Special Characteristics of Concurrent Engineering Studies dealing with Cubesat missions and their impact on the CE process

The continuously growing commercial and scientific relevance of nanosatellite missions, especially Cubesats, is clearly discernible in the space community. Due to this, it is important to analyse the special characteristics and demands of early phase studies for such missions to consider them in the Concurrent Engineering Facility (CEF), DLR Bremen’s system analysis laboratory. Within such studies, various differences have been observed which make it necessary to adapt the established CE process for study preparation, conduction and post-processing to meet the specific demands of these well-constrained systems, and thereby create the optimal study results together with the design team. On the design level, the major differences can mainly be traced to two closely connected peculiarities of CubeSat design. First, the targeted system is strictly limited in size, mass and form factor by the associated standard. Because of this, and the growing acceptance of Cubesats, a wide set of highly integrated COTS components and complete subsystems exists on the market with detailed datasheets, and even 3D models freely available on the internet. Secondly, this pool of applicable hardware increases the level of detail the study team has to deal with in a CE study, sometimes even down to connector and harness layout. In a nutshell, the process of CE studies has to be adapted for these small systems towards a later-phase like level of detail, while preserving the creative and efficient way of solution finding traditionally associated with the CE process, including known benefits such as time and cost savings, and design quality improvement. Based on conducted CE studies for CubeSat missions, this paper points to some of the most noticeable and important lessons learnt and derives suggestions for possible process adaptations. One of a CE study’s team leader’s main tasks is to make sure the design process is followed in the most efficient way possible. However, different activities or designs require at times a different approach and ad hoc modifications to the traditional CE process. Starting with the findings from the Cubesat experience, it becomes more and more obvious that the proven process and work approach has to be adapted not only depending on the type of activity conducted in the CEF but also on the design team’s background and composition. To exemplify this, the differences for “regular” and CubeSat studies, plus less strictly defined moderated workshops, are analysed in this paper with a special focus on the most promising particular respective communication and guidance styles of the team leaders, as experienced in the CEF

3D Surface Reconstruction of Plant Seeds by Volume Carving: Performance and Accuracies

We describe a method for 3D reconstruction of plant seed surfaces, focusing on small seeds with diameters as small as 200 μm. The method considers robotized systems allowing single seed handling in order to rotate a single seed in front of a camera. Even though such systems feature high position repeatability, at sub-millimeter object scales, camera pose variations have to be compensated. We do this by robustly estimating the tool center point from each acquired image. 3D reconstruction can then be performed by a simple shape-from-silhouette approach. In experiments we investigate runtimes, theoretically achievable accuracy, experimentally achieved accuracy, and show as a proof of principle that the proposed method is well sufficient for 3D seed phenotyping purposes

Root-root interactions: extending our perspective to be more inclusive of the range of theories in ecology and agriculture using in-vivo analyses

Background There is a large body of literature on competitive interactions among plants, but many studies have only focused on above-ground interactions and little is known about root-root dynamics between interacting plants. The perspective on possible mechanisms that explain the outcome of root-root interactions has recently been extended to include non-resource-driven mechanisms (as well as resource-driven mechanisms) of root competition and positive interactions such as facilitation. These approaches have often suffered from being static, partly due to the lack of appropriate methodologies for in-situ non-destructive root characterization. Scope Recent studies show that interactive effects of plant neighbourhood interactions follow non-linear and non-additive paths that are hard to explain. Common outcomes such as accumulation of roots mainly in the topsoil cannot be explained solely by competition theory but require a more inclusive theoretical, as well as an improved methodological framework. This will include the question of whether we can apply the same conceptual framework to crop versus natural species. Conclusions The development of non-invasive methods to dynamically study root-root interactions in vivo will provide the necessary tools to study a more inclusive conceptual framework for root-root interactions. By following the dynamics of root-root interactions through time in a whole range of scenarios and systems, using a wide variety of non-invasive methods, (such as fluorescent protein which now allows us to separately identify the roots of several individuals within soil), we will be much better equipped to answer some of the key questions in root physiology, ecology and agronom

11C-PET imaging reveals transport dynamics and sectorial plasticity of oak phloem after girdling

Carbon transport processes in plants can be followed non-invasively by repeated application of the short-lived positron-emitting radioisotope (11)C, a technique which has rarely been used with trees. Recently, positron emission tomography (PET) allowing 3D visualization has been adapted for use with plants. To investigate the effects of stem girdling on the flow of assimilates, leaves on first order branches of two-year-old oak (Quercus robur L.) trees were labeled with (11)C by supplying (11)CO2-gas to a leaf cuvette. Magnetic resonance imaging gave an indication of the plant structure, while PET registered the tracer flow in a stem region downstream from the labeled branches. After repeated pulse labeling, phloem translocation was shown to be sectorial in the stem: leaf orthostichy determined the position of the phloem sieve tubes containing labeled (11)C. The observed pathway remained unchanged for days. Tracer time-series derived from each pulse and analysed with a mechanistic model showed for two adjacent heights in the stem a similar velocity but different loss of recent assimilates. With either complete or partial girdling of bark within the monitored region, transport immediately stopped and then resumed in a new location in the stem cross-section, demonstrating the plasticity of sectoriality. One day after partial girdling, the loss of tracer along the interrupted transport pathway increased, while the velocity was enhanced in a non-girdled sector for several days. These findings suggest that lateral sugar transport was enhanced after wounding by a change in the lateral sugar transport path and the axial transport resumed with the development of new conductive tissue.We thank the Research Foundation – Flanders (FWO) for the PhD funding granted to Veerle De Schepper, the scientific research committee (CWO) of the Faculty of bioscience engineering (UGent) to support the research visit of Veerle De Schepper at the Forschungszentrum Jülich and the Special Research Fund (B.O.F.) of Ghent University for the post-doc funding granted to Veerle De Schepper

Read-out electronics for digital silicon photomultiplier modules

A new kind of a PET-Scanner (PET = positron emission tomography) for plant research is developed asa joint project of the Forschungszentrum Jülich and Philips Digital Photon Counting (PDPC). Thisscanner will utilize digital silicon photomultiplier (dSiPM) for plant phenotyping for the very first time.The goal of this work is to get a further knowledge of the operation of digital silicon photomultiplier.On this account a test-facility for this new photo detectors has been installed at the central instituteof engineering, electronics and analytics (ZEA-2 electronic systems) to determine the usage of thissensors, having regard to use them as scintillation detectors in a PET-Scanner later on.This work has its focus on the development of a fast read-out electronic for the used photo sensorsDPC3200-22-44. As there will be high data rates a fast USB 3.0 interface has been used. All thenecessary processing and data handling has been implemented in a state of the art FPGA

Quantitative 3D Analysis of Plant Roots Growing in Soil Using Magnetic Resonance Imaging

Precise measurements of root system architecture traits are an important requirement for plant phenotyping. Most of the current methods for analyzing root growth require either artificial growing conditions (e.g. hydroponics), are severely restricted in the fraction of roots detectable (e.g. rhizotrons), or are destructive (e.g. soil coring). On the other hand, modalities such as magnetic resonance imaging (MRI) are noninvasive and allow high-quality three-dimensional imaging of roots in soil. Here, we present a plant root imaging and analysis pipeline using MRI together with an advanced image visualization and analysis software toolbox named NMRooting. Pots up to 117 mm in diameter and 800 mm in height can be measured with the 4.7 T MRI instrument used here. For 1.5 l pots (81 mm diameter, 300 mm high), a fully automated system was developed enabling measurement of up to 18 pots per day. The most important root traits that can be nondestructively monitored over time are root mass, length, diameter, tip number, and growth angles (in two-dimensional polar coordinates) and spatial distribution. Various validation measurements for these traits were performed, showing that roots down to a diameter range between 200 μm and 300 μm can be quantitatively measured. Root fresh weight correlates linearly with root mass determined by MRI. We demonstrate the capabilities of MRI and the dedicated imaging pipeline in experimental series performed on soil-grown maize (Zea mays) and barley (Hordeum vulgare) plants

phenoPET: A dedicated PET Scanner for Plant Research based on digital SiPMs

In the frame of the German Plant Phenotyping Project (DPPN) we developed a novel PET scanner. In contrary to a clinical or preclinical PET scanner the detector rings of the Plant System are oriented in a horizontal plane. The final system will be equipped with three rings covering a Field of View (FOV) of 18 cm diameter and 20 cm axial height. One detector ring is formed by 12 modules. Each module contains four 8×8 pixel digital SiPM devices DPC-3200-22-44 (Philips Digital Photon Counting) connected to a PCB and four scintillator matrices with 16×16 individual LYSO scintillators. Crystal size is 1.85×1.85×10 mm3. The matrices are composed with both reflective and transparent contact faces between the crystals in order to optimize crystal identification. A cooling system keeps the detectors below 5°C and limits the dark count rate. Data are already preprocessed by the Cyclone FPGA (Altera) in the module and transmitted from there at 50MiB/s to the base board. The base board collects the data from all modules and allows coincidence detection performed on a Kintex-7 FPGA (Xilinx). Finally the data link to the computer system for image reconstruction is realized via an USB 3.0 connection. Due to the fast photodetectors the system is dedicated to work with rather high activities. Preliminary measurements showed a coincidence peak of 250 ps FWHM between two detector elements and an energy resolution ΔE/E = 12%. This paper will present first results from a one ring system with a FOV of 18 cm diameter and 6.5 cm axial height