Observations of spatial flow patterns at the coral colony scale on a shallow reef flat

Although small-scale spatial flow variability can affect both larger-scale circulation patterns and biological processes on coral reefs, there are few direct measurements of spatial flow patterns across horizontal scales 1), had similarspatial patterns to wakes, while higher-frequency variations (0.05-0.1 Hz, KC<1) had no observable spatial structure. On the reef flat, both drag and inertial forces exerted by coral colonies could have significant effects on flow, but within different frequency ranges; drag dominates for low-frequency flow variations and inertial forces dominate for higher frequency variations, including the wave band. Our scaling analyses suggest that spatial flow patterns at colony and patch scales could have important implications or both physical and biological processes at larger reef scales through their effects on forces exerted on the flow, turbulent mixing, and dispersion. © 2013. American Geophysical Union. All Rights Reserved

Transient Tidal Circulation and Momentum Balances at a Shallow Inlet

An analysis of transient momentum balances is carried out to elucidate circulation, dynamics, and exchange mechanisms at shallow barotropic tidal inlets. Circulation is computed using a depth-integrated, fully nonlinear, time-stepping, finite-element model with variably spaced grids having horizontal resolution down to 50 m. Velocity and elevation fields from the model are used to directly evaluate the contribution of each term in the momentum equations to the overall momentum balance. A transformation of the x-y momentum terms into an s-n coordinate system is used to simplify the interpretation of the dynamics and provide vivid illustrations of the forces and resulting accelerations in the flow. The analysis is conducted for an idealized inlet and contrasted with a highly detailed model of Beaufort Inlet, North Carolina. Results show that momentum balances in the immediate vicinity of these inlets vary significantly in time and space and oscillate between two dynamical states. Near maximum ebb or flood, the alongstream momentum balances are dominated by advective acceleration, pressure gradient, and bottom friction. Cross-stream balances are dominated by centrifugal acceleration and pressure gradients. Near slack, balances more closely follow linear wave dynamics, with local accelerations balancing pressure gradients, and (to a lesser degree) Coriolis. Comparisons between the idealized inlet and Beaufort Inlet show broad similarities in these momentum balances. However, natural inlet geometry and bottom topography, as well as the tidal transmission characteristics of the sounds behind Beaufort Inlet produce strong asymmetries. Moreover, momentum balances are highly localized, often with subkilometer length scales. The dynamics are used to explain the physical mechanisms for inlet exchange. In particular, the results indicate that the cross-stream dynamics generate a ''wall'' along the length of an inlet during the stronger phases of the tide. The wall is established by opposing cross-inlet pressure gradients and centrifugal forces, and it poses a significant barrier to cross-inlet exchange during the stronger phases of the tide but is absent near slack

High frequency temperature variability reduces the risk of coral bleaching

Coral bleaching is the detrimental expulsion of algal symbionts from their cnidarian hosts, and predominantly occurs when corals are exposed to thermal stress. The incidence and severity of bleaching is often spatially heterogeneous within reef-scales (&lt;1 km), and is therefore not predictable using conventional remote sensing products. Here, we systematically assess the relationship between in situ measurements of 20 environmental variables, along with seven remotely sensed SST thermal stress metrics, and 81 observed bleaching events at coral reef locations spanning five major reef regions globally. We find that high-frequency temperature variability (i.e., daily temperature range) was the most influential factor in predicting bleaching prevalence and had a mitigating effect, such that a 1 °C increase in daily temperature range would reduce the odds of more severe bleaching by a factor of 33. Our findings suggest that reefs with greater high-frequency temperature variability may represent particularly important opportunities to conserve coral ecosystems against the major threat posed by warming ocean temperatures

Simulating social-ecological systems: the Island Digital Ecosystem Avatars (IDEA) consortium

Abstract Systems biology promises to revolutionize medicine, yet human wellbeing is also inherently linked to healthy societies and environments (sustainability). The IDEA Consortium is a systems ecology open science initiative to conduct the basic scientific research needed to build use-oriented simulations (avatars) of entire social-ecological systems. Islands are the most scientifically tractable places for these studies and we begin with one of the best known: Moorea, French Polynesia. The Moorea IDEA will be a sustainability simulator modeling links and feedbacks between climate, environment, biodiversity, and human activities across a coupled marine-terrestrial landscape. As a model system, the resulting knowledge and tools will improve our ability to predict human and natural change on Moorea and elsewhere at scales relevant to management/conservation actions

Wave-driven Circulation in a Coral Reef, Lagoon, and Pass System

国際共同シンポジウム: International Joint Symposium: Tropical Island Ecosystems and Sustainable Development (Moorea, French Polynesia), DATE:December 2-7, 2006, PLACE: Moorea, French Polynesia, CO-SPONSORS: Centre de Recherches Insulaires et Observatoire de l’Environnement (CRIOBE) / Richard B. Gump South Pacific Research Station (University of California Berkeley) / 21st COE Program of University of the Ryukyu

Towards Deeper Measurements of Tropical Reefscape Structure Using the WorldView-2 Spaceborne Sensor

Owing to the shallowness of waters, vast areas, and spatial complexity, reefscape mapping requires Digital Depth Models (DDM) at a fine scale but over large areas. Outperforming waterborne surveys limited by shallow water depths and costly airborne campaigns, recently launched satellite sensors, endowed with high spectral and very high spatial capabilities, can adequately address the raised issues. Doubling the number of spectral bands, the innovative eight band WorldView-2 (WV2) imagery is very susceptible to enhance the DDM retrieved from the traditional four band QuickBird-2 (QB2). Based on an efficiently recognized algorithm (ratio transform), resolving for the clear water bathymetry, we compared DDM derived from simulated QB2 with WV2 spectral combinations using acoustic ground-truthing in Moorea (French Polynesia). Three outcomes emerged from this study. Increasing spatial resolution from 2 to 0.5 m led to reduced agreement between modeled and &lt;em&gt;in situ&lt;/em&gt; water depths. The analytical atmospheric correction (FLAASH) provided poorer results than those derived without atmospheric correction and empirical dark object correction. The purple, green, yellow and NIR3 (WV2 1st-3rd-4th-8th bands) spectral combination, processed with the atmospheric correction at the 2 m resolution, furnished the most robust consistency with ground-truthing (30 m (&lt;em&gt;r &lt;/em&gt;= 0.65)), gaining 10 m of penetration relative to other spaceborne-derived bathymetric retrievals. The integration of the WV2-boosted bathymetry estimation into radiative transfer model holds great promise to frequently monitor the reefscape features at the colony-scale level

Curvature Dynamics of a Coastal Barotropic Outflow Jet on a Slope

&lt;p&gt;This repository contains .zip file of all of the ROMS simulations used to produce the results in a&nbsp;submitted manuscript. Each project directory (uploaded as a .zip) is named by the drag coefficient, bottom slope, and latitude for the particular simulation. The file structure and content within each directory is&lt;/p&gt;&lt;p&gt;-ocean.in #ROMS input file&lt;/p&gt;&lt;p&gt;-ana_drag.h #analytic depth-dependent quadratic drag formulation&lt;/p&gt;&lt;p&gt;-ana_fsobc.h #analytic free-surface open boundary condition&lt;/p&gt;&lt;p&gt;-ana_grid.h #analytic grid&lt;/p&gt;&lt;p&gt;-ana_m2obc.h #analytic depth-averaged open boundary condition&lt;/p&gt;&lt;p&gt;-ana_mask.h #analytic mask&lt;/p&gt;&lt;p&gt;-/results/ocean_avg_00360.nc #3-hour average of model fields on day 10 of the simulation&lt;/p&gt;&lt;p&gt;-/results/ocean_dia_00360.nc #3-hour average momentum diagnostics&nbsp;on day 10 of the simulation&lt;/p&gt;&lt;p&gt;-/results/path.nc #relevant variables interpolated to the jet centerline trajectory&lt;/p&gt;&lt;p&gt;COAWST is an open source code and can be download at https://coawstmodel-trac.sourcerepo.com/coawstmodel_COAWST/. Descriptions of the input and output files can be found in the manual distributed with the model code and in the glossary at the end of the ocean.in file.&lt;/p&gt;&lt;p&gt;Corresponding author: Walter Torres, [email protected]&lt;/p&gt