Broad P V Absorption in the BALQSO, PG 1254+047: Column Densities, Ionizations and Metal Abundances in BAL Winds

This paper discusses the detection of P V 1118,1128 and other broad absorption lines (BALs) in archival HST spectra of the low-redshift BALQSO, PG 1254+047. The P V identification is secured by excellent redshift and profile coincidences with the other BALs, such as C IV 1548,1550 and Si IV 1393,1403, and by photoionization calculations showing that other lines near this wavelength, e.g. Fe III 1123, should be much weaker than P V. The observed BAL strengths imply that either 1) there are extreme abundance ratios such as [C/H] >~ +1.0, [Si/H] >~ +1.8 and [P/C] >~ +2.2, or 2) at least some of the lines are much more optically thick than they appear. I argue that the significant presence of P V absorption indicates severe line saturation, which is disguised in the observed (moderate-strength) BALs because the absorber does not fully cover the continuum source(s) along our line(s) of sight. Computed optical depths for all UV resonance lines show that the observed BALs are consistent with solar abundances if 1) the ionization parameter is at least moderately high, log U >~ -0.6, 2) the total hydrogen column density is log N_H(cm-2) >~ 22.0, and 3) the optical depths in strong lines like C IV and O VI 1032,1038 are >~25 and >~80, respectively. These optical depths and column densities are at least an order of magnitude larger than expected from the residual intensities in the BAL troughs, but they are consistent with the large absorbing columns derived from X-ray observations of BALQSOs. The outflowing BALR, at velocities from -15,000 to -27,000 km/s in PG 1254+047, is therefore a strong candidate for the X-ray absorber in BALQSOs.Comment: 16 pages (LaTeX) plus 8 pages of figures in one file (pg1254_figs.ps.gz), in press with Ap

Red and Blue Shifted Broad Lines in Luminous Quasars

We have observed a sample of 22 luminous quasars, in the range 2.0<z<2.5, at 1.6 microns with the near-infrared (NIR) spectrograph FSPEC on the Multiple Mirror Telescope. Our sample contains 13 radio-loud and 9 radio-quiet objects. We have measured the systemic redshifts z_(sys) directly from the strong [O III]5007 line emitted from the narrow-line-region. From the same spectra, we have found that the non-resonance broad H$\beta$ lines have a systematic mean redward shift of 520+/-80 km/s with respect to systemic. Such a shift was not found in our identical analysis of the low-redshift sample of Boroson & Green. The amplitude of this redshift is comparable to half the expected gravitational redshift and transverse Doppler effects, and is consistent with a correlation between redshift differences and quasar luminosity. From data in the literature, we confirm that the high-ionization rest-frame ultraviolet broad lines are blueshifted ~550-1050 km/s from systemic, and that these velocity shifts systematically increase with ionization potential. Our results allow us to quantify the known bias in estimating the ionizing flux from the inter-galactic-medium J_(IGM) via the Proximity Effect. Using redshift measurements commonly determined from strong broad line species, like Ly\alpha or CIV1549, results in an over-estimation of J_(IGM) by factors of ~1.9-2.3. Similarly, corresponding lower limits on the density of baryon Omega_b will be over-estimated by factors of ~1.4-1.5. However, the low-ionization MgII2798 broad line is within ~50 km/s of systemic, and thus would be the line of choice for determining the true redshift of 1.0<z<2.2 quasars without NIR spectroscopy, and z>3.1 objects using NIR spectroscopy.Comment: 12 pages, Latex, 2 figures, 2 tables, Accepted for publication in ApJ Letter

Continuum and Emission Line Strength Relations for a large Active Galactic Nuclei Sample

We report on the analysis of a large sample of 744 type 1 Active Galactic Nuclei, including quasars and Seyfert 1 galaxies across the redshift range from 0 < z < 5 and spanning nearly 6 orders of magnitude in continuum luminosity. We discuss correlations of continuum and emission line properties in the rest-frame ultraviolet and optical spectral ranges. The well established Baldwin Effect is detected for almost all emission lines from OVI1034 to [OIII]5007. Their equivalent widths are significantly anti-correlated with the continuum strength, while they are nearly independent of redshift. This is the well known Baldwin Effect. Its slope beta, measured as log W_lambda ~ beta * log lambda * L_lambda (1450A), shows a tendency to become steeper towards higher luminosity. The slope of the Baldwin Effect also increases with the ionization energy needed to create the individual lines. In contrast to this general trend, the NV1240 equivalent width is nearly independent of continuum luminosity and remains nearly constant. The overall line behaviors are consistent with softer UV continuum shapes and perhaps increasing gas metallicity in more luminous Active Galactic Nuclei

The HST Survey of BL Lacertae Objects. II. Host Galaxies

We have used the HST WFPC2 camera to survey 132 BL Lac objects comprising seven complete radio-, X-ray-, and optically-selected samples. We obtained useful images for 110 targets spanning the redshift range 0 < z < 1.3. In two thirds of the BL Lac images, host galaxies are detected, including nearly all for z < 0.5 (58 of 63). The highest redshift host galaxy detected is in a BL Lac object at z=0.664. In 58 of the 72 resolved host galaxies, a de Vaucouleurs profile is significantly preferred, at >99% confidence, over a pure exponential disk; the two fits are comparable in the remaining 14 cases. These results limit the number of disk systems to at most 8% of BL Lacs (at 99% confidence), and are consistent with all BL~Lac host galaxies being ellipticals. The detected host galaxies are luminous ellipticals with a median absolute K-corrected magnitude of M_R= -23.7 +- 0.6 mag, at least one magnitude brighter than M* and comparable to brightest cluster galaxies. The galaxy morphologies are generally smooth and undisturbed, with small or negligible ellipticities (<0.2). There is no correlation between host galaxy and observed nuclear magnitude or estimated jet power corrected for beaming. If black hole mass is correlated linearly with bulge mass in general, this implies a large range in Eddington ratio. Present data strongly support the unification picture with FR I galaxies constituting the bulk of the parent population of BL Lac objects.Comment: Accepted for publication on ApJ. 38 pages, 8 figure

The CORALS Survey I: New Estimates of the Number Density and Gas Content of Damped Lyman Alpha Systems Free from Dust Bias

(Abridged) We present the first results from the Complete Optical and Radio Absorption Line System (CORALS) survey. We have compiled a homogeneous sample of radio-selected QSOs from the Parkes Catalogue and searched for damped Lyman alpha systems (DLAs) towards every target, irrespective of its optical magnitude. This approach circumvents selection effects -- particularly from intervening dust -- which have long been suspected to affect DLA surveys in optically-selected, magnitude-limited QSO samples. The CORALS data set consists of 66 z_em > 2.2 QSOs in which 22 DLAs with absorption redshifts 1.8 < z_abs < z_em have been identified over a total redshift interval Delta z = 55.46. In this first paper of the CORALS series we describe the sample, present intermediate resolution spectroscopy and determine the population statistics of DLAs. We deduce a value of the neutral gas mass density traced by DLAs (expressed as a fraction of the closure density) log Omega_DLA h = -2.59^{+0.17}_{-0.24}, and a number density of DLAs per unit redshift n(z) = 0.31^{+0.09}_{-0.08}, both at a mean redshift = 2.37. Taking into account the errors, we conclude that dust-induced bias in previous surveys may have led to an underestimate of these quantities by at most a factor of two and we have not uncovered a previously unrecognised population of high column density DLAs in front of faint QSOs.Comment: 25 pages, accepted for publication in A&

Assessment of the Albumin-Bilirubin (ALBI) Grade as a Prognostic Indicator for Hepatocellular Carcinoma Patients Treated With Radioembolization.

OBJECTIVE: As the utility of Child-Pugh (C-P) class is limited by the subjectivity of ascites and encephalopathy, we evaluated a previously established objective method, the albumin-bilirubin (ALBI) grade, as a prognosticator for yttrium-90 radioembolization (RE) treatment for patients with hepatocellular carcinoma (HCC). MATERIALS AND METHODS: A total of 117 patients who received RE for HCC from 2 academic centers were reviewed and stratified by ALBI grade, C-P class, and Barcelona Clinic Liver Cancer stage. The overall survival (OS) according to these 3 criteria was evaluated by Kaplan-Meier survival analysis. The utilities of C-P class and ALBI grade as prognostic indicators were compared using the log-rank test. Multivariate Cox regression analysis was performed to identify additional predictive factors. RESULTS: Patients with ALBI grade 1 (n=49) had superior OS than those with ALBI grade 2 (n=65) (P=0.01). Meanwhile, no significant difference was observed in OS between C-P class A (n=100) and C-P class B (n=14) (P=0.11). For C-P class A patients, the ALBI grade (1 vs. 2) was able to stratify 2 clear and nonoverlapping subgroups with differing OS curves (P=0.03). Multivariate Cox regression test identified alanine transaminase, Barcelona Clinic Liver Cancer stage, and ALBI grade as the strongest prognostic factors for OS (P\u3c0.10). CONCLUSIONS: ALBI grade as a prognosticator has demonstrated clear survival discrimination that is superior to C-P class among HCC patients treated with RE, particularly within the subgroup of C-P class A patients. ALBI grade is useful for clinicians to make decisions as to whether RE should be recommended to patients with HCC

Comparative Global Gene Expression Profiles of Wild-Type Yersinia pestis CO92 and Its Braun Lipoprotein Mutant at Flea and Human Body Temperatures

Braun/murein lipoprotein (Lpp) is involved in inflammatory responses and septic shock. We previously characterized a Δlpp mutant of Yersinia pestis CO92 and found that this mutant was defective in surviving in macrophages and was attenuated in a mouse inhalation model of plague when compared to the highly virulent wild-type (WT) bacterium. We performed global transcriptional profiling of WT Y. pestis and its Δlpp mutant using microarrays. The organisms were cultured at 26 and 37 degrees Celsius to simulate the flea vector and mammalian host environments, respectively. Our data revealed vastly different effects of lpp mutation on the transcriptomes of Y. pestis grown at 37 versus 26°C. While the absence of Lpp resulted mainly in the downregulation of metabolic genes at 26°C, the Y. pestis Δlpp mutant cultured at 37°C exhibited profound alterations in stress response and virulence genes, compared to WT bacteria. We investigated one of the stress-related genes (htrA) downregulated in the Δlpp mutant relative to WT Y. pestis. Indeed, complementation of the Δlpp mutant with the htrA gene restored intracellular survival of the Y. pestis Δlpp mutant. Our results support a role for Lpp in Y. pestis adaptation to the host environment, possibly via transcriptional activation of htrA

Analyzing collaborative learning processes automatically

In this article we describe the emerging area of text classification research focused on the problem of collaborative learning process analysis both from a broad perspective and more specifically in terms of a publicly available tool set called TagHelper tools. Analyzing the variety of pedagogically valuable facets of learners’ interactions is a time consuming and effortful process. Improving automated analyses of such highly valued processes of collaborative learning by adapting and applying recent text classification technologies would make it a less arduous task to obtain insights from corpus data. This endeavor also holds the potential for enabling substantially improved on-line instruction both by providing teachers and facilitators with reports about the groups they are moderating and by triggering context sensitive collaborative learning support on an as-needed basis. In this article, we report on an interdisciplinary research project, which has been investigating the effectiveness of applying text classification technology to a large CSCL corpus that has been analyzed by human coders using a theory-based multidimensional coding scheme. We report promising results and include an in-depth discussion of important issues such as reliability, validity, and efficiency that should be considered when deciding on the appropriateness of adopting a new technology such as TagHelper tools. One major technical contribution of this work is a demonstration that an important piece of the work towards making text classification technology effective for this purpose is designing and building linguistic pattern detectors, otherwise known as features, that can be extracted reliably from texts and that have high predictive power for the categories of discourse actions that the CSCL community is interested in

Atlas of the OMERACT Heel Enthesitis MRI Scoring System (HEMRIS)

Objective: Assessment of enthesitis, a key feature in spondyloarthritis (SpA) and psoriatic arthritis (PsA), using objective and sensitive methods is pivotal in clinical trials. MRI allows detection of both soft tissue and intra-osseous changes of enthesitis. This article presents an atlas for the Outcome Measures in Rheumatology (OMERACT) Heel Enthesitis Magnetic Resonance ImagingMRI Scoring System (HEMRIS). Methods: Following a preliminary selection of potential examples of each grade, as per HEMRIS definitions, the images along with detailed definitions and reader rules were discussed at web-based, interactive meetings between the members of the OMERACT MRI in Arthritis Working Group. Results: Reference images of each grade of the MRI features to be assessed using HEMRIS, along with reader rules and recommended MRI sequences are depicted. Conclusion: The presented reference images can be used to guide scoring Achilles tendon and plantar fascia (plantar aponeurosis) enthesitis according to the OMERACT HEMRIS in clinical trials and cohorts in which MRI enthesitis is used as an outcome