1,472 research outputs found
Functional Compost
The aim of the research program Functional Compost is to develop and test compost, which have been enriched with chitin, for plant growth promoting properties and to recognise specific mechanisms. Two types of compost were included in the program: source separated biodegradable municipal solid waste compost (DM = 62 %) and garden and park waste compost (DM = 66 %). Chitin was added in trace amounts during the maturity phase, combined with two levels of trace amounts immediately before adding the compost to the growth medium. The research program includes several parallel experiments. In experiment I, compost (20 vol. %) was added to soil (no plants) and incubated at 15 C for 5 month, under regular determination of microbial respiration and gross and net N mineralization. There was a significant increase in respiration due to chitin enrichment, which could not be explained by the amount of C derived from the chitin, which therefore suggest a priming effect. The N analyses are still being processed in the laboratory, but data are expected to be available at the conference. In experiment II, compost was mixed with sand, put into pots in a climate chamber, and spring barley seeds infected with Fusarium culmorum were sown in the pots. After 3 weeks of growth, the health of the plants was determined, and the chitinase activity in the sand was measured. The health of the plants and the chitinase activity was significantly higher in the treatments receiving municipal waste compared to the treatments receiving garden waste compost. However, there was no clear effect of the chitin enrichment. Additionally, the microbial community structure of the two types of compost, with and without early chitin, was determined by Denaturing Gradient Gel Electrophoresis (DGGE). There was a clear separation between compost types, and with or without early chitin amendment. Experiment III is a regular growth experiment, and is running right now. Compost has been incorporated into soil, put into pots in the greenhouse, and spring barley is grown for 2 month before determination for wet and dry weight and N uptake. Data from experiment III is expected to be available at the conference
Beyond the Lines: Exploring the Impact of Adverse Childhood Experiences on NCAA Student-Athlete Health
Emerging research has highlighted a link between adverse childhood experiences (ACEs) and various health concerns experienced by NCAA student-athletes. Building on prior work (Kaier, Cromer, Davis, & Strunk, 2015), we hypothesized that ACEs would significantly predict student-athletesâ biopsychosocial (BPS) health and that spirituality would serve as a protective factor against the effect of ACEs on BPS health outcomes. Division I, II, and III NCAA student-athletes (N = 477) representing 20 sports across 53 universities completed an online quantitative survey (k = 133) that assessed for ACEs, injury/physical health concerns, anxiety, depression, stress, social support, substance use, and spirituality. Nearly two-thirds (64.5%) of student-athletes endorsed at least one ACE. Structural Equation Models (SEMs) yielded significant positive relationships between ACEs and anxiety, depression, perceived stress, injury/health problems, and substance use, and a negative relationship with social support while controlling for sex, race, school, and division. Additionally, spirituality had a significant negative effect on anxiety, depression, perceived stress, injury/health problems, and substance use, and a positive effect on social support. SEM moderation analyses indicated that spirituality only moderated the relationship between ACEs and substance use. Specifically, at average and high levels of spirituality, the relationship between ACEs and substance use was stronger. Clinical implications, study limitations, and future research directions are discussed
Convex optimization problem prototyping for image reconstruction in computed tomography with the Chambolle-Pock algorithm
The primal-dual optimization algorithm developed in Chambolle and Pock (CP),
2011 is applied to various convex optimization problems of interest in computed
tomography (CT) image reconstruction. This algorithm allows for rapid
prototyping of optimization problems for the purpose of designing iterative
image reconstruction algorithms for CT. The primal-dual algorithm is briefly
summarized in the article, and its potential for prototyping is demonstrated by
explicitly deriving CP algorithm instances for many optimization problems
relevant to CT. An example application modeling breast CT with low-intensity
X-ray illumination is presented.Comment: Resubmitted to Physics in Medicine and Biology. Text has been
modified according to referee comments, and typos in the equations have been
correcte
Reaction mechanism of dimethyl ether carbonylation to methyl acetate over mordenite: a combined DFT/experimental study
Dimethyl ether carbonylation to methyl acetate over mordenite was studied theoretically with density functional theory calculations and experimentally in a fixed bed flow reactor. A new reaction path to methyl acetate entirely in the 8 membered ring was discovered.</p
The Computational 2D Materials Database: High-Throughput Modeling and Discovery of Atomically Thin Crystals
We introduce the Computational 2D Materials Database (C2DB), which organises
a variety of structural, thermodynamic, elastic, electronic, magnetic, and
optical properties of around 1500 two-dimensional materials distributed over
more than 30 different crystal structures. Material properties are
systematically calculated by state-of-the art density functional theory and
many-body perturbation theory (GW\!_0 and the Bethe-Salpeter Equation
for 200 materials) following a semi-automated workflow for maximal
consistency and transparency. The C2DB is fully open and can be browsed online
or downloaded in its entirety. In this paper, we describe the workflow behind
the database, present an overview of the properties and materials currently
available, and explore trends and correlations in the data. Moreover, we
identify a large number of new potentially synthesisable 2D materials with
interesting properties targeting applications within spintronics,
(opto-)electronics, and plasmonics. The C2DB offers a comprehensive and easily
accessible overview of the rapidly expanding family of 2D materials and forms
an ideal platform for computational modeling and design of new 2D materials and
van der Waals heterostructures.Comment: Add journal reference and DOI; Minor updates to figures and wordin
Development of a Precision Medicine Workflow in Hematological Cancers, Aalborg University Hospital, Denmark
Within recent years, many precision cancer medicine initiatives have been developed. Most of these have focused on solid cancers, while the potential of precision medicine for patients with hematological malignancies, especially in the relapse situation, are less elucidated. Here, we present a demographic unbiased and observational prospective study at Aalborg University Hospital Denmark, referral site for 10% of the Danish population. We developed a hematological precision medicine workflow based on sequencing analysis of whole exome tumor DNA and RNA. All steps involved are outlined in detail, illustrating how the developed workflow can provide relevant molecular information to multidisciplinary teams. A group of 174 hematological patients with progressive disease or relapse was included in a non-interventional and population-based study, of which 92 patient samples were sequenced. Based on analysis of small nucleotide variants, copy number variants, and fusion transcripts, we found variants with potential and strong clinical relevance in 62% and 9.5% of the patients, respectively. The most frequently mutated genes in individual disease entities were in concordance with previous studies. We did not find tumor mutational burden or micro satellite instability to be informative in our hematologic patient cohort
CK2 phosphorylation-dependent interaction between aprataxin and MDC1 in the DNA damage response
Aprataxin, defective in the neurodegenerative disorder ataxia oculomotor apraxia type 1, resolves abortive DNA ligation intermediates during DNA repair. Here, we demonstrate that aprataxin localizes at sites of DNA damage induced by high LET radiation and binds to mediator of DNA-damage checkpoint protein 1 (MDC1/NFBD1) through a phosphorylation-dependent interaction. This interaction is mediated via the aprataxin FHA domain and multiple casein kinase 2 di-phosphorylated S-D-T-D motifs in MDC1. X-ray structural and mutagenic analysis of aprataxin FHA domain, combined with modelling of the pSDpTD peptide interaction suggest an unusual FHA binding mechanism mediated by a cluster of basic residues at and around the canonical pT-docking site. Mutation of aprataxin FHA Arg29 prevented its interaction with MDC1 and recruitment to sites of DNA damage. These results indicate that aprataxin is involved not only in single strand break repair but also in the processing of a subset of double strand breaks presumably through its interaction with MDC1
CK2 phosphorylation-dependent interaction between aprataxin and MDC1 in the DNA damage response
Aprataxin, defective in the neurodegenerative disorder ataxia oculomotor apraxia type 1, resolves abortive DNA ligation intermediates during DNA repair. Here, we demonstrate that aprataxin localizes at sites of DNA damage induced by high LET radiation and binds to mediator of DNA-damage checkpoint protein 1 (MDC1/NFBD1) through a phosphorylation-dependent interaction. This interaction is mediated via the aprataxin FHA domain and multiple casein kinase 2 di-phosphorylated S-D-T-D motifs in MDC1. X-ray structural and mutagenic analysis of aprataxin FHA domain, combined with modelling of the pSDpTD peptide interaction suggest an unusual FHA binding mechanism mediated by a cluster of basic residues at and around the canonical pT-docking site. Mutation of aprataxin FHA Arg29 prevented its interaction with MDC1 and recruitment to sites of DNA damage. These results indicate that aprataxin is involved not only in single strand break repair but also in the processing of a subset of double strand breaks presumably through its interaction with MDC1
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