2,154 research outputs found
Clusters, phason elasticity, and entropic stabilisation: a theory perspective
Personal comments are made about the title subjects, including: the relation
of Friedel oscillations to Hume-Rothery stabilisation; how calculations may
resolve the random-tiling versus ideal pictures of quasicrystals; and the role
of entropies apart from tile-configurational.Comment: IOP macros; 8pp, 1 figure. In press, Phil. Mag. A (Proc. Intl. Conf.
on Quasicrystals 9, Ames Iowa, May 2005
Physical properties of metal-doped zinc oxide films for surface acoustic wave application
Metal-doped ZnO [MZO] thin films show changes of the following properties by a dopant. First, group III element (Al, In, Ga)-doped ZnO thin films have a high conductivity having an n-type semiconductor characteristic. Second, group I element (Li, Na, K)-doped ZnO thin films have high resistivity due to a dopant that accepts a carrier. The metal-doped ZnO (M = Li, Ag) films were prepared by radio frequency magnetron sputtering on glass substrates with the MZO targets. We investigated on the optical and electrical properties of the as-sputtered MZO films as dependences on the doping contents in the targets. All the MZO films had shown a preferred orientation in the [002] direction. As the quantity and the variety of metal dopants were changed, the crystallinity and the transmittance, as well as optical band gap were changed. The electrical resistivity was also changed with changing metal doping amounts and kinds of dopants. An epitaxial Li-doped ZnO film has a high resistivity and very smooth surface; it will have the most optimum conditions which can be used for the piezoelectric devices
Light Higgsino from Axion Dark Radiation
The recent observations imply that there is an extra relativistic degree of
freedom coined dark radiation. We argue that the QCD axion is a plausible
candidate for the dark radiation, not only because of its extremely small mass,
but also because in the supersymmetric extension of the Peccei-Quinn mechanism
the saxion tends to dominate the Universe and decays into axions with a sizable
branching fraction. We show that the Higgsino mixing parameter mu is bounded
from above when the axions produced at the saxion decays constitute the dark
radiation: mu \lesssim 300 GeV for a saxion lighter than 2m_W, and mu less than
the saxion mass otherwise. Interestingly, the Higgsino can be light enough to
be within the reach of LHC and/or ILC even when the other superparticles are
heavy with mass about 1 TeV or higher. We also estimate the abundance of axino
produced by the decays of Higgsino and saxion.Comment: 18 pages, 1 figure; published in JHE
Global organization of metabolic fluxes in the bacterium, Escherichia coli
Cellular metabolism, the integrated interconversion of thousands of metabolic
substrates through enzyme-catalyzed biochemical reactions, is the most
investigated complex intercellular web of molecular interactions. While the
topological organization of individual reactions into metabolic networks is
increasingly well understood, the principles governing their global functional
utilization under different growth conditions pose many open questions. We
implement a flux balance analysis of the E. coli MG1655 metabolism, finding
that the network utilization is highly uneven: while most metabolic reactions
have small fluxes, the metabolism's activity is dominated by several reactions
with very high fluxes. E. coli responds to changes in growth conditions by
reorganizing the rates of selected fluxes predominantly within this high flux
backbone. The identified behavior likely represents a universal feature of
metabolic activity in all cells, with potential implications to metabolic
engineering.Comment: 15 pages 4 figure
Nonequilibrium Singlet-Triplet Kondo Effect in Carbon Nanotubes
The Kondo-effect is a many-body phenomenon arising due to conduction
electrons scattering off a localized spin. Coherent spin-flip scattering off
such a quantum impurity correlates the conduction electrons and at low
temperature this leads to a zero-bias conductance anomaly. This has become a
common signature in bias-spectroscopy of single-electron transistors, observed
in GaAs quantum dots as well as in various single-molecule transistors. While
the zero-bias Kondo effect is well established it remains uncertain to what
extent Kondo correlations persist in non-equilibrium situations where inelastic
processes induce decoherence. Here we report on a pronounced conductance peak
observed at finite bias-voltage in a carbon nanotube quantum dot in the spin
singlet ground state. We explain this finite-bias conductance anomaly by a
nonequilibrium Kondo-effect involving excitations into a spin triplet state.
Excellent agreement between calculated and measured nonlinear conductance is
obtained, thus strongly supporting the correlated nature of this nonequilibrium
resonance.Comment: 21 pages, 5 figure
Remote Manipulation of Droplets on a Flexible Magnetically Responsive Film
The manipulation of droplets is used in a wide range of applications, from lab-on-a-chip devices to bioinspired functional surfaces. Although a variety of droplet manipulation techniques have been proposed, active, fast and reversible manipulation of pure discrete droplets remains elusive due to the technical limitations of previous techniques. Here, we describe a novel technique that enables active, fast, precise and reversible control over the position and motion of a pure discrete droplet with only a permanent magnet by utilizing a magnetically responsive flexible film possessing actuating hierarchical pillars on the surface. This magnetically responsive surface shows reliable actuating capabilities with immediate field responses and maximum tilting angles of ???90??. Furthermore, the magnetic responsive film exhibits superhydrophobicity regardless of tilting angles of the actuating pillars. Using this magnetically responsive film, we demonstrate active and reversible manipulation of droplets with a remote magnetic force.open0
Increased entropy of signal transduction in the cancer metastasis phenotype
Studies into the statistical properties of biological networks have led to
important biological insights, such as the presence of hubs and hierarchical
modularity. There is also a growing interest in studying the statistical
properties of networks in the context of cancer genomics. However, relatively
little is known as to what network features differ between the cancer and
normal cell physiologies, or between different cancer cell phenotypes. Based on
the observation that frequent genomic alterations underlie a more aggressive
cancer phenotype, we asked if such an effect could be detectable as an increase
in the randomness of local gene expression patterns. Using a breast cancer gene
expression data set and a model network of protein interactions we derive
constrained weighted networks defined by a stochastic information flux matrix
reflecting expression correlations between interacting proteins. Based on this
stochastic matrix we propose and compute an entropy measure that quantifies the
degree of randomness in the local pattern of information flux around single
genes. By comparing the local entropies in the non-metastatic versus metastatic
breast cancer networks, we here show that breast cancers that metastasize are
characterised by a small yet significant increase in the degree of randomness
of local expression patterns. We validate this result in three additional
breast cancer expression data sets and demonstrate that local entropy better
characterises the metastatic phenotype than other non-entropy based measures.
We show that increases in entropy can be used to identify genes and signalling
pathways implicated in breast cancer metastasis. Further exploration of such
integrated cancer expression and protein interaction networks will therefore be
a fruitful endeavour.Comment: 5 figures, 2 Supplementary Figures and Table
A Tunable Two-impurity Kondo system in an atomic point contact
Two magnetic atoms, one attached to the tip of a Scanning Tunneling
Microscope (STM) and one adsorbed on a metal surface, each constituting a Kondo
system, have been proposed as one of the simplest conceivable systems
potentially exhibiting quantum critical behaviour. We have succeeded in
implementing this concept experimentally for cobalt dimers clamped between an
STM tip and a gold surface. Control of the tip-sample distance with
sub-picometer resolution allows us to tune the interaction between the two
cobalt atoms with unprecedented precision. Electronic transport measurements on
this two-impurity Kondo system reveal a rich physical scenario which is
governed by a crossover from local Kondo screening to non-local singlet
formation due to antiferromagnetic coupling as a function of separation of the
cobalt atoms.Comment: 22 pages, 5 figure
A Role for ATF2 in Regulating MITF and Melanoma Development
The transcription factor ATF2 has been shown to attenuate melanoma susceptibility to apoptosis and to promote its ability to form tumors in xenograft models. To directly assess ATF2's role in melanoma development, we crossed a mouse melanoma model (Nras(Q61K)::Ink4aβ»/β») with mice expressing a transcriptionally inactive form of ATF2 in melanocytes. In contrast to 7/21 of the Nras(Q61K)::Ink4aβ»/β» mice, only 1/21 mice expressing mutant ATF2 in melanocytes developed melanoma. Gene expression profiling identified higher MITF expression in primary melanocytes expressing transcriptionally inactive ATF2. MITF downregulation by ATF2 was confirmed in the skin of Atf2β»/β» mice, in primary human melanocytes, and in 50% of human melanoma cell lines. Inhibition of MITF transcription by MITF was shown to be mediated by ATF2-JunB-dependent suppression of SOX10 transcription. Remarkably, oncogenic BRAF (V600E)-dependent focus formation of melanocytes on soft agar was inhibited by ATF2 knockdown and partially rescued upon shMITF co-expression. On melanoma tissue microarrays, a high nuclear ATF2 to MITF ratio in primary specimens was associated with metastatic disease and poor prognosis. Our findings establish the importance of transcriptionally active ATF2 in melanoma development through fine-tuning of MITF expression
The transcriptional response of Caenorhabditis elegans to ivermectin exposure identifies novel genes involved in the response to reduced food intake
We have examined the transcriptional response of Caenorhabditis elegans following exposure to the anthelmintic drug ivermectin (IVM) using whole genome microarrays and real-time QPCR. Our original aim was to identify candidate molecules involved in IVM metabolism and/or excretion. For this reason the IVM tolerant strain, DA1316, was used to minimise transcriptomic changes related to the phenotype of drug exposure. However, unlike equivalent work with benzimidazole drugs, very few of the induced genes were members of xenobiotic metabolising enzyme families. Instead, the transcriptional response was dominated by genes associated with fat mobilization and fatty acid metabolism including catalase, esterase, and fatty acid CoA synthetase genes. This is consistent with the reduction in pharyngeal pumping, and consequential reduction in food intake, upon exposure of DA1316 worms to IVM. Genes with the highest fold change in response to IVM exposure, cyp-37B1, mtl-1 and scl-2, were comparably up-regulated in response to shortβterm food withdrawal (4 hr) independent of IVM exposure, and GFP reporter constructs confirm their expression in tissues associated with fat storage (intestine and hypodermis). These experiments have serendipitously identified novel genes involved in an early response of C. elegans to reduced food intake and may provide insight into similar processes in higher organisms
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