inflammation with massive cell infiltration and hyper-production of cytokines and chemokines. We identified a novel function for nuclear matrix protein 4 (NMP4), a zinc-finger-containing transcription factor playing roles in bone formation and spermatogenesis, in regulating antiviral immune response and immunopathology. Nmp4-deficient mice are protected from H1N1 influenza infection, losing only 5% body weight compared to a 20% weight loss in wild type mice. While having no effects on viral clearance or CD8/CD4 T cell or humoral responses, deficiency of Nmp4 in either lung structural cells or hematopoietic cells significantly reduces the recruitment of monocytes and neutrophils to the lungs. Consistent with fewer innate cells in the airways, influenza-infected Nmp4-deficient mice have significantly decreased expression of chemokine genes Ccl2, Ccl7 and Cxcl1 as well as pro-inflammatory cytokine genes Il1b and Il6. Furthermore, NMP4 binds to the promoters and/or conserved non-coding sequences of the chemokine genes and regulates their expression in mouse lung epithelial cells and macrophages. Our data suggest that NMP4 functions to promote monocyte- and neutrophil-attracting chemokine expression upon influenza A infection, resulting in exaggerated innate inflammation and lung tissue damage