Comparison of Quadratic- and Median-Based Roughness Penalties for Penalized-Likelihood Sinogram Restoration in Computed Tomography

We have compared the performance of two different penalty choices for a penalized-likelihood sinogram-restoration strategy we have been developing. One is a quadratic penalty we have employed previously and the other is a new median-based penalty. We compared the approaches to a noniterative adaptive filter that loosely but not explicitly models data statistics. We found that the two approaches produced similar resolution-variance tradeoffs to each other and that they outperformed the adaptive filter in the low-dose regime, which suggests that the particular choice of penalty in our approach may be less important than the fact that we are explicitly modeling data statistics at all. Since the quadratic penalty allows for derivation of an algorithm that is guaranteed to monotonically increase the penalized-likelihood objective function, we find it to be preferable to the median-based penalty

Investigation of iterative image reconstruction in low-dose breast CT

There is interest in developing computed tomography (CT) dedicated to breast-cancer imaging. Because breast tissues are radiation-sensitive, the total radiation exposure in a breast-CT scan is kept low, often comparable to a typical two-view mammography exam, thus resulting in a challenging low-dose-data-reconstruction problem. In recent years, evidence has been found that suggests that iterative reconstruction may yield images of improved quality from low-dose data. In this work, based upon the constrained image total-variation minimization program and its numerical solver, i.e., the adaptive steepest descent-projection onto the convex set (ASD-POCS), we investigate and evaluate iterative image reconstructions from low-dose breast-CT data of patients, with a focus on identifying and determining key reconstruction parameters, devising surrogate utility metrics for characterizing reconstruction quality, and tailoring the program and ASD-POCS to the specific reconstruction task under consideration. The ASD-POCS reconstructions appear to outperform the corresponding clinical FDK reconstructions, in terms of subjective visualization and surrogate utility metrics

Investigation of iterative image reconstruction in low-dose breast CT

Interest exists in developing computed tomography (CT) dedicated for breast-cancer imaging. Because breast tissues are radiation-sensitive, the total radiation exposure in a breast-CT scan is kept low, often comparable to a typical two-view mammography exam, thus resulting in a challenging low-dose-data-reconstruction problem. In recent years, evidence exists suggesting that iterative reconstruction may yield images of improved quality from low-dose data. In this work, based upon the constrained image-total-variation (TV) minimization program and its numerical solver, i.e., the adaptive steepest descent-projection onto the convex set (ASD-POCS), we investigate and evaluate iterative image reconstructions from low-dose breast-CT data of patients, with focuses on identifying and determining key reconstruction parameters, devising surrogate utility metrics for characterizing reconstruction quality, and tailoring the program and ASD-POCS to the specific reconstruction task under consideration. The ASD-POCS reconstructions appear to outperform the corresponding clinical FDK reconstructions, in terms of subjective visualization and surrogate utility metrics

History of anthropogenic Nitrogen inputs (HaNi) to the terrestrial biosphere: A 5 arcmin resolution annual dataset from 1860 to 2019

Excessive anthropogenic nitrogen (N) inputs to the biosphere have disrupted the global nitrogen cycle. To better quantify the spatial and temporal patterns of anthropogenic N inputs, assess their impacts on the biogeochemical cycles of the planet and the living organisms, and improve nitrogen use efficiency (NUE) for sustainable development, we have developed a comprehensive and synthetic dataset for reconstructing the History of anthropogenic Nitrogen inputs (HaNi) to the terrestrial biosphere. The HaNi dataset takes advantage of different data sources in a spatiotemporally consistent way to generate a set of high-resolution gridded N input products from the preindustrial period to the present (1860–2019). The HaNi dataset includes annual rates of synthetic N fertilizer, manure application/deposition, and atmospheric N deposition on cropland, pasture, and rangeland at a spatial resolution of 5 arcmin × 5 arcmin. Specifically, the N inputs are categorized, according to the N forms and land uses, into 10 types: (1) -N fertilizer applied to cropland, (2) NO-N fertilizer applied to cropland, (3) -N fertilizer applied to pasture, (4) NO-N fertilizer applied to pasture, (5) manure N application on cropland, (6) manure N application on pasture, (7) manure N deposition on pasture, (8) manure N deposition on rangeland, (9) NHx-N deposition, and (10) NOy-N deposition. The total anthropogenic N (TN) inputs to global terrestrial ecosystems increased from 29.05 Tg N yr−1 in the 1860s to 267.23 Tg N yr−1 in the 2010s, with the dominant N source changing from atmospheric N deposition (before the 1900s) to manure N (in the 1910s–2000s) and then to synthetic fertilizer in the 2010s. The proportion of synthetic -N in fertilizer input increased from 64 % in the 1960s to 90 % in the 2010s, while synthetic NO-N fertilizer decreased from 36 % in the 1960s to 10 % in the 2010s. Hotspots of TN inputs shifted from Europe and North America to East and South Asia during the 1960s–2010s. Such spatial and temporal dynamics captured by the HaNi dataset are expected to facilitate a comprehensive assessment of the coupled human–Earth system and address a variety of social welfare issues, such as the climate–biosphere feedback, air pollution, water quality, and biodiversity. The data are available at https://doi.org/10.1594/PANGAEA.942069 (Tian et al., 2022)

HaNi: A Historical dataset of Anthropogenic Nitrogen Inputs to the terrestrial biosphere (1860-2019)

Excessive anthropogenic nitrogen (N) inputs to the biosphere have disrupted the global nitrogen cycle. To better quantify the spatial and temporal patterns of anthropogenic N enrichments, assess their impacts on the biogeochemical cycles of the planet and other living organisms, and improve nitrogen use efficiency (NUE) for sustainable development, we develop a comprehensive and synthetic dataset for anthropogenic N inputs to the terrestrial biosphere. This Harmonized Anthropogenic N Inputs (HaNi) dataset takes advantage of different data sources in a spatiotemporally consistent way to generate a set of high-resolution gridded N input products from the preindustrial to present (1860-2019). The HaNi dataset includes annual rates of synthetic N fertilizer, manure application/deposition, and atmospheric N deposition in cropland, pasture, and rangeland at 5-arcmin. Specifically, the N inputs are categorized, according to the N forms and the land use, as 1) NH4-N fertilizer applied to cropland, 2) NO3-N fertilizer applied to cropland, 3) NH4-N fertilizer applied to pasture, 4) NO3-N fertilizer applied to pasture, 5) manure N application on cropland, 6) manure N application on pasture, 7) manure N deposition on pasture, 8) manure N deposition on rangeland, 9) NHx-N deposition, and 10) NOy-N deposition. The total anthropogenic N (TN) inputs to global terrestrial ecosystems increased from 29.05 Tg N yr-1 in the 1860s to 267.23 Tg N yr-1 in the 2010s, with the dominant N source changing from atmospheric N deposition (before the 1900s) to manure N (the 1910s-2000s), and to synthetic fertilizer in the 2010s. The proportion of synthetic NH4-N fertilizer increased from 64% in the 1960s to 90% in the 2010s, while synthetic NO3-N fertilizer decreased from 36% in the 1960s to 10% in the 2010s. Hotspots of TN inputs shifted from Europe and North America to East and South Asia during the 1960s-2010s. Such spatial and temporal dynamics captured by the HaNi dataset are expected to facilitate a comprehensive assessment of the coupled human-earth system and address a variety of social welfare issues, such as climate-biosphere feedback, air pollution, water quality, and biodiversity