Interference and k-point sampling in the supercell approach to phase-coherent transport

We present a systematic study of interference and k-point sampling effects in the supercell approach to phase-coherent electron transport. We use a representative tight-binding model to show that interference between the repeated images is a small effect compared to the error introduced by using only the Gamma-point for a supercell containing (3,3) sites in the transverse plane. An insufficient k-point sampling can introduce strong but unphysical features in the transmission function which can be traced to the presence of van Hove singularities in the lead. We present a first-principles calculation of the transmission through a Pt contact which shows that the k-point sampling is also important for realistic systems.Comment: 4 pages, 5 figures. Accepted for Phys. Rev. B (Brief Report

Four-atom period in the conductance of monatomic Al wires

We present first principles calculations based on density functional theory for the conductance of monatomic Al wires between Al(111) electrodes. In contrast to the even-odd oscillations observed in other metallic wires, the conductance of the Al wires is found to oscillate with a period of 4 atoms as the length of the wire is varied. Although local charge neutrality can account for the observed period it leads to an incorrect phase. We explain the conductance behavior using a resonant transport model based on the electronic structure of the infinite wire.Comment: 4 pages, 5 figure

Forces and conductances in a single-molecule bipyridine junction

Inspired by recent measurements of forces and conductances of bipyridine nano-junctions, we have performed density functional theory calculations of structure and electron transport in a bipyridine molecule attached between gold electrodes for seven different contact geometries. The calculations show that both the bonding force and the conductance are sensitive to the surface structure, and that both properties are in good agreement with experiment for contact geometries characterized by intermediate coordination of the metal atoms corresponding to a stepped surface. The conductance is mediated by the lowest unoccupied molecular orbital, which can be illustrated by a quantitative comparison with a one-level model. Implications for the interpretation of the experimentally determined force and conductance distributions are discussed

Fully selfconsistent GW calculations for molecules

We calculate single-particle excitation energies for a series of 33 molecules using fully selfconsistent GW, one-shot G$_0$W$_0$, Hartree-Fock (HF), and hybrid density functional theory (DFT). All calculations are performed within the projector augmented wave (PAW) method using a basis set of Wannier functions augmented by numerical atomic orbitals. The GW self-energy is calculated on the real frequency axis including its full frequency dependence and off-diagonal matrix elements. The mean absolute error of the ionization potential (IP) with respect to experiment is found to be 4.4, 2.6, 0.8, 0.4, and 0.5 eV for DFT-PBE, DFT-PBE0, HF, G$_0$W$_0$[HF], and selfconsistent GW, respectively. This shows that although electronic screening is weak in molecular systems its inclusion at the GW level reduces the error in the IP by up to 50% relative to unscreened HF. In general GW overscreens the HF energies leading to underestimation of the IPs. The best IPs are obtained from one-shot G$_0$W$_0$ calculations based on HF since this reduces the overscreening. Finally, we find that the inclusion of core-valence exchange is important and can affect the excitation energies by as much as 1 eV.Comment: 10 pages, 5 figure

Functional agrobiodievrsity - a novel approach to optimize pest control in fruit production

Functional agrobiodiversity was implemented in organic apple orchards in Denmark, by perennial flower strips. Two techniques were tested with the purpose of enhancing natural enemies and reducing damage of the rosy apple aphid

Rate theory for correlated processes: Double-jumps in adatom diffusion

We study the rate of activated motion over multiple barriers, in particular the correlated double-jump of an adatom diffusing on a missing-row reconstructed Platinum (110) surface. We develop a Transition Path Theory, showing that the activation energy is given by the minimum-energy trajectory which succeeds in the double-jump. We explicitly calculate this trajectory within an effective-medium molecular dynamics simulation. A cusp in the acceptance region leads to a sqrt{T} prefactor for the activated rate of double-jumps. Theory and numerical results agree

Conduction Mechanism in a Molecular Hydrogen Contact

We present first principles calculations for the conductance of a hydrogen molecule bridging a pair of Pt electrodes. The transmission function has a wide plateau with T~1 which extends across the Fermi level and indicates the existence of a single, robust conductance channel with nearly perfect transmission. Through a detailed Wannier function analysis we show that the H2 bonding state is not involved in the transport and that the plateau forms due to strong hybridization between the H2 anti-bonding state and states on the adjacent Pt atoms. The Wannier functions furthermore allow us to derive a resonant-level model for the system with all parameters determined from the fully self-consistent Kohn-Sham Hamiltonian.Comment: 5 pages, 4 figure

Unbiased sampling of globular lattice proteins in three dimensions

We present a Monte Carlo method that allows efficient and unbiased sampling of Hamiltonian walks on a cubic lattice. Such walks are self-avoiding and visit each lattice site exactly once. They are often used as simple models of globular proteins, upon adding suitable local interactions. Our algorithm can easily be equipped with such interactions, but we study here mainly the flexible homopolymer case where each conformation is generated with uniform probability. We argue that the algorithm is ergodic and has dynamical exponent z=0. We then use it to study polymers of size up to 64^3 = 262144 monomers. Results are presented for the effective interaction between end points, and the interaction with the boundaries of the system

An Economic and Environmental Analysis of Slurry Separation

With increased pressure to redistribute animal manure in order to lower the environmental pressure from agriculture, it seems obvious to consider processing slurry into nutrient rich fractions which can easily be transported. In this paper, an overall analysis of four different separation technologies is presented. The four technologies are Decanter, Funki Manura 2000, Green Farm Energy and Staring. These technologies are all implemented on a full scale in Denmark. In this paper both the economic and environmental aspects are considered, looking at the entire chain from stable to the field. The total investments range from 50,000 to 4 million Euros and the total net costs are from 1 to 7 Euros per tonne for the four different technologies. One of the clear environmental benefits is a better utilisation of phosphorus, but using phytase in feeding is a cheaper first step when reducing phosphorus surplus. Improved nitrogen utilisation is only apparent with the Staring and Green Farm Energy concepts. The conclusion is that the Funki Manura 2000 system is too expensive and the Decanter system a fairly cheap way to reduce phosphorus levels, but other benefits are limited. Staring and Green Farm Energy show the greatest potential, but these systems have not been running long enough to validate the expected results included in this paper.Resource /Energy Economics and Policy,