Restroom Politics: Voices in the Stalls

Although mention of graffiti often conjures images of dirty subways or crumbling segments of the Berlin Wall, many people deal with graffiti in a seemingly much more private place every day-that found in the nearest restroom stall. This paper attempts to explore how many of the same techniques used to govern, and often eliminate, graffiti in public spaces have made their way into the privacy of restroom stalls. By labeling graffiti as dirty and subversive, society has found a way to eliminate the graffiti even before it has to be scrubbed off of the stall walls. This paper continues on to examine the consequences of these governing techniques and their implications for our liberal society

Hsp90: a specialized but essential protein-folding tool

Hsp90 is unique among molecular chaperones. The majority of its known substrates are signal transduction proteins, and recent work indicates that it uses a novel protein-folding strategy

Gemini NorthNIRI Spectra of Pluto and Charon: Simultaneous Analysis of the Surface and Atmosphere

94035We report on our analysis of blended Pluto and Charon spectra over the wavelength range 1.4 to 2.5 m as obtained by the NIRI instrument on Gemini North on June 25-28, 2004. The data have a resolving power () around 1500 and a SNR around 200 per pixel. The observed blended spectra are compared to models that combine absorption from the solid ice on the surface using Hapke theory, and absorption from the gaseous atmosphere. We assume the spectrum is a combination of several spatially separate spectral units: a CH4-rich ice unit, a volatile unit (an intimate mixture of N2, CH4 and CO), and a Charon unit (H2O, ammonia hydrate and kaolinite). We test for the presence of hydrocarbons (i.e. C2H6) and nitriles (i.e. HCN) and examine cases where additional ices are present as either pure separate spatial units, mixed with the CH4-rich unit or part of the volatile unit. We conclude that 2-4 of Plutos surface is covered with pure-C2H6 and our identification of C2H6 is significantly strengthened when absorption due to gaseous CH4 is included. The inclusion of Plutos atmosphere demonstrates that low-resolution, high-SNR observations are capable of detecting Plutos atmosphere during a time when Plutos atmosphere may have been undergoing rapid changes (1988-2002) and no high-resolution spectra were obtained. In particular, we identify features at 1.665 and 2.317 m as the Q-branch of the 23 and 3+4 bands of gaseous CH4, respectively. The later band is also evident in many previously published spectra of Pluto. Our analysis finds it is unnecessary to include 13CO to explain the depth of the 2.405 m, which has been previously suggested to be a spectral blended with C2H6, but we cannot definitively rule out its presence. Funding for this work (Cook) has been provided by a NASA-PATM grant

Inferring yeast cell cycle regulators and interactions using transcription factor activities

BACKGROUND: Since transcription factors are often regulated at the post-transcriptional level, their activities, rather than expression levels may provide valuable information for investigating functions and their interactions. The recently developed Network Component Analysis (NCA) and its generalized form (gNCA) provide a robust framework for deducing the transcription factor activities (TFAs) from various types of DNA microarray data and transcription factor-gene connectivity. The goal of this work is to demonstrate the utility of TFAs in inferring transcription factor functions and interactions in Saccharomyces cerevisiae cell cycle regulation. RESULTS: Using gNCA, we determined 74 TFAs from both wild type and fkh1 fkh2 deletion mutant microarray data encompassing 1529 ORFs. We hypothesized that transcription factors participating in the cell cycle regulation exhibit cyclic activity profiles. This hypothesis was supported by the TFA profiles of known cell cycle factors and was used as a basis to uncover other potential cell cycle factors. By combining the results from both cluster analysis and periodicity analysis, we recovered nearly 90% of the known cell cycle regulators, and identified 5 putative cell cycle-related transcription factors (Dal81, Hap2, Hir2, Mss11, and Rlm1). In addition, by analyzing expression data from transcription factor knockout strains, we determined 3 verified (Ace2, Ndd1, and Swi5) and 4 putative interaction partners (Cha4, Hap2, Fhl1, and Rts2) of the forkhead transcription factors. Sensitivity of TFAs to connectivity errors was determined to provide confidence level of these predictions. CONCLUSION: By subjecting TFA profiles to analyses based upon physiological signatures we were able to identify cell cycle related transcription factors consistent with current literature, transcription factors with potential cell cycle dependent roles, and interactions between transcription factors

Comparing Star Formation on Large Scales in the c2d Legacy Clouds: Bolocam 1.1 mm Dust Continuum Surveys of Serpens, Perseus, and Ophiuchus

We have undertaken an unprecedentedly large 1.1 millimeter continuum survey of three nearby star forming clouds using Bolocam at the Caltech Submillimeter Observatory. We mapped the largest areas in each cloud at millimeter or submillimeter wavelengths to date: 7.5 sq. deg in Perseus (Paper I), 10.8 sq. deg in Ophiuchus (Paper II), and 1.5 sq. deg in Serpens with a resolution of 31", detecting 122, 44, and 35 cores, respectively. Here we report on results of the Serpens survey and compare the three clouds. Average measured angular core sizes and their dependence on resolution suggest that many of the observed sources are consistent with power-law density profiles. Tests of the effects of cloud distance reveal that linear resolution strongly affects measured source sizes and densities, but not the shape of the mass distribution. Core mass distribution slopes in Perseus and Ophiuchus (alpha=2.1+/-0.1 and alpha=2.1+/-0.3) are consistent with recent measurements of the stellar IMF, whereas the Serpens distribution is flatter (alpha=1.6+/-0.2). We also compare the relative mass distribution shapes to predictions from turbulent fragmentation simulations. Dense cores constitute less than 10% of the total cloud mass in all three clouds, consistent with other measurements of low star-formation efficiencies. Furthermore, most cores are found at high column densities; more than 75% of 1.1 mm cores are associated with Av>8 mag in Perseus, 15 mag in Serpens, and 20-23 mag in Ophiuchus.Comment: 32 pages, including 18 figures, accepted for publication in Ap

Polymicrobial oral biofilm models: simplifying the complex

Over the past century, numerous studies have used oral biofilm models to investigate growth kinetics, biofilm formation, structure and composition, antimicrobial susceptibility and host–pathogen interactions. In vivo animal models provide useful models of some oral diseases; however, these are expensive and carry vast ethical implications. Oral biofilms grown or maintained in vitro offer a useful platform for certain studies and have the advantages of being inexpensive to establish and easy to reproduce and manipulate. In addition, a wide range of variables can be monitored and adjusted to mimic the dynamic environmental changes at different sites in the oral cavity, such as pH, temperature, salivary and gingival crevicular fluid flow rates, or microbial composition. This review provides a detailed insight for early-career oral science researchers into how the biofilm models used in oral research have progressed and improved over the years, their advantages and disadvantages, and how such systems have contributed to our current understanding of oral disease pathogenesis and aetiology