Early diverging lineages within Cryptomycota and Chytridiomycota dominate the fungal communities in ice-covered lakes of the McMurdo Dry Valleys, Antarctica

Antarctic ice-covered lakes are exceptional sites for studying the ecology of aquatic fungi under conditions of minimal human disturbance. In this study, we explored the diversity and community composition of fungi in five permanently covered lake basins located in the Taylor and Miers Valleys of Antarctica. Based on analysis of the 18S rRNA sequences, we showed that fungal taxa represented between 0.93% and 60.32% of the eukaryotic sequences. Cryptomycota and Chytridiomycota dominated the fungal communities in all lakes; however, members of Ascomycota, Basidiomycota, Zygomycota, and Blastocladiomycota were also present. Of the 1313 fungal OTUs identified, the two most abundant, belonging to LKM11 and Chytridiaceae, comprised 74% of the sequences. Significant differences in the community structure were determined among lakes, water depths, habitat features (i.e., brackish vs. freshwaters), and nucleic acids (DNA vs. RNA), suggesting niche differentiation. Network analysis suggested the existence of strong relationships among specific fungal phylotypes as well as between fungi and other eukaryotes. This study sheds light on the biology and ecology of basal fungi in aquatic systems. To our knowledge, this is the first report showing the predominance of early diverging lineages of fungi in pristine limnetic ecosystems, particularly of the enigmatic phylum Cryptomycota.National Science Foundation/[PLR1439774]/NSF/Estados UnidosNational Science Foundation/[PLR1115245]/NSF/Estados UnidosNational Science Foundation/[PLR 1543537]/NSF/Estados UnidosNational Aeronautics and Space Administration/[NNH14ZDA001N-PSTAR]/NASA/Estados UnidosUCR::Vicerrectoría de Docencia::Ciencias Básicas::Facultad de Ciencias::Escuela de Biologí

Winter-Summer Succession of Unicellular Eukaryotes in a Meso-eutrophic Coastal System

The objective of this study was to explore the succession of planktonic unicellular eukaryotes by means of 18S rRNA gene tag pyrosequencing in the eastern English Channel (EEC) during the winter to summer transition. The 59 most representative (> 0.1 %, representing altogether 95 % of total reads), unique operational taxonomic units (OTUs) from all samples belonged to 18 known high-level taxonomic groups and 1 unaffiliated clade. The five most abundant OTUs (69.2 % of total reads) belonged to Dinophyceae, Cercozoa, Haptophyceae, marine alveolate group I, and Fungi. Cluster and network analysis between samples distinguished the winter, the pre-bloom, the Phaeocystis globosa bloom and the post-bloom early summer conditions. The OTUs-based network revealed that P. globosa showed a relatively low number of connections-most of them negative-with all other OTUs. Fungi were linked to all major taxonomic groups, except Dinophyceae. Cercozoa mostly co-occurred with the Fungi, the Bacillariophyceae and several of the miscellaneous OTUs. This study provided a more detailed exploration into the planktonic succession pattern of the EEC due to its increased depth of taxonomic sampling over previous efforts based on classical monitoring observations. Data analysis implied that the food web concept in a coastal system based on predator-prey (e.g. grazer-phytoplankton) relationships is just a part of the ecological picture; and those organisms exploiting a variety of strategies, such as saprotrophy and parasitism, are persistent and abundant members of the community

Effects of land use on the fungal spore richness in small crater-lake basins of western Uganda

Mycological tools to estimate the effects of diverse land-use practices on fungal diversity are scarce, because of poor knowledge of the taxonomic diversity of tropical fungi and their response to anthropogenic habitat change. Here, we investigate assemblages of fungal spores, recently deposited in the bottom sediments of 24 small crater lakes in western Uganda, to assess the relationship between the local richness of fungi and environmental variation in the crater basin along regional gradients of natural vegetation and land use. We recovered similar to 9500 fungal spore specimens, which could be attributed to 216 morphotypes. Using an information-theoretic approach based on the corrected Akaike Information Criterion (AICc), we determined the environmental factors which best explained variation in the diversity of fungal spores among three datasets: (i) the full set of 24 crater basins, (ii) the subset of 22 basins with freshwater lakes, and (iii) the subset of 17 basins partly or completely in agricultural use (cropland, fallow land, pasture and plantation). In these 17 human-impacted crater basins our results revealed a negative relationship between fungal spore richness and the areal fraction of basins in agricultural use. However, this detrimental effect of land use on fungal spore richness was not apparent across the full set of both disturbed and (presently) undisturbed basins. This was due to large variation in fungal spore richness among the undisturbed basins covered either with forest or savannah vegetation, probably resulting from site-specific controls on fungal habitat diversity, such as climatic moisture balance and the composition of natural and/or secondary vegetation. The land-use effects on fungal spore diversity, as documented in this study, suggest that communities of tropical fungi progressively exposed to land-use practices are threatened by species loss. Hence, our study demonstrates the need to develop conservation strategies mitigating the impacts of agriculture on the biodiversity of tropical fungi