Similarity of maize seed number responses for a diverse set of sites

Accurate modeling of maize (Zea mays L.) yields in diverse environments requires realistic simulation of seed numbers. Response of maize seed number to growth or light interception soon after pollination has been described with different types of functions. The objective of this study was to compare maize seed number responses to intercepted solar radiation or growth with data from a diverse set of sites. Pioneer hybrid 3394 planted near Temple, TX in 1999 at 2.5 to 20 plants$\cdot$m$^{-2}$ showed a linear function for seed number responses to light intercepted per plant in the 11 d following silking and to ear growth rate in these 11 d. Similar linear seed number responses were found for three hybrids in Canada at 4 to 13 plants$\cdot$m$^{-2}$. Likewise, the function for Pioneer 3394 in Temple was found to be similar to a regression for the same hybrid grown in Pennsylvania, and was similar to a function developed in Kenya. Thus, under the diverse environmental conditions of these studies, linear seed number functions appeared reasonable at these sites. Such seed number functions are critical to the understanding of optimization of planting density to maximum seed production per unit ground area. In the absence of drought stress, the optimum density will be the minimum planting density which could attain near-complete light interception at silking. As the probability of drought stress increases due to decreased soil water holding capacity or decreased expected rainfall, the optimum density would decrease accordingly.Similarité des réponses du nombre de grains par épi de maïs pour un jeu de sites variés. La modélisation précise des rendements du maïs (Zea mays L.) dans divers environnements nécessite une simulation réaliste du nombre de grains par épi. La réponse du nombre de grains à la croissance ou à l'interception de la lumière aussitôt après la pollinisation a été décrite avec différents types de fonctions. L'objectif de cette étude était de comparer les réponses du nombre de grains par épi au rayonnement solaire intercepté ou à la croissance de l'épi avec les données provenant d'un ensemble de sites variés. L'hybride Pioneer 3394 planté près de Temple (Texas, USA) en 1999 avec 2,5 à 20 plants$\cdot$m$^2$ a montré une relation linéaire entre le nombre de grains et la lumière interceptée durant les 11 jours qui ont suivi la sortie des soies ainsi qu'avec le taux de croissance de l'épi durant ces mêmes 11 jours. Des réponses linéaires similaires ont été trouvées pour trois hybrides au Canada avec 4 à 13 plants$\cdot$m$^2$. De même, la relation pour Pioneer 3394 à Temple a été trouvée similaire à celle obtenue pour le même hybride cultivé en Pennsylvanie ainsi qu'au Kenya. Ainsi, sous diverses conditions d'environnement de ces études, une relation linéaire avec le nombre de grains apparaît comme raisonnable dans ces sites. De telles relations linéaires avec le nombre de grains sont critiques pour appréhender l'optimisation de la densité de plantation afin d'atteindre le maximum de production de grains par unité de surface de sol. En l'absence de stress dû à la sécheresse, la densité optimale sera la densité de plantation minimale qui permettrait d'atteindre l'interception pratiquement complète du rayonnement au moment de la sortie des soies. Comme la probabilité de stress hydrique augmente avec la décroissance de la capacité de rétention en eau du sol ou décroît avec les précipitations escomptées, la densité optimale devra décroître en tenant compte de ces facteurs

Preplant 1,3-D treatments test well for perennial crop nurseries, but challenges remain

Preplant fumigation with methyl bromide commonly is used in open-field perennial crop nurseries in California for control of plant-parasitic nematodes, pathogens and weeds. Because this fumigant is being phased out, alternatives are needed to ensure the productivity of the perennial crop nursery industry as well as the ornamental, orchard and vineyard production systems that depend on clean planting stock. As part of the USDA Area-Wide Pest Management Program for Integrated Methyl Bromide Alternatives, several perennial crop nursery projects were conducted in California from 2007 to 2011 to test and demonstrate registered alternative fumigants and application techniques that maximize performance and minimize environmental impacts. The project was designed to evaluate shank application and soil surface sealing methods intended to reduce aboveground emission and improve soil performance of 1,3-dichloropropene, a leading methyl bromide alternative for nurseries. In these garden rose and tree nursery experiments, 1,3-dichloropropene treatments performed well regardless of application techniques. In this article, we highlight recent research and discuss the significance and remaining challenges for adoption of methyl bromide alternatives in this unique nursery stock production system

A Glutamic Acid-Rich Protein Identified in Verticillium dahliae from an Insertional Mutagenesis Affects Microsclerotial Formation and Pathogenicity

Verticillium dahliae Kleb. is a phytopathogenic fungus that causes wilt disease in a wide range of crops, including cotton. The life cycle of V. dahliae includes three vegetative phases: parasitic, saprophytic and dormant. The dormant microsclerotia are the primary infectious propagules, which germinate when they are stimulated by root exudates. In this study, we report the first application of Agrobacterium tumefaciens-mediated transformation (ATMT) for construction of insertional mutants from a virulent defoliating isolate of V. dahliae (V592). Changes in morphology, especially a lack of melanized microsclerotia or pigmentation traits, were observed in mutants. Together with the established laboratory unimpaired root dip-inoculation approach, we found insertional mutants to be affected in their pathogenicities in cotton. One of the genes tagged in a pathogenicity mutant encoded a glutamic acid-rich protein (VdGARP1), which shared no significant similarity to any known annotated gene. The vdgarp1 mutant showed vigorous mycelium growth with a significant delay in melanized microsclerotial formation. The expression of VdGARP1 in the wild type V529 was organ-specific and differentially regulated by different stress agencies and conditions, in addition to being stimulated by cotton root extract in liquid culture medium. Under extreme infertile nutrient conditions, VdGARP1 was not necessary for melanized microsclerotial formation. Taken together, our data suggest that VdGARP1 plays an important role in sensing infertile nutrient conditions in infected cells to promote a transfer from saprophytic to dormant microsclerotia for long-term survival. Overall, our findings indicate that insertional mutagenesis by ATMT is a valuable tool for the genome-wide analysis of gene function and identification of pathogenicity genes in this important cotton pathogen

Iron Regulation of the Major Virulence Factors in the AIDS-Associated Pathogen Cryptococcus neoformans

Iron overload is known to exacerbate many infectious diseases, and conversely, iron withholding is an important defense strategy for mammalian hosts. Iron is a critical cue for Cryptococcus neoformans because the fungus senses iron to regulate elaboration of the polysaccharide capsule that is the major virulence factor during infection. Excess iron exacerbates experimental cryptococcosis and the prevalence of this disease in Sub-Saharan Africa has been associated with nutritional and genetic aspects of iron loading in the background of the HIV/AIDS epidemic. We demonstrate that the iron-responsive transcription factor Cir1 in Cr. neoformans controls the regulon of genes for iron acquisition such that cir1 mutants are “blind” to changes in external iron levels. Cir1 also controls the known major virulence factors of the pathogen including the capsule, the formation of the anti-oxidant melanin in the cell wall, and the ability to grow at host body temperature. Thus, the fungus is remarkably tuned to perceive iron as part of the disease process, as confirmed by the avirulence of the cir1 mutant; this characteristic of the pathogen may provide opportunities for antifungal treatment

Replication and Recombination Factors Contributing to Recombination-Dependent Bypass of DNA Lesions by Template Switch

Damage tolerance mechanisms mediating damage-bypass and gap-filling are crucial for genome integrity. A major damage tolerance pathway involves recombination and is referred to as template switch. Template switch intermediates were visualized by 2D gel electrophoresis in the proximity of replication forks as X-shaped structures involving sister chromatid junctions. The homologous recombination factor Rad51 is required for the formation/stabilization of these intermediates, but its mode of action remains to be investigated. By using a combination of genetic and physical approaches, we show that the homologous recombination factors Rad55 and Rad57, but not Rad59, are required for the formation of template switch intermediates. The replication-proficient but recombination-defective rfa1-t11 mutant is normal in triggering a checkpoint response following DNA damage but is impaired in X-structure formation. The Exo1 nuclease also has stimulatory roles in this process. The checkpoint kinase, Rad53, is required for X-molecule formation and phosphorylates Rad55 robustly in response to DNA damage. Although Rad55 phosphorylation is thought to activate recombinational repair under conditions of genotoxic stress, we find that Rad55 phosphomutants do not affect the efficiency of X-molecule formation. We also examined the DNA polymerase implicated in the DNA synthesis step of template switch. Deficiencies in translesion synthesis polymerases do not affect X-molecule formation, whereas DNA polymerase δ, required also for bulk DNA synthesis, plays an important role. Our data indicate that a subset of homologous recombination factors, together with DNA polymerase δ, promote the formation of template switch intermediates that are then preferentially dissolved by the action of the Sgs1 helicase in association with the Top3 topoisomerase rather than resolved by Holliday Junction nucleases. Our results allow us to propose the choreography through which different players contribute to template switch in response to DNA damage and to distinguish this process from other recombination-mediated processes promoting DNA repair

Data collection for cooperative water resources modeling in the Lower Rio Grande Basin, Fort Quitman to the Gulf of Mexico.

Water resource scarcity around the world is driving the need for the development of simulation models that can assist in water resources management. Transboundary water resources are receiving special attention because of the potential for conflict over scarce shared water resources. The Rio Grande/Rio Bravo along the U.S./Mexican border is an example of a scarce, transboundary water resource over which conflict has already begun. The data collection and modeling effort described in this report aims at developing methods for international collaboration, data collection, data integration and modeling for simulating geographically large and diverse international watersheds, with a special focus on the Rio Grande/Rio Bravo. This report describes the basin, and the data collected. This data collection effort was spatially aggregated across five reaches consisting of Fort Quitman to Presidio, the Rio Conchos, Presidio to Amistad Dam, Amistad Dam to Falcon Dam, and Falcon Dam to the Gulf of Mexico. This report represents a nine-month effort made in FY04, during which time the model was not completed

Vertical distribution of sclerotia of Phymatotrichum omnivorum (Shear) Duggar relative to soil chemical and physical properties

Due to the character of the original source materials and the nature of batch digitization, quality control issues may be present in this document. Please report any quality issues you encounter to [email protected], referencing the URI of the item.Bibliography: leaves 42-44.Not availabl

Effect of Long-Term Continuous Fumigation on Soil Microbial Communities

High value crop producers in California rely heavily on soil fumigation to control a wide array of soil borne pests including nematodes, pathogens and weeds. Fumigants with broad biocidal activity can affect soil microbial communities that contribute to nutrient cycling and plant nutrient uptake which can impact soil health. It is often thought that soil microbial communities make a relatively rapid recovery following fumigation. However, recently it has been found that repeated application of fumigants over time can have greater and longer lasting impacts on soil microorganisms than single fumigation events. Therefore, the main objective of this study was to determine the effect of long-term repeated application of fumigants on soil microbial communities and compare them with non-fumigated and organic sites. Soil samples were collected from fields in Watsonville, CA. Chronosequence sites were defined by number of years of annual fumigation (yaf) with methyl bromide (15, 26, 33, 39 yaf) at the time of sampling, and representative non-fumigated sites were also included for comparison. Phospholipid fatty acid (PLFA) analysis was used to analyze the samples. The canonical variate analysis showed that microbial communities in sites with a longer history of fumigation (33 and 39 yaf) were similar to one another; however, they differed significantly from 15 yaf site and further analysis concluded that non-fumigated sites were significantly different than fumigated sites. This study showed that the proportion of arbuscular mycorrhizal fungi (AMF) was lower in all fumigated (15, 33 and 39 yaf) sites as compared to their non-fumigated counterparts, which could be a threat to sustainability since AMF plays a major role in soil health and quality

Soil Microbial Community Structure and Target Organisms under Different Fumigation Treatments

Producers of several high-value crops in California rely heavily on soil fumigants to control key diseases, nematodes, and weeds. Fumigants with broad biocidal activity can affect both target and nontarget soil microorganisms. The ability of nontarget soil microorganisms to recover after fumigation treatment is critical because they play an important role in sustaining the health of agricultural and natural soil systems. Fumigation trial was conducted in Parlier, CA, and the study focuses on the effects of different rates of Telone C35 and also methyl bromide fumigation with polyethylene (PE) and totally impermeable film (TIF) tarps on target and nontarget soil microorganisms using field samples. Results indicated that the populations of target organisms, such as Fusarium oxysporum and Pythium spp., were reduced at all rates of fumigants. Phospholipid fatty acid (PLFA) analysis indicated that all major nontarget soil microbial groups such as Gram positive bacteria, Gram negative bacteria, fungi, and arbuscular mycorrhizal fungi (AMF) were affected by methyl bromide (MeBr) fumigation treatment. In general, the effects of Telone C35 (299 L/ha) under PE tarp had the least impact on microbial community structure and better effect on controlling target microorganisms and, therefore, indicated the better option among fumigation treatments