Morphological asymmetry and interspecific hybridization: A case study using hylid frogs

The limited studies addressing developmental stability of interspecific hybrids suggest a positive association between the level of fluctuating asymmetry and 1) the degree of divergence between parental species, and 2) the recency of the contact zone. To evaluate these associations, we examined asymmetry in a recentlyestablished hybrid population of treefrogs (Hyla cinerea and H. gratiosa) that show marked structural gene divergence. Fluctuating asymmetry (FA), directional asymmetry, and antisymmetry were assessed for eight paired osteometric traits in allozymically-defined parental and hybrid categories. FA levels varied considerably among traits. Nonetheless, for any given trait, the hybrid categories did not demonstrate elevated levels of FA compared to the parental categories, or compared to frogs from a non-hybridizing parental population. The only trait that differed statistically among categories (pterygoid length) involved a significantly lower FA value for the Fl hybrids. Thus, observed FA values do not support expectations that the hybrid categories should experience decreased developmental stability

Morphological asymmetry and interspecific hybridization: A case study using hylid frogs

The limited studies addressing developmental stability of interspecific hybrids suggest a positive association between the level of fluctuating asymmetry and 1) the degree of divergence between parental species, and 2) the recency of the contact zone. To evaluate these associations, we examined asymmetry in a recentlyestablished hybrid population of treefrogs (Hyla cinerea and H. gratiosa) that show marked structural gene divergence. Fluctuating asymmetry (FA), directional asymmetry, and antisymmetry were assessed for eight paired osteometric traits in allozymically-defined parental and hybrid categories. FA levels varied considerably among traits. Nonetheless, for any given trait, the hybrid categories did not demonstrate elevated levels of FA compared to the parental categories, or compared to frogs from a non-hybridizing parental population. The only trait that differed statistically among categories (pterygoid length) involved a significantly lower FA value for the Fl hybrids. Thus, observed FA values do not support expectations that the hybrid categories should experience decreased developmental stability

Validation and refinement of a plant indicator model for grand fir mortality by the fir engraver

A previously developed plant indicator model that estimates grand fir mortality by the fir engraver was tested in 7 grand fir stands. The observed and predicted mortality levels were similar in 5 of the test stands for trees killed during a 3-year period. A better statistical fit was achieved by refining the model and its parameters based on a combined set of data from the original and test stands

Synchronization and Control in Intrinsic and Designed Computation: An Information-Theoretic Analysis of Competing Models of Stochastic Computation

We adapt tools from information theory to analyze how an observer comes to synchronize with the hidden states of a finitary, stationary stochastic process. We show that synchronization is determined by both the process's internal organization and by an observer's model of it. We analyze these components using the convergence of state-block and block-state entropies, comparing them to the previously known convergence properties of the Shannon block entropy. Along the way, we introduce a hierarchy of information quantifiers as derivatives and integrals of these entropies, which parallels a similar hierarchy introduced for block entropy. We also draw out the duality between synchronization properties and a process's controllability. The tools lead to a new classification of a process's alternative representations in terms of minimality, synchronizability, and unifilarity.Comment: 25 pages, 13 figures, 1 tabl

Many Roads to Synchrony: Natural Time Scales and Their Algorithms

We consider two important time scales---the Markov and cryptic orders---that monitor how an observer synchronizes to a finitary stochastic process. We show how to compute these orders exactly and that they are most efficiently calculated from the epsilon-machine, a process's minimal unifilar model. Surprisingly, though the Markov order is a basic concept from stochastic process theory, it is not a probabilistic property of a process. Rather, it is a topological property and, moreover, it is not computable from any finite-state model other than the epsilon-machine. Via an exhaustive survey, we close by demonstrating that infinite Markov and infinite cryptic orders are a dominant feature in the space of finite-memory processes. We draw out the roles played in statistical mechanical spin systems by these two complementary length scales.Comment: 17 pages, 16 figures: http://cse.ucdavis.edu/~cmg/compmech/pubs/kro.htm. Santa Fe Institute Working Paper 10-11-02

A High-Density Linkage Map of the Ancestral Diploid Strawberry, Fragaria iinumae, Constructed with Single Nucleotide Polymorphism Markers from the IStraw90 Array and Genotyping by Sequencing

Fragaria iinumae Makino is recognized as an ancestor of the octoploid strawberry species, which includes the cultivated strawberry, Fragaria ×ananassa Duchesne ex Rozier. Here we report the construction of the first high-density linkage map for F. iinumae. The F. iinumae linkage map (Fii map) is based on two high-throughput techniques of single nucleotide polymorphism (SNP) genotyping: the IStraw90 Array (hereafter “Array”), and genotyping by sequencing (GBS). The F2 generation mapping population was derived by selfing F. iinumae hybrid F1D, the product of a cross between two divergent F. iinumae accessions collected from Hokkaido, Japan. The Fii map consists of seven linkage groups (LGs) and has an overall length of 451.7 cM as defined by 496 loci populated by 4173 markers: 3280 from the Array and 893 from GBS. Comparisons with two versions of the Fragaria vesca ssp. vesca L. ‘Hawaii 4’ pseudo-chromosome (PC) assemblies reveal substantial conservation of synteny and colinearity, yet identified differences that point to possible genomic divergences between F. iinumae and F. vesca, and/or to F. vesca genomic assembly errors. The Fii map provides a basis for anchoring a F. iinumae genome assembly as a prerequisite for constructing a second diploid reference genome for Fragaria

The TIGRE gamma-ray telescope

TIGRE is an advanced telescope for gamma-ray astronomy with a few arcmin resolution. From 0.3 to 10 MeV it is a Compton telescope. Above 1 MeV, its multi-layers of double sided silicon strip detectors allow for Compton recoil electron tracking and the unique determination for incident photon direction. From 10 to 100 MeV the tracking feature is utilized for gamma-ray pair event reconstruction. Here we present TIGRE energy resolutions, background simulations and the development of the electronics readout system

Morphological asymmetry and interspecific hybridization: A case study using hylid frogs

Abstract The limited studies addressing developmental stability of interspecific hybrids suggest a positive association between the level of fluctuating asymmetry and 1) the degree of divergence between parental species, and 2) the recency of the contact zone. To evaluate these associations, we examined asymmetry in a recentlyestablished hybrid population of treefrogs (Hyla cinerea and H. gratiosa) that show marked structural gene divergence. Fluctuating asymmetry (FA), directional asymmetry, and antisymmetry were assessed for eight paired osteometric traits in allozymically-defined parental and hybrid categories. FA levels varied considerably among traits. Nonetheless, for any given trait, the hybrid categories did not demonstrate elevated levels of FA compared to the parental categories, or compared to frogs from a non-hybridizing parental population. The only trait that differed statistically among categories (pterygoid length) involved a significantly lower FA value for the Fl hybrids. Thus, observed FA values do not support expectations that the hybrid categories should experience decreased developmental stability

Further Analyses of the Safety of Verubecestat in the Phase 3 EPOCH Trial of Mild-To-Moderate Alzheimer’s Disease

Background: Verubecestat, a BACE1 inhibitor that reduces Aβ levels in the cerebrospinal fluid of humans, was not effective in a phase 3 trial (EPOCH) of mild-to-moderate AD and was associated with adverse events. To assist in the development of BACE1 inhibitors, we report detailed safety findings from EPOCH. Methods: EPOCH was a randomized, double-blind, placebo-controlled 78-week trial evaluating verubecestat 12 mg and 40 mg in participants with mild-to-moderate AD diagnosed clinically. The trial was terminated due to futility close to its scheduled completion. Of 1957 participants who were randomized and took treatment, 652 were assigned to verubecestat 12 mg, 652 to verubecestat 40 mg, and 653 to placebo. Adverse events and relevant laboratory, vital sign, and ECG findings were assessed. Results: Verubecestat 12 mg and 40 mg were associated with an increase in the percentage of participants reporting adverse events versus placebo (89 and 92% vs. 82%), although relatively few participants discontinued treatment due to adverse events (8 and 9% vs. 6%). Adverse events that were increased versus placebo included falls and injuries, suicidal ideation, weight loss, sleep disturbance, rash, and hair color change. Most were mild to moderate in severity. Treatment differences in suicidal ideation emerged within the first 3 months but did not appear to increase after 6 months. In contrast, treatment differences in falls and injuries continued to increase over time. Conclusions: Verubecestat was associated with increased risk for several types of adverse events. Falls and injuries were notable for progressive increases over time. While the mechanisms underlying the increased adverse events are unclear, they may be due to BACE inhibition and should be considered in future clinical development programs of BACE1 inhibitors

Validation and refinement of a plant indicator model for grand fir mortality by the fir engraver

A previously developed plant indicator model that estimates grand fir mortality by the fir engraver was tested in 7 grand fir stands. The observed and predicted mortality levels were similar in 5 of the test stands for trees killed during a 3-year period. A better statistical fit was achieved by refining the model and its parameters based on a combined set of data from the original and test stands