Changes in carbon electrode morphology affect microbial fuel cell performance with Shewanella oneidensis MR-1

The formation of biofilm-electrodes is crucial for microbial fuel cell current production because optimal performance is often associated with thick biofilms. However, the influence of the electrode structure and morphology on biofilm formation is only beginning to be investigated. This study provides insight on how changing the electrode morphology affects current production of a pure culture of anode-respiring bacteria. Specifically, an analysis of the effects of carbon fiber electrodes with drastically different morphologies on biofilm formation and anode respiration by a pure culture (Shewanella oneidensis MR-1) were examined. Results showed that carbon nanofiber mats had -10 fold higher current than plain carbon microfiber paper and that the increase was not due to an increase in electrode surface area, conductivity, or the size of the constituent material. Cyclic voltammograms reveal that electron transfer from the carbon nanofiber mats was biofilm-based suggesting that decreasing the diameter of the constituent carbon material from a few microns to a few hundred nanometers is beneficial for electricity production solely because the electrode surface creates a more relevant mesh for biofilm formation by Shewanella oneidensis MR-1

Electrophysiological Signatures of Spatial Boundaries in the Human Subiculum.

Environmental boundaries play a crucial role in spatial navigation and memory across a wide range of distantly related species. In rodents, boundary representations have been identified at the single-cell level in the subiculum and entorhinal cortex of the hippocampal formation. Although studies of hippocampal function and spatial behavior suggest that similar representations might exist in humans, boundary-related neural activity has not been identified electrophysiologically in humans until now. To address this gap in the literature, we analyzed intracranial recordings from the hippocampal formation of surgical epilepsy patients (of both sexes) while they performed a virtual spatial navigation task and compared the power in three frequency bands (1-4, 4-10, and 30-90 Hz) for target locations near and far from the environmental boundaries. Our results suggest that encoding locations near boundaries elicited stronger theta oscillations than for target locations near the center of the environment and that this difference cannot be explained by variables such as trial length, speed, movement, or performance. These findings provide direct evidence of boundary-dependent neural activity localized in humans to the subiculum, the homolog of the hippocampal subregion in which most boundary cells are found in rodents, and indicate that this system can represent attended locations that rather than the position of one\u27s own body

The Antarctic Submillimeter Telescope and Remote Observatory (AST/RO)

AST/RO, a 1.7 m diameter telescope for astronomy and aeronomy studies at wavelengths between 200 and 2000 microns, was installed at the South Pole during the 1994-1995 Austral summer. The telescope operates continuously through the Austral winter, and is being used primarily for spectroscopic studies of neutral atomic carbon and carbon monoxide in the interstellar medium of the Milky Way and the Magellanic Clouds. The South Pole environment is unique among observatory sites for unusually low wind speeds, low absolute humidity, and the consistent clarity of the submillimeter sky. Four heterodyne receivers, an array receiver, three acousto-optical spectrometers, and an array spectrometer are installed. A Fabry-Perot spectrometer using a bolometric array and a Terahertz receiver are in development. Telescope pointing, focus, and calibration methods as well as the unique working environment and logistical requirements of the South Pole are described.Comment: 57 pages, 15 figures. Submitted to PAS

Cluster M Mycobacteriophages Bongo, PegLeg, and Rey with Unusually Large Repertoires of tRNA Isotopes

Genomic analysis of a large set of phages infecting the common hostMycobacterium smegmatis mc2155 shows that they span considerable genetic diversity. There are more than 20 distinct types that lack nucleotide similarity with each other, and there is considerable diversity within most of the groups. Three newly isolated temperate mycobacteriophages, Bongo, PegLeg, and Rey, constitute a new group (cluster M), with the closely related phages Bongo and PegLeg forming subcluster M1 and the more distantly related Rey forming subcluster M2. The cluster M mycobacteriophages have siphoviral morphologies with unusually long tails, are homoimmune, and have larger than average genomes (80.2 to 83.7 kbp). They exhibit a variety of features not previously described in other mycobacteriophages, including noncanonical genome architectures and several unusual sets of conserved repeated sequences suggesting novel regulatory systems for both transcription and translation. In addition to containing transfer-messenger RNA and RtcB-like RNA ligase genes, their genomes encode 21 to 24 tRNA genes encompassing complete or nearly complete sets of isotypes. We predict that these tRNAs are used in late lytic growth, likely compensating for the degradation or inadequacy of host tRNAs. They may represent a complete set of tRNAs necessary for late lytic growth, especially when taken together with the apparent lack of codons in the same late genes that correspond to tRNAs that the genomes of the phages do not obviously encode

Quality controls, bias, and seasonality of CO2columns in the boreal forest with Orbiting Carbon Observatory-2, Total Carbon Column Observing Network, and EM27/SUN measurements

Seasonal CO$_{2}$ exchange in the boreal forest plays an important role in the global carbon budget and in driving interannual variability in seasonal cycles of atmospheric CO$_{2}$. Satellite-based observations from polar orbiting satellites like the Orbiting Carbon Observatory-2 (OCO-2) offer an opportunity to characterize boreal forest seasonal cycles across longitudes with a spatially and temporally rich data set, but data quality controls and biases still require vetting at high latitudes. With the objective of improving data availability at northern, terrestrial high latitudes, this study evaluates quality control methods and biases of OCO-2 retrievals of atmospheric column-averaged dry air mole fractions of CO$_{2}$ (X$_{CO2}$) in boreal forest regions. In addition to the standard quality control (QC) filters recommended for the Atmospheric Carbon Observations from Space (ACOS) B8 (B8 QC) and ACOS B9 (B9 QC) OCO-2 retrievals, a third set of quality control filters were specifically tailored to boreal forest observations (boreal QC) with the goal of increasing data availability at high latitudes without sacrificing data quality. Ground-based reference measurements of X$_{CO2}$ include observations from two sites in the Total Carbon Column Observing Network (TCCON) at East Trout Lake, Saskatchewan, Canada, and Sodankylä, Finland. OCO-2 retrievals were also compared to ground-based observations from two Bruker EM27/SUN Fourier transform infrared spectrometers (FTSs) at Fairbanks, Alaska, USA. The EM27/SUN spectrometers that were deployed in Fairbanks were carefully monitored for instrument performance and were bias corrected to TCCON using observations at the Caltech TCCON site. The B9 QC were found to pass approximately twice as many OCO-2 retrievals over land north of 50° N than the B8 QC, and the boreal QC were found to pass approximately twice as many retrievals in May, August, and September as the B9 QC. While boreal QC results in a substantial increase in passable retrievals, this is accompanied by increases in the standard deviations in biases at boreal forest sites from ∼1.4 parts per million (ppm) with B9 QC to ∼1.6 ppm with boreal QC. Total average biases for coincident OCO-2 retrievals at the three sites considered did not consistently increase or decrease with different QC methods, and instead, responses to changes in QC varied according to site and satellite viewing geometries. Regardless of the quality control method used, seasonal variability in biases was observed, and this variability was more pronounced at Sodankylä and East Trout Lake than at Fairbanks. Long-term coincident observations from TCCON, EM27/SUN, and satellites from multiple locations would be necessary to determine whether the reduced seasonal variability in bias at Fairbanks is due to geography or instrumentation. Monthly average biases generally varied between −1 and +1 ppm at the three sites considered, with more negative biases in spring (March, April, and May – MAM) and autumn (September and October – SO) but more positive biases in the summer months (June, July, and August – JJA). Monthly standard deviations in biases ranged from approximately 1.0 to 2.0 ppm and did not exhibit strong seasonal dependence, apart from exceptionally high standard deviation observed with all three QC methods at Sodankylä in June. There was no evidence found to suggest that seasonal variability in bias is a direct result of air mass dependence in ground-based retrievals or of proximity bias from coincidence criteria, but there were a number of retrieval parameters used as quality control filters that exhibit seasonality and could contribute to seasonal dependence in OCO-2 bias. Furthermore, it was found that OCO-2 retrievals of X$_{CO2}$ without the standard OCO-2 bias correction exhibit almost no perceptible seasonal dependence in average monthly bias at these boreal forest sites, suggesting that seasonal variability in bias is introduced by the bias correction. Overall, we found that modified quality controls can allow for significant increases in passable OCO-2 retrievals with only marginal compromises in data quality, but seasonal dependence in biases still warrants further exploration

Comment on Rojas-Bracho and Colleagues (2019): Unsubstantiated Claims Can Lead to Tragic Conservation Outcomes

The vaquita’s decline is a tragic story indeed. However, the lack of action to prevent the extinction of this species is not due to unsubstantiated claims and scientific uncertainty

Translocation and hand-rearing of the short-tailed albatross Phoebastria albatrus: early indicators of success for species conservation and island restoration

Many endemic species, particularly those on remote islands, have been driven to extinction or near extinction by anthropogenic influences. The short-tailed albatross Phoebastria albatrus once numbered in the millions but was thought to be extinct by the mid 20th century. Albatrosses, of the family Diomedeidae, are among the most threatened birds globally as a result of commercial exploitation, introduced predators, and mortality in commercial fisheries. We applied an experimental approach over 5 years to evaluate the translocation and hand-rearing of albatross chicks by comparing growth, physiological health indices, post-fledging survival, and migration patterns with a control group of naturally reared chicks in the source population. Hand-reared chicks had comparable or superior health and similar rates of immediate post-fledging mortality (15%), with mortality strongly female-biased in both groups. Hand-reared birds had longer post-fledging drift periods before attaining sustained flight (also female-biased) but comparable, albeit somewhat wider ranging, migration patterns to naturally reared chicks during their first 6 months at sea. Recruitment to the translocation site of a breeding pair that included a hand-reared bird occurred within 5 years of the first translocation. Success will ultimately depend on continued recruitment and breeding over the coming decades, given delayed breeding in these long-lived species. The results to date, however, have exceeded initial expectations and can inform potential reintroductions of other long-lived, migratory avian species with strong natal philopatry, and reintroductions of native species to former breeding islands.Keywords: Post-release survival, Colony establishment, Recruitment, Migration, Reintroduction biology, Phoebastria albatrus, Short-tailed albatros

Vaquita Face Extinction from Bycatch. Comment on Manjarrez-Bringas, N. et al., Lessons for Sustainable Development: Marine Mammal Conservation Policies and Its Social and Economic Effects.

We are among the scientists who have documented the environmental and ecological changes to the Upper Gulf of California following the reduction in the Colorado River’s flow. We object to any suggestion that our research supports Manjarrez-Bringas et al.’s conclusion that the decline in the Colorado River’s flow is the reason for the decline in the population of the endangered vaquita porpoise (Phocoena sinus). Manjarrez-Bringas et al.’s conclusions are incongruent with their own data, their logic is untenable, their analyses fail to consider current illegal fishing practices, and their recommendations are unjustified and misdirected. Vaquita face extinction because of bycatch, not because of the lack of river flow

Evolution of Male-Killer Suppression in a Natural Population

Male-killing bacteria are widespread in arthropods, and can profoundly alter the reproductive biology of their host species. Here we detail the first case of complete suppression of a male killer. The nymphalid butterfly Hypolimnas bolina is infected with a strain of the bacterium Wolbachia, wBol1, which kills male host embryos in Polynesian populations, but does not do so in many areas of Southeast Asia, where both males and female adults are naturally infected, and wBol1-infected females produce a 1:1 sex ratio. We demonstrate that absence of male killing by wBol1 is associated with dominant zygotic suppression of the action of the male killer. Simulations demonstrate host suppressors of male-killer action can spread very rapidly, and historical data indicating the presence of male killing in Southeast Asia in the very recent past suggests suppressor spread has been a very recent occurrence. Thus, male killer/host interactions are much more dynamic than previously recognised, with rapid and dramatic loss of the phenotype. Our results also indicate that suppression can render male killers completely quiescent, leading to the conclusion that some species that do not currently express a male killer may have done so in the past, and thus that more species have had their biology affected by these parasites than previously believed

The Viral Interferon Regulatory Factors of Kaposi's Sarcoma-Associated Herpesvirus Differ in Their Inhibition of Interferon Activation Mediated by Toll-Like Receptor 3

Kaposi's sarcoma-associated herpesvirus (KSHV) infection is correlated with three human malignancies and can establish lifelong latent infection in multiple cell types within its human host. In order to establish and maintain infection, KSHV utilizes multiple mechanisms to evade the host immune response. One such mechanism is the expression of a family of genes with homology to cellular interferon (IFN) regulatory factors (IRFs), known as viral IRFs (vIRFs). We demonstrate here that KSHV vIRF1, -2, and -3 have a differential ability to block type I interferon signaling mediated by Toll-like receptor 3 (TLR3), a receptor we have previously shown to be activated upon KSHV infection. vIRF1, -2, and -3 inhibited TLR3-driven activation of IFN transcription reporters. However, only vIRF1 and vIRF2 inhibited increases in both IFN-β message and protein levels following TLR3 activation. The expression of vIRF1 and vIRF2 also allowed for increased replication of a virus known to activate TLR3 signaling. Furthermore, vIRF1 and vIRF2 may block TLR3-mediated signaling via different mechanisms. Altogether, this report indicates that vIRFs are able to block IFN mediated by TLRs but that each vIRF has a unique function and mechanism for blocking antiviral IFN responses