Capacitive pressure transducer system

Closed loop capacitive pressure transducer with extended frequency response for very low pressure measurement

Asymptotic Level Density of the Elastic Net Self-Organizing Feature Map

Whileas the Kohonen Self Organizing Map shows an asymptotic level density following a power law with a magnification exponent 2/3, it would be desired to have an exponent 1 in order to provide optimal mapping in the sense of information theory. In this paper, we study analytically and numerically the magnification behaviour of the Elastic Net algorithm as a model for self-organizing feature maps. In contrast to the Kohonen map the Elastic Net shows no power law, but for onedimensional maps nevertheless the density follows an universal magnification law, i.e. depends on the local stimulus density only and is independent on position and decouples from the stimulus density at other positions.Comment: 8 pages, 10 figures. Link to publisher under http://link.springer.de/link/service/series/0558/bibs/2415/24150939.ht

Parameter estimation in pair hidden Markov models

This paper deals with parameter estimation in pair hidden Markov models (pair-HMMs). We first provide a rigorous formalism for these models and discuss possible definitions of likelihoods. The model being biologically motivated, some restrictions with respect to the full parameter space naturally occur. Existence of two different Information divergence rates is established and divergence property (namely positivity at values different from the true one) is shown under additional assumptions. This yields consistency for the parameter in parametrization schemes for which the divergence property holds. Simulations illustrate different cases which are not covered by our results.Comment: corrected typo

Anomalities in the Analysis of Calibrated Data

This study examines effects of calibration errors on model assumptions and data--analytic tools in direct calibration assays. These effects encompass induced dependencies, inflated variances, and heteroscedasticity among the calibrated measurements, whose distributions arise as mixtures. These anomalies adversely affect conventional inferences, to include the inconsistency of sample means; the underestimation of measurement variance; and the distributions of sample means, sample variances, and Student's t as mixtures. Inferences in comparative experiments remain largely intact, although error mean squares continue to underestimate the measurement variances. These anomalies are masked in practice, as conventional diagnostics cannot discern irregularities induced through calibration. Case studies illustrate the principal issues

Spontaneous dressed-state polarization in the strong driving regime of cavity QED

We utilize high-bandwidth phase quadrature homodyne measurement of the light transmitted through a Fabry-Perot cavity, driven strongly and on resonance, to detect excess phase noise induced by a single intracavity atom. We analyze the correlation properties and driving-strength dependence of the atom-induced phase noise to establish that it corresponds to the long-predicted phenomenon of spontaneous dressed-state polarization. Our experiment thus provides a demonstration of cavity quantum electrodynamics in the strong driving regime, in which one atom interacts strongly with a many-photon cavity field to produce novel quantum stochastic behavior.Comment: 4 pages, 4 color figure

The Alaotra gentle lemur: Population estimation and subsequent implications

Durrell Wildlife Conservation Trust (DWCT) has conducted since 1994 several census’ on the population of the Alaotran gentle lemur to observe the development of the population in time and space

Efficient construction of an assembly string graph using the FM-index

Motivation: Sequence assembly is a difficult problem whose importance has grown again recently as the cost of sequencing has dramatically dropped. Most new sequence assembly software has started by building a de Bruijn graph, avoiding the overlap-based methods used previously because of the computational cost and complexity of these with very large numbers of short reads. Here, we show how to use suffix array-based methods that have formed the basis of recent very fast sequence mapping algorithms to find overlaps and generate assembly string graphs asymptotically faster than previously described algorithms

A New Simulated Annealing Algorithm for the Multiple Sequence Alignment Problem: The approach of Polymers in a Random Media

We proposed a probabilistic algorithm to solve the Multiple Sequence Alignment problem. The algorithm is a Simulated Annealing (SA) that exploits the representation of the Multiple Alignment between $D$ sequences as a directed polymer in $D$ dimensions. Within this representation we can easily track the evolution in the configuration space of the alignment through local moves of low computational cost. At variance with other probabilistic algorithms proposed to solve this problem, our approach allows for the creation and deletion of gaps without extra computational cost. The algorithm was tested aligning proteins from the kinases family. When D=3 the results are consistent with those obtained using a complete algorithm. For $D>3$ where the complete algorithm fails, we show that our algorithm still converges to reasonable alignments. Moreover, we study the space of solutions obtained and show that depending on the number of sequences aligned the solutions are organized in different ways, suggesting a possible source of errors for progressive algorithms.Comment: 7 pages and 11 figure

Empirical 2MASS-WFC3/IR filter transformations from synthetic photometry

Near-infrared bandpasses on spaceborne observatories diverge from their ground-based counterparts as they are free of atmospheric telluric absorption. Available transformations between respective filter systems in the literature rely on theoretical stellar atmospheres, which are known to have difficulties reproducing observed spectral energy distributions of cool giants. We present new transformations between the 2MASS $JHK_S$ and HST WFC3/IR F110W, F125W, & F160W photometric systems based on synthetic photometry of empirical stellar spectra from four spectral libraries. This sample comprises over 1000 individual stars, which together span nearly the full HR diagram and sample stellar populations from the solar neighborhood out to the Magellanic Clouds, covering a broad range of ages, metallicities, and other relevant stellar properties. In addition to global color-dependent transformations, we examine band-to-band differences for cool, luminous giant stars in particular, including multiple types of primary distance indicators.Comment: 24 pages, 15 figures, accepted to A

An analytical treatment of the Clock Paradox in the framework of the Special and General Theories of Relativity

In this paper we treat the so called clock paradox in an analytical way by assuming that a constant and uniform force F of finite magnitude acts continuously on the moving clock along the direction of its motion assumed to be rectilinear. No inertial motion steps are considered. The rest clock is denoted as (1), the to-and-fro moving clock is (2), the inertial frame in which (1) is at rest in its origin and (2) is seen moving is I and, finally, the accelerated frame in which (2) is at rest in its origin and (1) moves forward and backward is A. We deal with the following questions: I) What is the effect of the finite force acting on (2) on the proper time intervals measured by the two clocks when they reunite? Does a differential aging between the two clocks occur, as it happens when inertial motion and infinite values of the accelerating force is considered? The Special Theory of Relativity is used in order to describe the hyperbolic motion of (2) in the frame I II) Is this effect an absolute one, i.e. does the accelerated observer A comoving with (2) obtain the same results as that in I, both qualitatively and quantitatively, as it is expected? We use the General Theory of Relativity in order to answer this question.Comment: LaTex2e, 19 pages, no tables, no figures. Rewritten version, it amends the previous one whose results about the treatment with General Relativity were wrong. References added. Eq. (55) corrected. More refined version. Comments and suggestions are warmly welcom